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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067545 ID=TCONS_00067545|Name=TCONS_00067545|organism=Clytia hemisphaerica|type=transcript|length=3333bp
aattaacaCAGCTTGGATATGATTGAATAATCTTGGgtTCAATCACTGAA
TACAAATGTATCATATTGATTTCAGCCCAAAGCAAAAGTGCAAAATCAAA
ACGCAATGAAACAACAACAATCCAAAATGGTTGACAACAAAGTCACCATC
CGACGAAAAGATAAACATGTTCCAATTCCGATCGAGGAATTGATCGATTA
CTACGGCTTCGGTAAACACACCATCAAAATGGTCATTCTTTTGAGTTGCG
TTTGTTTCGCATACGGAGCTCTTACTAACATTCTTGCCAACGTTATCTTA
ATCAATTGGGCGTGTGAACCGGGCGATCGGGCGGATGAACCGCAACTCGT
ATGGGCAACTTTATGTATTGGTTTGGCCCTTGGATCGTTTTACTTTGGCT
GGTTGGCGGATCGGTACGGGCGTAAATTAATGATTGCAGTTACGACCACA
CTCAGTTTATATTTCACACTACTTTTATGTGCTTCTGAAAGTCATTTCGA
TGctttattaattttatttttcacagCGTCTGGCTTGAGTGGCGGAAGAA
TCATATCAAACTATTCTGCAGAATCGTTCCCTGTCAAACACCGAGCTAGA
ATACAAACCGTTTTAGGATTATCATCTAGCCTTGGTTCAGTTGTTTATTC
GTATCTAGCCTATACTCAGAGACTGGGCTGGCGTCATTTCACCCTTACAG
CAAGTGCACcgttgattgtttttattgttatacCGTTTTGGCTACCCGAA
TCTATACCGTATTTACAAATGACCGGAAATGAAGACGAACTATACAGAGT
GTTCCAGCATTTAGCAGAAAGTCATGGAAAGAATTTAAAACGAAGAACTT
TATTAACAGCGAGAACCATCAAAAATAGAGGCAATCTCCCGACCTTGTTT
TCAAAATCTACAATTTGTGGAACTTTGATCGTTATGTTGCTATGGGCAAC
GAGTCGTTTATCCATGAGTGTTTCGACTGTGCTTCATTACAACACTATAG
TGTTTAACAAGACAACATGTCCAGAAAACCAAGTAGATATTCTACAAAGC
TTGTCATTCAAAGAAGTACTCAACTGCAAACACAGTTCAGATGTCTTTTA
CGTTTCATTTATTGGCTCTCTTGCAGAATCAATTGGTCTCGCaatcactt
ttatttttatcaatcaTGTCAGTCGAAGATTTGCTTTTATATGCTTGTTA
CTCATCAATTCGGCGGGATTTATTGCTATGAATATTTGCAGTGTAGCGAC
CATTCATACAGCTCTGGTTTTAATAACTATGGCAACAAGTGCTAGTTTCT
TTCAAGTACTTTGTATTTTCACCAACGAATTTTACCATGCTTCAGTTCGT
TGCACTGCAACTGGGATGTTCAATTTTATATCTTTATTAGCCTTGGTTTT
GATCCCGATTTTGATTAGCCTGAGTTTTGCATTGACTCCGATTGTAGTGA
CAGTGTTTTTTGTATCCTTTNGATCGTTATGTTGCTATGGGCAACGAGTC
GTTTATCCATGAGTGTTTCGACTGTGCTTCATTACAACACTATAGTGTTT
AACAAGACAACATGTCCAGAAAACCAAGTAGATATTCTACAAAGCTTGTC
ATTCAAAGAAGTACTCAACTGCAAACACAGTTCAGATGTCTTTTACGTTT
CATTTATTGGCTCTCTTGCAGAATCAATTGGTCTCGCaatcacttttatt
tttatcaatcaTGTCAGTCGAAGATTTGCTTTTATATGCTTGTTACTCAT
CAATTCGGCGGGATTTATTGCTATGAATATTTGCAGTGTAGCGACCATTC
ATACAGCTCTGGTTTTAATAACTATGGCAACAAGTGCTAGTTTCTTTCAA
GTACTTTGTATTTTCACCAACGAATTTTACCATGCTTCAGTTCGTTGCAC
TGCAACTGGGATGTTCAATTTTATATCTTTATTAGCCTTGGTTTTGATCC
CGATTTTGATTAGCCTGAGTTTTGCATTGACTCCGATTGTAGTAACAGTG
TTTTTTGTATCCTTTACTGTACTTTGTTGTTTCGGCTTGTGGTGGACCCG
AATCAAAACAACATGAAATTCAACGTGTTTGActtgattttgaaattgtt
taGATTTATTCATTGCCATCAAAGACTTAGTTGCCATGTATAATTTGTGA
AATATTCCaatataaaaaagtttcagtttttatgatattatattttaata
tactactttaggcgtacaaacttttgtgagcagaaactttcgtgagTTCA
AAAAATCTcgaatttaacgaaaaaatatttttcgcgagcataaactttcg
cgtaTAGTATCCAGATTCCAGACacacagccaattcgattgacttccaaa
tttgccatactcaccaactttgccaaatctacaatctcaatgtcaaaaga
tcacagcttcatggcaaatttgtacatcgctacGCCGCGATTATGATttc
cgttttgtgatgcttagtcagcagttttctgtcggcgtttgtaaagcgaa
cgattttttaaccaatcagattgccgatcggcattgttttgctttagcat
tggaaggtcttctatttttcaaaatctttggcaaaagtggcaaaattgga
aaaaagaaaagaaaagaacagaggtctcgtgggaacagtgttttgtatgg
agacgtatggaggtaagttccaaaaatgccaagaatgccagattcaccac
atcttttttatttggcatttatggcactcaaattttgccacatttgccaa
atttttgtcaatcgaatgcagaataattggcaatcagggcaaaaatggca
tattttgaagtcaatcgaattggctgacAGTAGATCCCTTGGATCTGCTC
ACCCAGCTCAGACAAAAACGCTCTTAGTTATTCGAatttcagttattcga
agcgATTTAATTCCCCTTAGAGCCAATTTTAAGCTAATTCACCCTcagtt
attcgaatttttcttattGGGAGATCGTCGAGTGAGaacattgattttct
gtgattaaaaaacttttattcttcaaaaaaatcgTCAAGTTTCAGAATTC
ATGGCTATTTACACTCTTCAAGTAATTTGAACATTCTccaacattttctt
tataacttTCATATTTTAAAACCTGTTAataatttgttcaaatttattCT
CTCTTCAAAAAAGTAGAAATTCTTTGTCTTTATCACGCTCAACTGAACCA
CAATGCCTCAATTACTTCAGAAAAGTCCATATGGTTAAGTTGGTCAGTCA
GGAagaaagacacttttttattctgctactggcagtttcatgccacttgg
gtgacaatcttcaggcaTATGGTTAGGTTGAAA Run BLAST on NCBI transcript from alignment at scaffold_471:46366..49927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067545 ID=TCONS_00067545|Name=TCONS_00067545|organism=Clytia hemisphaerica|type=transcript|length=3562bp|location=Sequence derived from alignment at scaffold_471:46366..49927+ (Clytia hemisphaerica)
aattaacaCAGCTTGGATATGATTGAATAATCTTGGGTGAGAGTACGGGT
AGTACACGCTGAGATTCACATTCTAGATAAAAACATGCTTTTTGGTACCC
GGaacttttagttttagtttttaaagtgttaatttttgttaaaatgttTA
GGGGAAACTAGATTCTCTCTAAATCAGTAATATAGAAGACAAGGGGAAGA
AAAGTCTCACTTGAAACTTTAcgttgaaagtttgaaaattgatttactct
ttttatatttcacaggtTCAATCACTGAATACAAATGTATCATATTGATT
TCAGCCCAAAGCAAAAGTGCAAAATCAAAACGCAATGAAACAACAACAAT
CCAAAATGGTTGACAACAAAGTCACCATCCGACGAAAAGATAAACATGTT
CCAATTCCGATCGAGGAATTGATCGATTACTACGGCTTCGGTAAACACAC
CATCAAAATGGTCATTCTTTTGAGTTGCGTTTGTTTCGCATACGGAGCTC
TTACTAACATTCTTGCCAACGTTATCTTAATCAATTGGGCGTGTGAACCG
GGCGATCGGGCGGATGAACCGCAACTCGTATGGGCAACTTTATGTATTGG
TTTGGCCCTTGGATCGTTTTACTTTGGCTGGTTGGCGGATCGGTACGGGC
GTAAATTAATGATTGCAGTTACGACCACACTCAGTTTATATTTCACACTA
CTTTTATGTGCTTCTGAAAGTCATTTCGATGctttattaattttattttt
cacagCGTCTGGCTTGAGTGGCGGAAGAATCATATCAAACTATTCTGCAG
AATCGTTCCCTGTCAAACACCGAGCTAGAATACAAACCGTTTTAGGATTA
TCATCTAGCCTTGGTTCAGTTGTTTATTCGTATCTAGCCTATACTCAGAG
ACTGGGCTGGCGTCATTTCACCCTTACAGCAAGTGCACcgttgattgttt
ttattgttatacCGTTTTGGCTACCCGAATCTATACCGTATTTACAAATG
ACCGGAAATGAAGACGAACTATACAGAGTGTTCCAGCATTTAGCAGAAAG
TCATGGAAAGAATTTAAAACGAAGAACTTTATTAACAGCGAGAACCATCA
AAAATAGAGGCAATCTCCCGACCTTGTTTTCAAAATCTACAATTTGTGGA
ACTTTGATCGTTATGTTGCTATGGGCAACGAGTCGTTTATCCATGAGTGT
TTCGACTGTGCTTCATTACAACACTATAGTGTTTAACAAGACAACATGTC
CAGAAAACCAAGTAGATATTCTACAAAGCTTGTCATTCAAAGAAGTACTC
AACTGCAAACACAGTTCAGATGTCTTTTACGTTTCATTTATTGGCTCTCT
TGCAGAATCAATTGGTCTCGCaatcacttttatttttatcaatcaTGTCA
GTCGAAGATTTGCTTTTATATGCTTGTTACTCATCAATTCGGCGGGATTT
ATTGCTATGAATATTTGCAGTGTAGCGACCATTCATACAGCTCTGGTTTT
AATAACTATGGCAACAAGTGCTAGTTTCTTTCAAGTACTTTGTATTTTCA
CCAACGAATTTTACCATGCTTCAGTTCGTTGCACTGCAACTGGGATGTTC
AATTTTATATCTTTATTAGCCTTGGTTTTGATCCCGATTTTGATTAGCCT
GAGTTTTGCATTGACTCCGATTGTAGTGACAGTGTTTTTTGTATCCTTTN
GATCGTTATGTTGCTATGGGCAACGAGTCGTTTATCCATGAGTGTTTCGA
CTGTGCTTCATTACAACACTATAGTGTTTAACAAGACAACATGTCCAGAA
AACCAAGTAGATATTCTACAAAGCTTGTCATTCAAAGAAGTACTCAACTG
CAAACACAGTTCAGATGTCTTTTACGTTTCATTTATTGGCTCTCTTGCAG
AATCAATTGGTCTCGCaatcacttttatttttatcaatcaTGTCAGTCGA
AGATTTGCTTTTATATGCTTGTTACTCATCAATTCGGCGGGATTTATTGC
TATGAATATTTGCAGTGTAGCGACCATTCATACAGCTCTGGTTTTAATAA
CTATGGCAACAAGTGCTAGTTTCTTTCAAGTACTTTGTATTTTCACCAAC
GAATTTTACCATGCTTCAGTTCGTTGCACTGCAACTGGGATGTTCAATTT
TATATCTTTATTAGCCTTGGTTTTGATCCCGATTTTGATTAGCCTGAGTT
TTGCATTGACTCCGATTGTAGTAACAGTGTTTTTTGTATCCTTTACTGTA
CTTTGTTGTTTCGGCTTGTGGTGGACCCGAATCAAAACAACATGAAATTC
AACGTGTTTGActtgattttgaaattgtttaGATTTATTCATTGCCATCA
AAGACTTAGTTGCCATGTATAATTTGTGAAATATTCCaatataaaaaagt
ttcagtttttatgatattatattttaatatactactttaggcgtacaaac
ttttgtgagcagaaactttcgtgagTTCAAAAAATCTcgaatttaacgaa
aaaatatttttcgcgagcataaactttcgcgtaTAGTATCCAGATTCCAG
ACacacagccaattcgattgacttccaaatttgccatactcaccaacttt
gccaaatctacaatctcaatgtcaaaagatcacagcttcatggcaaattt
gtacatcgctacGCCGCGATTATGATttccgttttgtgatgcttagtcag
cagttttctgtcggcgtttgtaaagcgaacgattttttaaccaatcagat
tgccgatcggcattgttttgctttagcattggaaggtcttctatttttca
aaatctttggcaaaagtggcaaaattggaaaaaagaaaagaaaagaacag
aggtctcgtgggaacagtgttttgtatggagacgtatggaggtaagttcc
aaaaatgccaagaatgccagattcaccacatcttttttatttggcattta
tggcactcaaattttgccacatttgccaaatttttgtcaatcgaatgcag
aataattggcaatcagggcaaaaatggcatattttgaagtcaatcgaatt
ggctgacAGTAGATCCCTTGGATCTGCTCACCCAGCTCAGACAAAAACGC
TCTTAGTTATTCGAatttcagttattcgaagcgATTTAATTCCCCTTAGA
GCCAATTTTAAGCTAATTCACCCTcagttattcgaatttttcttattGGG
AGATCGTCGAGTGAGaacattgattttctgtgattaaaaaacttttattc
ttcaaaaaaatcgTCAAGTTTCAGAATTCATGGCTATTTACACTCTTCAA
GTAATTTGAACATTCTccaacattttctttataacttTCATATTTTAAAA
CCTGTTAataatttgttcaaatttattCTCTCTTCAAAAAAGTAGAAATT
CTTTGTCTTTATCACGCTCAACTGAACCACAATGCCTCAATTACTTCAGA
AAAGTCCATATGGTTAAGTTGGTCAGTCAGGAagaaagacacttttttat
tctgctactggcagtttcatgccacttgggtgacaatcttcaggcaTATG
GTTAGGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067545-exon-scaffold_471-1491911889:46366..46401 | TCONS_00067545-exon-scaffold_471-1491911889:46366..46401 | Clytia hemisphaerica | exon |
| TCONS_00067545-exon-scaffold_471-1510915933:46366..46401 | TCONS_00067545-exon-scaffold_471-1510915933:46366..46401 | Clytia hemisphaerica | exon |
| TCONS_00067545-exon-scaffold_471-1575043694:46366..46401 | TCONS_00067545-exon-scaffold_471-1575043694:46366..46401 | Clytia hemisphaerica | exon |
| TCONS_00067545-exon-scaffold_471-1491911889:46631..49927 | TCONS_00067545-exon-scaffold_471-1491911889:46631..49927 | Clytia hemisphaerica | exon |
| TCONS_00067545-exon-scaffold_471-1510915933:46631..49927 | TCONS_00067545-exon-scaffold_471-1510915933:46631..49927 | Clytia hemisphaerica | exon |
| TCONS_00067545-exon-scaffold_471-1575043694:46631..49927 | TCONS_00067545-exon-scaffold_471-1575043694:46631..49927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:46366..49927 + |
Blast
BLAST of TCONS_00067545 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 7.421e-19 Identity = 100/430 (23.26%), Postives = 201/430 (46.74%), Query Frame = 1
Query: 181 IEELIDYYGFGKHTIKMVILLSCVCFAYGALTNILANVILINWACEPGDRADEPQLVWATLCIGLALGSFYFGWLADRYGRKLMIAVXXXXXXXXXXXXCASESHFDALLILFFTASGLSGGRIISNYSAESFPVKHRARIQTXXXXXXXXXXXXXXXXAY--TQRLGWRHFTLTASAPLIVFIVIPFWLPESIPYLQMTGNEDELYRVFQHLAESHGKNLKRRTLLTARTIKNRGNLPTLFSKSTICGTLIVMLLWATSRLSMSVSTVLHYNTIVFNKTTCPENQVDILQS----LSFKEVLNCKHSSDVFYVSFI-GSLAESIGLAITFIFINHVSRRFAFICLLLINSAGFIAMNICSVATIHTALVLITMATSASFFQVLCIFTNEFYHASVRC----TATGMFNFISLLALVLIPILISLSFALT 1437
+E+ ++ GFGK K+ +L A A+ ++ +++ CE + + L+ + + +G+ S +G ++D+YGRK + ++ +LY+ +L + + L++ G+ G AE P+K RA+ ++ + ++G+V LA LGWR + ++ PL++F V+ FWLPES Y ++GN+++ + +A +G + L+ +R ++RG + LF+ TL++ +W ++ S +Y ++ V + S + K L C++ S+ Y+ + +L+E G+ +T I+ + R+ +I S + + IC + T L+ I A + FQ ++T E Y + R T +GM +L+ + +++ S LT
Sbjct: 70 VEDAVEAIGFGKFQWKLSVLTGLAWMA-DAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-EDRGKMRDLFTPHFRWTTLLLWFIWFSNAFS-------YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT 490
The following BLAST results are available for this feature:
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