TCONS_00067542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067542
Unique NameTCONS_00067542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067542 ID=TCONS_00067542|Name=TCONS_00067542|organism=Clytia hemisphaerica|type=transcript|length=371bp
CTCTGACCGTGTTTTATGGGAAGTATTTGCTTATTTTTGACCGTGGTTAT
GGTAAGAGATGAATTAGGTTCAACATGATTCTCTTTTATCAGAAGTTAAA
GACAAATGATGCACTTttagtcaaaatatttaaatatattaGTTAAGAGG
AAAGCCAAATTAATTCCTATCATTGTTGATCTCTCATGCATATAATACTG
ACCGTGTTTTATGGGAAGTACTTGCTTATCTCTGACCGTGGTTATGGTAA
GAGATGAAAGGTTCATCATGATTCTCTTTTATCAgaagttaaagaaaaat
tatgaacttttagtcaaaatatttaaatatattaGTTAAGAGGAAAGTCA
AATTGATTTCTATCATTGTTN
Run BLAST on NCBI

transcript from alignment at scaffold_470:68833..69203

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067542 ID=TCONS_00067542|Name=TCONS_00067542|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_470:68833..69203 (Clytia hemisphaerica)
NAACAATGATAGAAATCAATTTGACTTTCCTCTTAACtaatatatttaaa
tattttgactaaaagttcataatttttctttaacttcTGATAAAAGAGAA
TCATGATGAACCTTTCATCTCTTACCATAACCACGGTCAGAGATAAGCAA
GTACTTCCCATAAAACACGGTCAGTATTATATGCATGAGAGATCAACAAT
GATAGGAATTAATTTGGCTTTCCTCTTAACtaatatatttaaatattttg
actaaAAGTGCATCATTTGTCTTTAACTTCTGATAAAAGAGAATCATGTT
GAACCTAATTCATCTCTTACCATAACCACGGTCAAAAATAAGCAAATACT
TCCCATAAAACACGGTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042184XLOC_042184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067542-exon-scaffold_470-1491911889:68833..69203TCONS_00067542-exon-scaffold_470-1491911889:68833..69203Clytia hemisphaericaexon
TCONS_00067542-exon-scaffold_470-1510915933:68833..69203TCONS_00067542-exon-scaffold_470-1510915933:68833..69203Clytia hemisphaericaexon
TCONS_00067542-exon-scaffold_470-1575043694:68833..69203TCONS_00067542-exon-scaffold_470-1575043694:68833..69203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_470supercontigscaffold_470:68833..69203 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.971304	0.735725	1.75972	1.40164	1.1591	1.12126	1.90165	2.00575	1.30133	1.21647	0.236568	1.09739	0.655902	1.42769	2.49852	1.13453	1.11031	0.91636	1.28135	1.29617	3.03474	2.06653	1.24864	2.95692	0	0.419694	1.57417	0.928004	3.41257	4.25046
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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