TCONS_00067542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067542
Unique NameTCONS_00067542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067542 ID=TCONS_00067542|Name=TCONS_00067542|organism=Clytia hemisphaerica|type=transcript|length=371bp
CTCTGACCGTGTTTTATGGGAAGTATTTGCTTATTTTTGACCGTGGTTAT
GGTAAGAGATGAATTAGGTTCAACATGATTCTCTTTTATCAGAAGTTAAA
GACAAATGATGCACTTttagtcaaaatatttaaatatattaGTTAAGAGG
AAAGCCAAATTAATTCCTATCATTGTTGATCTCTCATGCATATAATACTG
ACCGTGTTTTATGGGAAGTACTTGCTTATCTCTGACCGTGGTTATGGTAA
GAGATGAAAGGTTCATCATGATTCTCTTTTATCAgaagttaaagaaaaat
tatgaacttttagtcaaaatatttaaatatattaGTTAAGAGGAAAGTCA
AATTGATTTCTATCATTGTTN
Run BLAST on NCBI

transcript from alignment at scaffold_470:68833..69203

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067542 ID=TCONS_00067542|Name=TCONS_00067542|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_470:68833..69203 (Clytia hemisphaerica)
NAACAATGATAGAAATCAATTTGACTTTCCTCTTAACtaatatatttaaa tattttgactaaaagttcataatttttctttaacttcTGATAAAAGAGAA TCATGATGAACCTTTCATCTCTTACCATAACCACGGTCAGAGATAAGCAA GTACTTCCCATAAAACACGGTCAGTATTATATGCATGAGAGATCAACAAT GATAGGAATTAATTTGGCTTTCCTCTTAACtaatatatttaaatattttg actaaAAGTGCATCATTTGTCTTTAACTTCTGATAAAAGAGAATCATGTT GAACCTAATTCATCTCTTACCATAACCACGGTCAAAAATAAGCAAATACT TCCCATAAAACACGGTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042184XLOC_042184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067542-exon-scaffold_470-1491911889:68833..69203TCONS_00067542-exon-scaffold_470-1491911889:68833..69203Clytia hemisphaericaexon
TCONS_00067542-exon-scaffold_470-1510915933:68833..69203TCONS_00067542-exon-scaffold_470-1510915933:68833..69203Clytia hemisphaericaexon
TCONS_00067542-exon-scaffold_470-1575043694:68833..69203TCONS_00067542-exon-scaffold_470-1575043694:68833..69203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_470supercontigscaffold_470:68833..69203 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.971304 0.735725 1.75972 1.40164 1.1591 1.12126 1.90165 2.00575 1.30133 1.21647 0.236568 1.09739 0.655902 1.42769 2.49852 1.13453 1.11031 0.91636 1.28135 1.29617 3.03474 2.06653 1.24864 2.95692 0 0.419694 1.57417 0.928004 3.41257 4.25046
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top