TCONS_00067528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067528
Unique NameTCONS_00067528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067528 ID=TCONS_00067528|Name=TCONS_00067528|organism=Clytia hemisphaerica|type=transcript|length=334bp
NNGGAGAAGAAAGATTCGATGTAAATACAACTCGAGTGATTAGTGAAGGT
GTATCCTTCGTTATGGGAAACTACTCATTTTCTCATTTCGTGAGTAATGG
AACAGTTGAATGTCTAATTGAAATCGGTGAAGAGAAATTCACTTCTAACA
GCTCTATGTTGTACCAAATCCCAGTATACCAAAATGTACCTGAAATGCAA
AGTATCCAACCAAACGGTGTGACAGTATCGGGATGTCAATTCCAATTCCA
CCAGGATCTGAAAGGGTTTGCAAGTTTAGTTGGCTACGATGGGAACCAAA
GAGAAATCAGTAATACCCAATCAAATTTGGTCNN
Run BLAST on NCBI

protein sequence of TCONS_00067528-protein

>TCONS_00067528-protein ID=TCONS_00067528-protein|Name=TCONS_00067528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
GEERFDVNTTRVISEGVSFVMGNYSFSHFVSNGTVECLIEIGEEKFTSNS
SMLYQIPVYQNVPEMQSIQPNGVTVSGCQFQFHQDLKGFASLVGYDGNQR
EISNTQSNLV
Run BLAST on NCBI

transcript from alignment at scaffold_47:262263..262596

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067528 ID=TCONS_00067528|Name=TCONS_00067528|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at scaffold_47:262263..262596 (Clytia hemisphaerica)
NNGACCAAATTTGATTGGGTATTACTGATTTCTCTTTGGTTCCCATCGTA
GCCAACTAAACTTGCAAACCCTTTCAGATCCTGGTGGAATTGGAATTGAC
ATCCCGATACTGTCACACCGTTTGGTTGGATACTTTGCATTTCAGGTACA
TTTTGGTATACTGGGATTTGGTACAACATAGAGCTGTTAGAAGTGAATTT
CTCTTCACCGATTTCAATTAGACATTCAACTGTTCCATTACTCACGAAAT
GAGAAAATGAGTAGTTTCCCATAACGAAGGATACACCTTCACTAATCACT
CGAGTTGTATTTACATCGAATCTTTCTTCTCCNN

Coding sequence (CDS) from alignment at scaffold_47:262263..262596

>TCONS_00067528 ID=TCONS_00067528|Name=TCONS_00067528|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_47:262263..262596 (Clytia hemisphaerica)
GACCAAATTTGATTGGGTATTACTGATTTCTCTTTGGTTCCCATCGTAGC
CAACTAAACTTGCAAACCCTTTCAGATCCTGGTGGAATTGGAATTGACAT
CCCGATACTGTCACACCGTTTGGTTGGATACTTTGCATTTCAGGTACATT
TTGGTATACTGGGATTTGGTACAACATAGAGCTGTTAGAAGTGAATTTCT
CTTCACCGATTTCAATTAGACATTCAACTGTTCCATTACTCACGAAATGA
GAAAATGAGTAGTTTCCCATAACGAAGGATACACCTTCACTAATCACTCG
AGTTGTATTTACATCGAATCTTTCTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042170XLOC_042170Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067528-proteinTCONS_00067528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067528-exon-scaffold_47-1491911889:262263..262596TCONS_00067528-exon-scaffold_47-1491911889:262263..262596Clytia hemisphaericaexon
TCONS_00067528-exon-scaffold_47-1510915933:262263..262596TCONS_00067528-exon-scaffold_47-1510915933:262263..262596Clytia hemisphaericaexon
TCONS_00067528-exon-scaffold_47-1575043694:262263..262596TCONS_00067528-exon-scaffold_47-1575043694:262263..262596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:262263..262596 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.95549	4.95911	2.24947	1.88636	0.382743	0.907346	0	0.341607	0.239167	1.18499	1.7211	0.189021	2.07032	1.1705	3.06205	5.87972	20.6564	14.4083	0.301704	0.947134	29.5536	12.8019	7.15667	12.1088	92.2446	112.437	61.0482	67.6186	4.41021	6.09805
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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