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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067526 ID=TCONS_00067526|Name=TCONS_00067526|organism=Clytia hemisphaerica|type=transcript|length=1295bp
CTGCGACAAACAAAATAAGTTGGTTGTAGTATAAAGAGATTCTCTAATAA
AAAtggatttgaaaaaatatagtCTGGCAATTACAATAATTGTTGTTTAT
TTGATAACAATTATGATGTGCACGATTTGGATTCCCATAGCTGGACACGT
TACTTTCAAATTAACTTGTACATCAAATGGCTCTTTCCTCTGTAACATAT
GGCCTGTTGTTGATCATTCAAACAACCTAATGAATGTTACTGTACTTATC
GTTGCAGGCGTGTGGACATTGTTTTGGAACACGATATTGATCGGTATCCT
TCAAATATCACGCCAGATTGAAAAGTCCGCCGTATTCTTGTTCCAGTACA
CATTATTCCTACAAGTCTTGATGCTTGGAGTTATCATGAACCATTACGTG
AATGCTTTTATCATTCAGCATGAAAACGACGATGACGAAGATTTCTATAT
TGACAGAATCGGAGAGTTTTCGTCAATAACTCAACaattatttttgtgtt
tttacgtTGGGTTTCGTTTGTATTTAACGTACAGAAACAATGGCACAATG
ATCATATTTGCAGCCTATAAAGTTTTTCTTCTCGTTTTGATTACCGGGTT
AGTGTTTGCTATTACTTATGGGGCACAAGAAAGCGACATAGGATTTATGA
ACGTTGCCTGTATATCGATGCCAACCGTCACCGTCTTTTTCTTGTTATAC
ACGATGTGTCGCCGTAGCAATCACCAGGAGAACAAGATCCAACAACATAC
AGTTTGGTTCTTCTTCCTAATCAATCTCGCGAATGTTATCTCGTGGACGA
TTTTAATAAATGTCTTAGCTCAACATGACCAAATGTtcaaaatgtatcaa
aattGTGAGGAACAAGACAATTGTCAATtcgaacaattaaaaaacagtTA
TTTTGTTTTCCCAATAATCTGCCCATCATTGAGCGCTTTTGCCAGCATTG
TGTCAGACGTCCATCTTCGCAAAATGTTCCTTCAACTGTTCAACTTACAA
AAATGTTTGACAAAGAAACCAGAACACAGAGGAGATGAAAACAAACCTCT
TATTGGACCTCACGAACAGGAATACGATAACAGCAGGCCTCACCAACAAG
TACCTAAGAATTGGCAGACCCAATACGGTGCACATCAACCAAGATATGAA
TCTGACTATCACACCATGCCTCATGAATCTCCAAAACAGAATGTTTCAAT
AGGAGCACACGAAGAGAAGTTAGATATCGAATCGAATTTCCGAGCAATGG
CTCATGAACCAACAGAATATGATGTAACCAAGGGAGCTCACAAGG Run BLAST on NCBI protein sequence of TCONS_00067526-protein >TCONS_00067526-protein ID=TCONS_00067526-protein|Name=TCONS_00067526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MDLKKYSLAITIIVVYLITIMMCTIWIPIAGHVTFKLTCTSNGSFLCNIW
PVVDHSNNLMNVTVLIVAGVWTLFWNTILIGILQISRQIEKSAVFLFQYT
LFLQVLMLGVIMNHYVNAFIIQHENDDDEDFYIDRIGEFSSITQQLFLCF
YVGFRLYLTYRNNGTMIIFAAYKVFLLVLITGLVFAITYGAQESDIGFMN
VACISMPTVTVFFLLYTMCRRSNHQENKIQQHTVWFFFLINLANVISWTI
LINVLAQHDQMFKMYQNCEEQDNCQFEQLKNSYFVFPIICPSLSAFASIV
SDVHLRKMFLQLFNLQKCLTKKPEHRGDENKPLIGPHEQEYDNSRPHQQV
PKNWQTQYGAHQPRYESDYHTMPHESPKQNVSIGAHEEKLDIESNFRAMA
HEPTEYDVTKGAHK Run BLAST on NCBI transcript from alignment at scaffold_47:187102..188396 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067526 ID=TCONS_00067526|Name=TCONS_00067526|organism=Clytia hemisphaerica|type=transcript|length=1295bp|location=Sequence derived from alignment at scaffold_47:187102..188396 (Clytia hemisphaerica)
CCTTGTGAGCTCCCTTGGTTACATCATATTCTGTTGGTTCATGAGCCATT
GCTCGGAAATTCGATTCGATATCTAACTTCTCTTCGTGTGCTCCTATTGA
AACATTCTGTTTTGGAGATTCATGAGGCATGGTGTGATAGTCAGATTCAT
ATCTTGGTTGATGTGCACCGTATTGGGTCTGCCAATTCTTAGGTACTTGT
TGGTGAGGCCTGCTGTTATCGTATTCCTGTTCGTGAGGTCCAATAAGAGG
TTTGTTTTCATCTCCTCTGTGTTCTGGTTTCTTTGTCAAACATTTTTGTA
AGTTGAACAGTTGAAGGAACATTTTGCGAAGATGGACGTCTGACACAATG
CTGGCAAAAGCGCTCAATGATGGGCAGATTATTGGGAAAACAAAATAact
gttttttaattgttcgaATTGACAATTGTCTTGTTCCTCACaattttgat
acattttgaACATTTGGTCATGTTGAGCTAAGACATTTATTAAAATCGTC
CACGAGATAACATTCGCGAGATTGATTAGGAAGAAGAACCAAACTGTATG
TTGTTGGATCTTGTTCTCCTGGTGATTGCTACGGCGACACATCGTGTATA
ACAAGAAAAAGACGGTGACGGTTGGCATCGATATACAGGCAACGTTCATA
AATCCTATGTCGCTTTCTTGTGCCCCATAAGTAATAGCAAACACTAACCC
GGTAATCAAAACGAGAAGAAAAACTTTATAGGCTGCAAATATGATCATTG
TGCCATTGTTTCTGTACGTTAAATACAAACGAAACCCAacgtaaaaacac
aaaaataattGTTGAGTTATTGACGAAAACTCTCCGATTCTGTCAATATA
GAAATCTTCGTCATCGTCGTTTTCATGCTGAATGATAAAAGCATTCACGT
AATGGTTCATGATAACTCCAAGCATCAAGACTTGTAGGAATAATGTGTAC
TGGAACAAGAATACGGCGGACTTTTCAATCTGGCGTGATATTTGAAGGAT
ACCGATCAATATCGTGTTCCAAAACAATGTCCACACGCCTGCAACGATAA
GTACAGTAACATTCATTAGGTTGTTTGAATGATCAACAACAGGCCATATG
TTACAGAGGAAAGAGCCATTTGATGTACAAGTTAATTTGAAAGTAACGTG
TCCAGCTATGGGAATCCAAATCGTGCACATCATAATTGTTATCAAATAAA
CAACAATTATTGTAATTGCCAGactatattttttcaaatccaTTTTTATT
AGAGAATCTCTTTATACTACAACCAACTTATTTTGTTTGTCGCAG Coding sequence (CDS) from alignment at scaffold_47:187102..188396 >TCONS_00067526 ID=TCONS_00067526|Name=TCONS_00067526|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_47:187102..188396 (Clytia hemisphaerica)
CTTGTGAGCTCCCTTGGTTACATCATATTCTGTTGGTTCATGAGCCATTG
CTCGGAAATTCGATTCGATATCTAACTTCTCTTCGTGTGCTCCTATTGAA
ACATTCTGTTTTGGAGATTCATGAGGCATGGTGTGATAGTCAGATTCATA
TCTTGGTTGATGTGCACCGTATTGGGTCTGCCAATTCTTAGGTACTTGTT
GGTGAGGCCTGCTGTTATCGTATTCCTGTTCGTGAGGTCCAATAAGAGGT
TTGTTTTCATCTCCTCTGTGTTCTGGTTTCTTTGTCAAACATTTTTGTAA
GTTGAACAGTTGAAGGAACATTTTGCGAAGATGGACGTCTGACACAATGC
TGGCAAAAGCGCTCAATGATGGGCAGATTATTGGGAAAACAAAATAactg
ttttttaattgttcgaATTGACAATTGTCTTGTTCCTCACaattttgata
cattttgaACATTTGGTCATGTTGAGCTAAGACATTTATTAAAATCGTCC
ACGAGATAACATTCGCGAGATTGATTAGGAAGAAGAACCAAACTGTATGT
TGTTGGATCTTGTTCTCCTGGTGATTGCTACGGCGACACATCGTGTATAA
CAAGAAAAAGACGGTGACGGTTGGCATCGATATACAGGCAACGTTCATAA
ATCCTATGTCGCTTTCTTGTGCCCCATAAGTAATAGCAAACACTAACCCG
GTAATCAAAACGAGAAGAAAAACTTTATAGGCTGCAAATATGATCATTGT
GCCATTGTTTCTGTACGTTAAATACAAACGAAACCCAacgtaaaaacaca
aaaataattGTTGAGTTATTGACGAAAACTCTCCGATTCTGTCAATATAG
AAATCTTCGTCATCGTCGTTTTCATGCTGAATGATAAAAGCATTCACGTA
ATGGTTCATGATAACTCCAAGCATCAAGACTTGTAGGAATAATGTGTACT
GGAACAAGAATACGGCGGACTTTTCAATCTGGCGTGATATTTGAAGGATA
CCGATCAATATCGTGTTCCAAAACAATGTCCACACGCCTGCAACGATAAG
TACAGTAACATTCATTAGGTTGTTTGAATGATCAACAACAGGCCATATGT
TACAGAGGAAAGAGCCATTTGATGTACAAGTTAATTTGAAAGTAACGTGT
CCAGCTATGGGAATCCAAATCGTGCACATCATAATTGTTATCAAATAAAC
AACAATTATTGTAATTGCCAGactatattttttcaaatccaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067526-exon-scaffold_47-1491911889:187102..188396 | TCONS_00067526-exon-scaffold_47-1491911889:187102..188396 | Clytia hemisphaerica | exon |
| TCONS_00067526-exon-scaffold_47-1510915933:187102..188396 | TCONS_00067526-exon-scaffold_47-1510915933:187102..188396 | Clytia hemisphaerica | exon |
| TCONS_00067526-exon-scaffold_47-1575043694:187102..188396 | TCONS_00067526-exon-scaffold_47-1575043694:187102..188396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:187102..188396 . |
Blast
The following BLAST results are available for this feature:
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