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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067526 ID=TCONS_00067526|Name=TCONS_00067526|organism=Clytia hemisphaerica|type=transcript|length=1295bp CTGCGACAAACAAAATAAGTTGGTTGTAGTATAAAGAGATTCTCTAATAA AAAtggatttgaaaaaatatagtCTGGCAATTACAATAATTGTTGTTTAT TTGATAACAATTATGATGTGCACGATTTGGATTCCCATAGCTGGACACGT TACTTTCAAATTAACTTGTACATCAAATGGCTCTTTCCTCTGTAACATAT GGCCTGTTGTTGATCATTCAAACAACCTAATGAATGTTACTGTACTTATC GTTGCAGGCGTGTGGACATTGTTTTGGAACACGATATTGATCGGTATCCT TCAAATATCACGCCAGATTGAAAAGTCCGCCGTATTCTTGTTCCAGTACA CATTATTCCTACAAGTCTTGATGCTTGGAGTTATCATGAACCATTACGTG AATGCTTTTATCATTCAGCATGAAAACGACGATGACGAAGATTTCTATAT TGACAGAATCGGAGAGTTTTCGTCAATAACTCAACaattatttttgtgtt tttacgtTGGGTTTCGTTTGTATTTAACGTACAGAAACAATGGCACAATG ATCATATTTGCAGCCTATAAAGTTTTTCTTCTCGTTTTGATTACCGGGTT AGTGTTTGCTATTACTTATGGGGCACAAGAAAGCGACATAGGATTTATGA ACGTTGCCTGTATATCGATGCCAACCGTCACCGTCTTTTTCTTGTTATAC ACGATGTGTCGCCGTAGCAATCACCAGGAGAACAAGATCCAACAACATAC AGTTTGGTTCTTCTTCCTAATCAATCTCGCGAATGTTATCTCGTGGACGA TTTTAATAAATGTCTTAGCTCAACATGACCAAATGTtcaaaatgtatcaa aattGTGAGGAACAAGACAATTGTCAATtcgaacaattaaaaaacagtTA TTTTGTTTTCCCAATAATCTGCCCATCATTGAGCGCTTTTGCCAGCATTG TGTCAGACGTCCATCTTCGCAAAATGTTCCTTCAACTGTTCAACTTACAA AAATGTTTGACAAAGAAACCAGAACACAGAGGAGATGAAAACAAACCTCT TATTGGACCTCACGAACAGGAATACGATAACAGCAGGCCTCACCAACAAG TACCTAAGAATTGGCAGACCCAATACGGTGCACATCAACCAAGATATGAA TCTGACTATCACACCATGCCTCATGAATCTCCAAAACAGAATGTTTCAAT AGGAGCACACGAAGAGAAGTTAGATATCGAATCGAATTTCCGAGCAATGG CTCATGAACCAACAGAATATGATGTAACCAAGGGAGCTCACAAGG Run BLAST on NCBI protein sequence of TCONS_00067526-protein >TCONS_00067526-protein ID=TCONS_00067526-protein|Name=TCONS_00067526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MDLKKYSLAITIIVVYLITIMMCTIWIPIAGHVTFKLTCTSNGSFLCNIW PVVDHSNNLMNVTVLIVAGVWTLFWNTILIGILQISRQIEKSAVFLFQYT LFLQVLMLGVIMNHYVNAFIIQHENDDDEDFYIDRIGEFSSITQQLFLCF YVGFRLYLTYRNNGTMIIFAAYKVFLLVLITGLVFAITYGAQESDIGFMN VACISMPTVTVFFLLYTMCRRSNHQENKIQQHTVWFFFLINLANVISWTI LINVLAQHDQMFKMYQNCEEQDNCQFEQLKNSYFVFPIICPSLSAFASIV SDVHLRKMFLQLFNLQKCLTKKPEHRGDENKPLIGPHEQEYDNSRPHQQV PKNWQTQYGAHQPRYESDYHTMPHESPKQNVSIGAHEEKLDIESNFRAMA HEPTEYDVTKGAHK Run BLAST on NCBI transcript from alignment at scaffold_47:187102..188396 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067526 ID=TCONS_00067526|Name=TCONS_00067526|organism=Clytia hemisphaerica|type=transcript|length=1295bp|location=Sequence derived from alignment at scaffold_47:187102..188396 (Clytia hemisphaerica) CCTTGTGAGCTCCCTTGGTTACATCATATTCTGTTGGTTCATGAGCCATT
GCTCGGAAATTCGATTCGATATCTAACTTCTCTTCGTGTGCTCCTATTGA
AACATTCTGTTTTGGAGATTCATGAGGCATGGTGTGATAGTCAGATTCAT
ATCTTGGTTGATGTGCACCGTATTGGGTCTGCCAATTCTTAGGTACTTGT
TGGTGAGGCCTGCTGTTATCGTATTCCTGTTCGTGAGGTCCAATAAGAGG
TTTGTTTTCATCTCCTCTGTGTTCTGGTTTCTTTGTCAAACATTTTTGTA
AGTTGAACAGTTGAAGGAACATTTTGCGAAGATGGACGTCTGACACAATG
CTGGCAAAAGCGCTCAATGATGGGCAGATTATTGGGAAAACAAAATAact
gttttttaattgttcgaATTGACAATTGTCTTGTTCCTCACaattttgat
acattttgaACATTTGGTCATGTTGAGCTAAGACATTTATTAAAATCGTC
CACGAGATAACATTCGCGAGATTGATTAGGAAGAAGAACCAAACTGTATG
TTGTTGGATCTTGTTCTCCTGGTGATTGCTACGGCGACACATCGTGTATA
ACAAGAAAAAGACGGTGACGGTTGGCATCGATATACAGGCAACGTTCATA
AATCCTATGTCGCTTTCTTGTGCCCCATAAGTAATAGCAAACACTAACCC
GGTAATCAAAACGAGAAGAAAAACTTTATAGGCTGCAAATATGATCATTG
TGCCATTGTTTCTGTACGTTAAATACAAACGAAACCCAacgtaaaaacac
aaaaataattGTTGAGTTATTGACGAAAACTCTCCGATTCTGTCAATATA
GAAATCTTCGTCATCGTCGTTTTCATGCTGAATGATAAAAGCATTCACGT
AATGGTTCATGATAACTCCAAGCATCAAGACTTGTAGGAATAATGTGTAC
TGGAACAAGAATACGGCGGACTTTTCAATCTGGCGTGATATTTGAAGGAT
ACCGATCAATATCGTGTTCCAAAACAATGTCCACACGCCTGCAACGATAA
GTACAGTAACATTCATTAGGTTGTTTGAATGATCAACAACAGGCCATATG
TTACAGAGGAAAGAGCCATTTGATGTACAAGTTAATTTGAAAGTAACGTG
TCCAGCTATGGGAATCCAAATCGTGCACATCATAATTGTTATCAAATAAA
CAACAATTATTGTAATTGCCAGactatattttttcaaatccaTTTTTATT
AGAGAATCTCTTTATACTACAACCAACTTATTTTGTTTGTCGCAG Coding sequence (CDS) from alignment at scaffold_47:187102..188396 >TCONS_00067526 ID=TCONS_00067526|Name=TCONS_00067526|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_47:187102..188396 (Clytia hemisphaerica) CTTGTGAGCTCCCTTGGTTACATCATATTCTGTTGGTTCATGAGCCATTG CTCGGAAATTCGATTCGATATCTAACTTCTCTTCGTGTGCTCCTATTGAA ACATTCTGTTTTGGAGATTCATGAGGCATGGTGTGATAGTCAGATTCATA TCTTGGTTGATGTGCACCGTATTGGGTCTGCCAATTCTTAGGTACTTGTT GGTGAGGCCTGCTGTTATCGTATTCCTGTTCGTGAGGTCCAATAAGAGGT TTGTTTTCATCTCCTCTGTGTTCTGGTTTCTTTGTCAAACATTTTTGTAA GTTGAACAGTTGAAGGAACATTTTGCGAAGATGGACGTCTGACACAATGC TGGCAAAAGCGCTCAATGATGGGCAGATTATTGGGAAAACAAAATAactg ttttttaattgttcgaATTGACAATTGTCTTGTTCCTCACaattttgata cattttgaACATTTGGTCATGTTGAGCTAAGACATTTATTAAAATCGTCC ACGAGATAACATTCGCGAGATTGATTAGGAAGAAGAACCAAACTGTATGT TGTTGGATCTTGTTCTCCTGGTGATTGCTACGGCGACACATCGTGTATAA CAAGAAAAAGACGGTGACGGTTGGCATCGATATACAGGCAACGTTCATAA ATCCTATGTCGCTTTCTTGTGCCCCATAAGTAATAGCAAACACTAACCCG GTAATCAAAACGAGAAGAAAAACTTTATAGGCTGCAAATATGATCATTGT GCCATTGTTTCTGTACGTTAAATACAAACGAAACCCAacgtaaaaacaca aaaataattGTTGAGTTATTGACGAAAACTCTCCGATTCTGTCAATATAG AAATCTTCGTCATCGTCGTTTTCATGCTGAATGATAAAAGCATTCACGTA ATGGTTCATGATAACTCCAAGCATCAAGACTTGTAGGAATAATGTGTACT GGAACAAGAATACGGCGGACTTTTCAATCTGGCGTGATATTTGAAGGATA CCGATCAATATCGTGTTCCAAAACAATGTCCACACGCCTGCAACGATAAG TACAGTAACATTCATTAGGTTGTTTGAATGATCAACAACAGGCCATATGT TACAGAGGAAAGAGCCATTTGATGTACAAGTTAATTTGAAAGTAACGTGT CCAGCTATGGGAATCCAAATCGTGCACATCATAATTGTTATCAAATAAAC AACAATTATTGTAATTGCCAGactatattttttcaaatccaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067526-exon-scaffold_47-1491911889:187102..188396 | TCONS_00067526-exon-scaffold_47-1491911889:187102..188396 | Clytia hemisphaerica | exon |
TCONS_00067526-exon-scaffold_47-1510915933:187102..188396 | TCONS_00067526-exon-scaffold_47-1510915933:187102..188396 | Clytia hemisphaerica | exon |
TCONS_00067526-exon-scaffold_47-1575043694:187102..188396 | TCONS_00067526-exon-scaffold_47-1575043694:187102..188396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_47 | supercontig | scaffold_47:187102..188396 . |
Blast
The following BLAST results are available for this feature:
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