|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067525 ID=TCONS_00067525|Name=TCONS_00067525|organism=Clytia hemisphaerica|type=transcript|length=1096bp
CTTGACTTGTCTTGcccacaaaccaaattcttGCAAATCCATTAAAGGAT
AAACTTCCGTGCTTCAATGCCTCAGAGTGTTTGTGCCCGTTCCCCGTTTA
TTGATTGTCGAATTTAAAGTAGAAGAAAAATTTCCGGGTATAAGTTTGAA
CAACAATCACGTATAATTTTGAACATTTGACTTGGAATTTAATTATATGG
AACTTCAATGGAAGTTCCATAGTTTGAGAAATCGCAAAATATATGCGTCA
AGGTTACTTGTGTCTTTTGTACATGACGTTTGTCAGCCTGTTAAAAAGTA
ACTATCATTCTCTGTGCTATAACTTCATTACTTTTACTCCAAGACTAGCA
GCTTTTATgtggcactgagacaggggtatatttAGAATAGAGACTTTTTA
GACCTAGTGTACTCATTTTTAACGGACAAGACATGCCCAGTGAGAACCAT
ATCCattggaaaaaaatcgtcaTCCTATATGGAAACTTCACTTGTATGTA
TAAGACGAGTAATGAATCTAGTAATTCAGACTGGATCTCTGTACTATTAT
CGTAAAATCTAAATCCACTAAAAACAGACCTTTGTTCTATTGGTTTTTAT
GTTCTTTTATGTCCCTTTCCTAACGGGCTAATAAACGACTCGGACTTTTT
GAGACGGGGACGTTCCCCTCGAACAAATGAAACATGTATGACAACGCTTC
CACTTTTTTCAGAATATCGCTGACTTAAAGACGAAGGGCACGATGAACCA
AATATCATCGTCAAGCTGTGAAGTAAAAAGTGGTGGTAGTGTTACCTAAT
TGTAATTTATCGAAGGTGTACGTAAGGTAAAAAAGCTAAAAGAATAAAGT
TTATTTGgccaaaaaatataaaagccatggatcattttaaaaatatcctt
atcttcttttcgtttttcttctaGCGCCGGACGAGATTTCTAGATAGAGA
TAAATGAAATATATAGAGTCCCTCATTAAAAGCACCCCGTGCTCATCACA
GTACAGCCCCATtggaaaatttagccaaatttcatttcatggaaaattaa
ctttgatttaatcttcatttgaaattcaatagatttatatccccat Run BLAST on NCBI transcript from alignment at scaffold_47:161730..162825 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067525 ID=TCONS_00067525|Name=TCONS_00067525|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at scaffold_47:161730..162825 (Clytia hemisphaerica)
atggggatataaatctattgaatttcaaatgaagattaaatcaaagttaa
ttttccatgaaatgaaatttggctaaattttccaATGGGGCTGTACTGTG
ATGAGCACGGGGTGCTTTTAATGAGGGACTCTATATATTTCATTTATCTC
TATCTAGAAATCTCGTCCGGCGCtagaagaaaaacgaaaagaagataagg
atatttttaaaatgatccatggcttttatattttttggcCAAATAAACTT
TATTCTTTTAGCTTTTTTACCTTACGTACACCTTCGATAAATTACAATTA
GGTAACACTACCACCACTTTTTACTTCACAGCTTGACGATGATATTTGGT
TCATCGTGCCCTTCGTCTTTAAGTCAGCGATATTCTGAAAAAAGTGGAAG
CGTTGTCATACATGTTTCATTTGTTCGAGGGGAACGTCCCCGTCTCAAAA
AGTCCGAGTCGTTTATTAGCCCGTTAGGAAAGGGACATAAAAGAACATAA
AAACCAATAGAACAAAGGTCTGTTTTTAGTGGATTTAGATTTTACGATAA
TAGTACAGAGATCCAGTCTGAATTACTAGATTCATTACTCGTCTTATACA
TACAAGTGAAGTTTCCATATAGGAtgacgatttttttccaatGGATATGG
TTCTCACTGGGCATGTCTTGTCCGTTAAAAATGAGTACACTAGGTCTAAA
AAGTCTCTATTCTaaatatacccctgtctcagtgccacATAAAAGCTGCT
AGTCTTGGAGTAAAAGTAATGAAGTTATAGCACAGAGAATGATAGTTACT
TTTTAACAGGCTGACAAACGTCATGTACAAAAGACACAAGTAACCTTGAC
GCATATATTTTGCGATTTCTCAAACTATGGAACTTCCATTGAAGTTCCAT
ATAATTAAATTCCAAGTCAAATGTTCAAAATTATACGTGATTGTTGTTCA
AACTTATACCCGGAAATTTTTCTTCTACTTTAAATTCGACAATCAATAAA
CGGGGAACGGGCACAAACACTCTGAGGCATTGAAGCACGGAAGTTTATCC
TTTAATGGATTTGCaagaatttggtttgtgggCAAGACAAGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067525-exon-scaffold_47-1491911889:161730..162825 | TCONS_00067525-exon-scaffold_47-1491911889:161730..162825 | Clytia hemisphaerica | exon |
| TCONS_00067525-exon-scaffold_47-1510915933:161730..162825 | TCONS_00067525-exon-scaffold_47-1510915933:161730..162825 | Clytia hemisphaerica | exon |
| TCONS_00067525-exon-scaffold_47-1575043694:161730..162825 | TCONS_00067525-exon-scaffold_47-1575043694:161730..162825 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:161730..162825 . |
Blast
The following BLAST results are available for this feature:
|
