TCONS_00067494 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067494
Unique Name	TCONS_00067494
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1934

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_47:320587..325679-

transcript sequence

>TCONS_00067494 ID=TCONS_00067494|Name=TCONS_00067494|organism=Clytia hemisphaerica|type=transcript|length=1934bp
CATTCAGATAATCTAAACAAAAATGAAGCTGATTCTGGTAGGACTTCTTT
TTATTTCGGTTGTTACAGCAATTAGAAGGGCACCGCTGTTTCCAAAGTTC
AAAGGCAGTAAAGTGGAAAATGATTATCAATACAAGGAAATGTGGTATGC
TCAAACTCTTGATCATTTCAACTTTCTGACAACTGATCGACAATTTTCTC
AAAGGTATTTGGTCAGTGATACATATTATAAACCAGGAGGACCAGTGTTC
TTTTACACCGGAAACGAAGGAGATATTGCTTGGTTCTGCAACAATACGGG
TTTTATGTGGGACATCGCTCCAGAGTTCAATGCACTTCTTGTATTTGCTG
AGCATAGATATTATGGTAAATCATTGCCATTTGGAAAAGACTCTTACAAG
GATGCCGTTCACTTGGGATATCTGAGCTCTGAGCAAGCTCTTGCTGATTT
TGCGACACTTATTACACACATCAGAAAAACGATGCCATCTGTTGCAAACA
GTCCTTTCATTTCTTTTGGAGGCTCCTACGGAGGAATGCTTGCTGCTTGG
TTCCGAATGAAATATCCTGCTTCAGTAGCTGGAGCAATTTCAGCGTCTGC
ACCCATCTTAGCATTTCCTGAAATGAATGATTGTGAGCTCTTCTACAAGA
TTGCAACAGAtgatttcaaattagctggagGAGATGTCTGTGCAGCTCAA
ATACGTAAATCATGGAACACTATCGTCTCTTTGGGTCAAACAGCTATTGG
TAGAAGTCAACTGCAATCAATGTTCCAGTTGTGCAAACCATTGAAAGATA
TAAATGATGTGTACATGTTGAATATTTGGTTGAGCGAAGCATGGGTCAAC
CTGGCCATGGTTGATTACCCGTACCCTGCATCATTCTTGGAACCATTACC
AAGCTGGCCCATCAAGGAAGTTTGTAAACACTTGCAAGAAGACGCGACTG
GTGTGACATTGATCAAAAACATTGTTGGTGCAGCAAACGTTTATGCCAAC
TTCACTGGTCAAACTAAATGTCTGGATATCAATCAGCAAGCTACTGGAAA
CCTCGGTGACCAGGGATGGGACTTCCAAGCCTGTACAGAGATGGCAATGC
CATTATGTCAAGACGGAATCCGTGATATGTGGTTACCAGCAGAGTGGAAC
TTCGACGCGTTTGCAAAGGGTTGTGAAACACAGTGGGGAGTAACAACACG
AAAGTATTGGACACAGTCTGTTTATGGCGGATTCAACATTTCTGCTTCAA
GCAATATCGTATTCAGCAATGGTAAATTGGACCCTTGGTCAGGATACGGT
GTTTTGAAATCTCCATCACCCTCCATCGTCACCGTTTTCATTGAAGATGG
AGCGCATCATTTGGATTTGAGATCTGCTAATGACCTCGACCCTCAATCTG
TTATCGATGCCAGGAATATCCATAAACAAAATATCGAGAAATGGATCCAC
GAATATCAAAAACAACATTAAAGATTATTGCTATGTTTTTGTTATAATGG
GAAAAGGTAACAGGAAAGGCAAATGTATATAGGTAGGATTATTTTTGATT
ACATAGGTGCGCACATTTTTGAATCCCTGATGTCTCATAAGCCTACTAGG
TTTTATTTGCCAGCTTGAATATCTAGATTAGCTAAGTGTTTTCTTTAATA
GGGATATGAAACCTTTTACTTTTAACGGATTGGAAATTGAATCTGCTCAT
TAAAATCTAGGATTTTTTCCGACTGCCGAGTCTAGTTTAGCTtattccaa
ctgaattttaaagtATTTTCTATCACTGGTGAAGATCTTTAGGCTCTGGC
TAGGGGAGAAAAATGGGTCATACAGGGGTCTACTTTTAATTCACTGCATA
TGATTTTGTATAGTATGCTTAAACTTCACTGCACTGTGTAATTACGTACa
atttctttggttttatttatttccaatattttgg

Run BLAST on NCBI

transcript from alignment at scaffold_47:320587..325679-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067494 ID=TCONS_00067494|Name=TCONS_00067494|organism=Clytia hemisphaerica|type=transcript|length=5093bp|location=Sequence derived from alignment at scaffold_47:320587..325679- (Clytia hemisphaerica)
CATTCAGATAATCTAAACAAAAATGAAGCTGATTCTGGTAGGACTTCTTT
TTATTTCGGTTGTTACAGCAATTAGAAGGGCACCGCTGTTTCCAAAGTTC
AAAGGCAGTAAAGTGGAAAATGATTATCAATACAAGGAAATGTGGTATGC
TCAAACTGTAAGCTATACTTGATGTGTTTGAGTAAAATTTTGAAAATTAT
TAAGAATTATAAAGAAAATTACTTCTCAGAGAAAAAAGTGGTAGTAGATT
TTTTTATAGCCCTACTATAATCTTGTTTATTGTTTTAATTCCAGCTTGAT
CATTTCAACTTTCTGACAACTGATCGACAATTTTCTCAAAGGTATTTGGT
CAGTGATACATATTATAAACCAGGAGGACCAGTGTTCTTTTACACCGGAA
ACGAAGGAGATATTGCTTGGTTCTGCAACAATACGGTATGGCAATAAAGC
ACTCTATCTTTCTGCGAATTATTAGAAAATATTTATCAAATAGCCCTTGT
CATTAATCCCTTACTAAAACGTTCTATATCTATTTTTTTGAATGGTTAAC
GATCTTAAATGATAAAAGTCACACTACTTTGATTCAAACTATCAAAAAAG
CTGTTGCTCGACATTTTTGTTATCTTGTCTTGCAGGGTTTTATGTGGGAC
ATCGCTCCAGAGTTCAATGCACTTCTTGTATTTGCTGAGCATAGATATTA
TGGTAAATCATTGCCATTTGGAAAAGACTCTTACAAGGTAGATTTGAAGT
ATATACCAAACTATTATCAGGTTCAAATGAAAAATATCTCATATCCAACC
ACACGAAATCTCATGCATTTTAAACATTTTACTTAACCTTGACTTAATTA
TCTCATACACTTAAGAGAAACTATGGCTTAATATATCATTCCTTATTTGA
TTAAAGGATGCCGTTCACTTGGGATATCTGAGCTCTGAGCAAGCTCTTGC
TGATTTTGCGACACTTATTACACACATCAGAGTAAGCATACACTTTCAAG
GCTTTTTTACCTTTTTCTCGGATTTGCTTTCAAAGCTTGACTAAAAGAAA
ATCGTATCCCATTACCAAATTGTAAATTTATTCTGAATATGACAAAATGC
AACCTTCCAAAATTGAGTTTTTGAGATCAATAAAACCTTTCAATTTTGAT
TCTTTTTCAGAAAACGATGCCATCTGTTGCAAACAGTCCTTTCATTTCTT
TTGGAGGCTCCTACGGAGGTGAAAACTTTTTACATTTCGATTATGTCATA
AGTCAGAATTCTCTTTTTGAACCTACATGATAATCGTCTAATTGTCTAAT
TTTCAATGTTAATCTTTTACCTTACATACTTGATGATTTTCACTTTAGGA
ATGCTTGCTGCTTGGTTCCGAATGAAATATCCTGCTTCAGTAGCTGGGTA
AGTATTTTCTGTAATGTATTCTGTAACAATTCTTTAATGGACTTTTCACA
AGCATCATCTTTTTACTTTTTCACTGAATATTGCCGAAGATGGAATGAAT
GAAATCATCAGAGCAATTTAACTAGTTGAAATTCAATGATTTTATCTTGT
TCTCACTTTTAGAGCAATTTCAGCGTCTGCACCCATCTTAGCATTTCCTG
AAATGAATGATTGTGAGGTGGGTGTTAATTTTTTTAAATAAGGCTCTAAC
TTTTTAACTCTATTTATTTCTAAAAAAGGAAAATGAGAAACATTGGCCAG
CGTAATGTCGATGGCATTATTCCCATTCTTTATAAAAAATAGTGCATTGC
AGTTATTTTGAAAATCTCTTTTCAATTAAGATGTCTGACTATTATGTTAT
ACTGGGAAACTGGATATCCAAGTTGTGAACGTTTATTTTGTTGATGAAGA
CGCATTGATTTAGGAAGACCAGGCAGTAAACCATGTCGACAAAAAAAGTT
TACAGTCTGGATTTCTAGCATTCACTTTTGTTATATGTAGCTCTTCTACA
AGATTGCAACAGATGATTTCAAATTAGCTGGAGGAGATGTCTGTGCAGCT
CAAATACGTAAATCATGGAACACTATCGTCTCTTTGGGTCAAACAGGTAT
ATCGATTCGAACAAAAGAGGTTTTTAACGTTGTCAGCCAAACCTACTATA
GGTGCCTTAACTTTTAGATTTCAAGTCCTACAGGTCGAGTTGCTAGCACT
TTTCCATAACGAGAAAAAAATTTCTTTCTACTGAGCATAAAAAATGTGGA
ATATTCAACTATTGTCAAGATGCTTAACTTGTAATTTCTTAATACTTATA
AGTTGTAACACACTTCCTGTTTTTCCCCTAGCTATTGGTAGAAGTCAACT
GCAATCAATGTTCCAGTTGTGCAAACCATTGAAAGATATAAATGATGTGT
ACATGTTGAATATTTGGTTGAGCGAAGCATGGGTCAACCTGGCCATGGGT
AAATATCAGAACATGTATATCATACAGCTCCTCATTTTTGACGATAATTT
ATGTCAGTTTTGAAATGCTTTGCAACTGTTAACTTTGTAACCTTGTCAAC
CGTTACATTTTAGTTGATTACCCGTACCCTGCATCATTCTTGGAACCATT
ACCAAGCTGGCCCATCAAGGTTTGTGATTTAACTGTCTTACAGTATTATA
TTAGGTTTGCACCATTTCTCTTTCATATGATAACTTTTTGTCAACCCATA
CCATGTGAAGGGTACCATAACTGTGATACAAGAGTGTGAGTGATATACCG
AACTGTGCGGTGTTGGGTGACACTCATCCCGTCCTACGCTCGTGACAAGC
ACTATGCTCTCCTGCGTAGTTCGAGTGTCATCACTATGCACCATGTTAAC
GATGTGACTACCTTTTTAAAAATACTTCATTTATTCCAGAAAATAATTTG
AGTTCATTGTTTTTGATGCTGAACTGAAATTTTTATTTTGTTACTTATGA
CAACCTTTTCTCGCAGACCCACCGGGAAGGGTCCCACTGGAAAAAATTTG
CCAAAATATAAAGAAATATTGTGCTATTTTTTCCATTCCCACTGAATTTT
CTGACGCGAAAACAATTGAATTAAAATCCCCAGCCATAAAAAAATATGGA
GTGACAATCCCCATCGAGTTTTCGTCCGGTATTTTTGCCCCTAATGACTG
AAAAAATCCTACCGGGTCTGTAAGAAGGGGGGCGGGGTGTGAATTTGAAT
TTTACGCGTCTGGAAAATCTACTTTACTGATGCGAAAAACCTGTTACGTG
ATTTTTGCATGATTATGAAATAATTCTTAAATGCCAATATTGTAACCCTT
TTCAGGAAGTTTGTAAACACTTGCAAGAAGACGCGACTGGTGTGACATTG
ATCAAAAACATTGTTGGTGCAGCAAACGTTTATGCCAACTTCACTGGTCA
AACTAAATGTCTGGATATCAATCAGCAAGCTACTGGAAACCTCGGTGACC
AGGGATGGGACTTCCAAGTATGTTTTCTGGACTTTATTTTAATGTTTCTC
TTTCAGTACATTGATATTACTCCAATGACAGAAGGTTTTCAGGCACACAA
AGCTTAATAATCAGCGCTGTCAAGTTGGAATACCCATGATGCTCTTTATC
AAGCAATTCACGTTTTTAATGTGAACTTTGTGTTCAAACTGCTCTTAACG
TTTCTCTCCTTATGTTTCAAAATTGAGCAAAATTGAGAAAACTCGTCTTC
ACATGTGTATCGCAACTACCCTTTTATAGGCCTGTACAGAGATGGCAATG
CCATTATGTCAAGACGGAATCCGTGATATGTGGTTACCAGCAGAGGTTTG
TCACTAATTTTTTATTTTGTTGTCATGCAACCTTGACTCTTAAGGACCTG
GTTGACAAGGGGCAGCGGTTAGATATAGCGAAAAATGGAAATCCTCATTG
TTTGGGGTTAGAATTACTCCCTTTTATACACATTAGCTAAATTTAACTGA
ATCTAATACACCTAACATGAGGTTTTTTTGTTCTTGGATTGTACAAAGTT
TTTCCATAGTAATTTTTCGGAGAAAAGGACTGATTTGAAATTTTGAAAAG
TGACAATTCTTCCCCGAGGTGATGGTTGTGATCGTATTTCTTTTTCAGTG
GAACTTCGACGCGTTTGCAAAGGGTTGTGAAACACAGTGGGGAGTAACAA
CACGAAAGTATTGGACACAGTCTGTTTATGGCGGATTCAACATTTCTGCT
TCAAGCAATATCGTATTCAGGTAACATCTTATTTACTCTTTATTGCTTAA
GCAAAAAGAATAAAATCAGGGTCCAGCTAAGAAAACCACCTCACCCAGAC
CCACCAGATCGTCCATAAAATATCGCTTTTGAAAATTTTGTTTACAAGGG
GGCACTCAAGAAGTAGAGGGCAAGTCTGAATATAGCACAACGAGGGTTAA
TATAGTTTGTGTCTAGCAGGCTCTGTCCCGTACAACTGTCTACTTTCAAC
CGTTCATTTTTCTTCTCTTCTTTAGCAATGGTAAATTGGACCCTTGGTCA
GGATACGGTGTTTTGAAATCTCCATCACCCTCCATCGTCACCGTTTTCAT
TGAAGATGGAGCGCATCATTTGGATTTGAGATCTGCTAATGACCTCGACC
CTCAATCTGTTATCGATGCCAGGAATATCCATAAACAAAATATCGAGAAA
TGGATCCACGAATATCAAAAACAACATTAAAGATTATTGCTATGTTTTTG
TTATAATGGGAAAAGGTAACAGGAAAGGCAAATGTATATAGGTAGGATTA
TTTTTGATTACATAGGTGCGCACATTTTTGAATCCCTGATGTCTCATAAG
CCTACTAGGTTTTATTTGCCAGCTTGAATATCTAGATTAGCTAAGTGTTT
TCTTTAATAGGGATATGAAACCTTTTACTTTTAACGGATTGGAAATTGAA
TCTGCTCATTAAAATCTAGGATTTTTTCCGACTGCCGAGTCTAGTTTAGC
TTATTCCAACTGAATTTTAAAGTATTTTCTATCACTGGTGAAGATCTTTA
GGCTCTGGCTAGGGGAGAAAAATGGGTCATACAGGGGTCTACTTTTAATT
CACTGCATATGATTTTGTATAGTATGCTTAAACTTCACTGCACTGTGTAA
TTACGTACAATTTCTTTGGTTTTATTTATTTCCAATATTTTGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042149	XLOC_042149	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:320587..325679 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
85.4204	98.0331	105.745	102.905	26.6472	10.3699	1.14756e-06	1.74508	10.1389	18.8561	0.588015	7.26692	11.3013	4.50898	28.6866	24.4833	25.5098	27.4213	46.4012	58.0457	21.7199	23.1212	34.4203	33.6036	0.516655	0.00160348	20.4202	27.5015	36.5934	32.94

Blast

[Close]

BLAST of TCONS_00067494 vs. Swiss-Prot (Human)
Match: PCP (Lysosomal Pro-X carboxypeptidase OS=Homo sapiens GN=PRCP PE=1 SV=1)

HSP 1 Score: 506.523 bits (1303), Expect = 5.432e-173
Identity = 241/453 (53.20%), Postives = 317/453 (69.98%), Query Frame = 2

Query:  128 QYKEMWYAQTLDHFNFLTTDRQFSQRYLVSDTYYKP-GGPVFFYTGNEGDIAWFCNNTGFMWDIAPEFNALLVFAEHRYYGKSLPFGKDSYKDAVHLGYLSSEQALADFATLITHIRKTMPSVANSPFISFGGSYGGMLAAWFRMKYPASVAGAISASAPILAFPEMNDCELFYKIATDDFKLAGGDVCAAQIRKSWNTIVSLGQTAIGRSQLQSMFQLCKPLKDINDVYMLNIWLSEAWVNLAMVDYPYPASFLEPLPSWPIKEVCKHLQE-DATGVTLIKNIVGAANVYANFTGQTKCLDINQQATGNLGDQGWDFQACTEMAMPLCQDGIRDMWLPAEWNFDAFAKGCETQWGVTTRKYWTQSVYGGFNISASSNIVFSNGKLDPWSGYGVLKSPSPSIVTVFIEDGAHHLDLRSANDLDPQSVIDARNIHKQNIEKWIHEY----QKQH 1468
             Y  +++ Q +DHF F  T + F+QRYLV+D Y+K  GG + FYTGNEGDI WFCNNTGFMWD+A E  A+LVFAEHRYYG+SLPFG +S+KD+ HL +L+SEQALADFA LI H+++T+P   N P I+ GGSYGGMLAAWFRMKYP  V GA++ASAPI  F ++  C +F KI T DF+ +G   C+  I +SW+ I  L  T  G   L     LC PL    D+  L  W+SE WVNLAMVDYPY ++FL+PLP+WPIK VC++L+  + +   L++NI  A NVY N++GQ KCL+I++ AT +LG  GW +QACTE+ MP C +G+ DM+ P  WN    +  C  QWGV  R  W  ++YGG NIS+ +NIVFSNG+LDPWSG GV K  + ++V V I +GAHHLDLR+ N LDP SV+ AR++  ++++ WI ++     KQH
Sbjct:   47 NYSVLYFQQKVDHFGF-NTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRKSGPH-CSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTS-QDIQHLKDWISETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPSWITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLARSLEVRHMKNWIRDFYDSAGKQH 496

The following BLAST results are available for this feature:

BLAST of TCONS_00067494 vs. Swiss-Prot (Human)

BLAST of TCONS_00067494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PCP	5.432e-173	53.20	Lysosomal Pro-X carboxypeptidase OS=Homo sapiens G...	[more]

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TCONS_00067494 (transcript) - C. hemisphaerica