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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067490 ID=TCONS_00067490|Name=TCONS_00067490|organism=Clytia hemisphaerica|type=transcript|length=5132bpRun BLAST on NCBI protein sequence of TCONS_00067490-protein >TCONS_00067490-protein ID=TCONS_00067490-protein|Name=TCONS_00067490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1219bp MTSTLNLLSMPGISINKISRNGSTNIKNNIKDYCYVFVIMGKACCWSSPVRun BLAST on NCBI transcript from alignment at scaffold_47:313829..325677- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067490 ID=TCONS_00067490|Name=TCONS_00067490|organism=Clytia hemisphaerica|type=transcript|length=11849bp|location=Sequence derived from alignment at scaffold_47:313829..325677- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:313829..325677- >TCONS_00067490 ID=TCONS_00067490|Name=TCONS_00067490|organism=Clytia hemisphaerica|type=CDS|length=10980bp|location=Sequence derived from alignment at scaffold_47:313829..325677- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067490 vs. Swiss-Prot (Human)
Match: PCP (Lysosomal Pro-X carboxypeptidase OS=Homo sapiens GN=PRCP PE=1 SV=1) HSP 1 Score: 506.523 bits (1303), Expect = 3.295e-162 Identity = 241/453 (53.20%), Postives = 317/453 (69.98%), Query Frame = 3
Query: 126 QYKEMWYAQTLDHFNFLTTDRQFSQRYLVSDTYYKP-GGPVFFYTGNEGDIAWFCNNTGFMWDIAPEFNALLVFAEHRYYGKSLPFGKDSYKDAVHLGYLSSEQALADFATLITHIRKTMPSVANSPFISFGGSYGGMLAAWFRMKYPASVAGAISASAPILAFPEMNDCELFYKIATDDFKLAGGDVCAAQIRKSWNTIVSLGQTAIGRSQLQSMFQLCKPLKDINDVYMLNIWLSEAWVNLAMVDYPYPASFLEPLPSWPIKEVCKHLQE-DATGVTLIKNIVGAANVYANFTGQTKCLDINQQATGNLGDQGWDFQACTEMAMPLCQDGIRDMWLPAEWNFDAFAKGCETQWGVTTRKYWTQSVYGGFNISASSNIVFSNGKLDPWSGYGVLKSPSPSIVTVFIEDGAHHLDLRSANDLDPQSVIDARNIHKQNIEKWIHEY----QKQH 1466
Y +++ Q +DHF F T + F+QRYLV+D Y+K GG + FYTGNEGDI WFCNNTGFMWD+A E A+LVFAEHRYYG+SLPFG +S+KD+ HL +L+SEQALADFA LI H+++T+P N P I+ GGSYGGMLAAWFRMKYP V GA++ASAPI F ++ C +F KI T DF+ +G C+ I +SW+ I L T G L LC PL D+ L W+SE WVNLAMVDYPY ++FL+PLP+WPIK VC++L+ + + L++NI A NVY N++GQ KCL+I++ AT +LG GW +QACTE+ MP C +G+ DM+ P WN + C QWGV R W ++YGG NIS+ +NIVFSNG+LDPWSG GV K + ++V V I +GAHHLDLR+ N LDP SV+ AR++ ++++ WI ++ KQH
Sbjct: 47 NYSVLYFQQKVDHFGF-NTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRKSGPH-CSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTS-QDIQHLKDWISETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPSWITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLARSLEVRHMKNWIRDFYDSAGKQH 496 The following BLAST results are available for this feature:
BLAST of TCONS_00067490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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