TCONS_00067485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067485
Unique NameTCONS_00067485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067485 ID=TCONS_00067485|Name=TCONS_00067485|organism=Clytia hemisphaerica|type=transcript|length=1726bp
CTGGAATGTGGAATGACATCAGCTGTCATAACTTGTTTTATTACGTATGC
AAACTTCGCTCATCAGATTTTACATTGCAATTCCTCACAAAGCCATCATT
AAGAAGAAGTGAGAGCAGAAAAGAAACAATTGTTTCTGGCTGCAGTTATT
CTTCGTCAACTCACTCCAGTTGGATGGCAAAATCttttattcaaagaaat
aaTGATGACTTGATTGCGATTTCTACTGCAGTGCAAGTTACTAATGAAAC
AAGTCGTGACAATGTTTTCACTCTACCTTCTGTTAAATTGTCGTATATTG
AACATGGAGATTTCAGATGCGTGATAATCCATGACAGTATAACGTATTAC
TCTTTTGCATCCAAATTGTATAAATCTCCAGATTTTATCGATGTTCCAAC
ATTTGCGAGAGAATCACAACATTTGCTGTCTGGATGTAATTTCTTGTATC
ACGAGGCACCACAAACTGACAACGTTTTCTTCAATCTCTACAACGATGCA
AAACAATTGACAAACAGAAGACGCACAACCTTCAAAAACTCCACAATTCC
AAACCAGTATCATTTCAACCNATGCAAAACAATTGACAAACAGAAGACGC
ACAACCATCAAAAACTCCACAATTCCAAACCAGTATCATTTCAACCAAGT
TACAGTTACCAATTATACAGATGTGGGAAATTACATTCGATGTCAAATTG
ATATCGAAACAAACACTACCATGTCCAATTTCTCAGATATCATCAATGTT
CATTACCCATCAGTTATAGACCACCCTACATCAAATTCCACCATCTATTT
TGTTGGTGATCCAATTCAAATTGGTGGTTGCGCATTTAAGTCCACGTTTC
GTCAAGGTGTCCAAGGTTACTGGTTAAAAAATGGTGCCGTGTACAATGAG
AACGTAAACTTGGTGTACGAGTTAGCAACAGATGGGCTGATAGTGTTGAA
ACTACCTGCCCTTATCATTGACGAGGCAATTGAGAGTGCTAATTATTCTT
GCCAACTTGATGCTATAGTTAATGGTGATGGTGATATTAGAATCACTCGT
TCAAACCCTGTTCAGGCACTTGTGTATGATCCGTATGCTACTTTCAATGG
AGTTCGATACTACTTTAGTATAACAAAAAAAGACTGGCAATCTGCAGAAA
ATGATTGTGTAGATCTTGGAGGACATTTAACAAGTGTTCACTCGCAAGCT
GAAAATGATTTCCTTCATCAGCAACTTCTGAACAGAACAGGGAGTGGAGA
TGCTTGGTATGGTGGTCTTAGaagtgaaaatgttttttttctttggtcAG
ATGGCTCAGGATTTCTCACAACATTTTGGAATCCTGGAGAGCCCAATGAC
AGTGGAGGGGCTGAGGATTGTTTACAAGGTTGGGCTGCTAATGATCATTG
GAACGATGCATGGTGTGgaaagaaatttcattttgtgTGCAAAATTTATT
CAGattttacaCTGCAATTCCTCACAAAGCCATCATTAAGAAGAAGTGAG
AGCAGAAAAGAAACAATTGTTTCTGGCTGCAGTTATTCTTCGTCAACTCA
CTCAAGTTGGACACCAAAATCTTTTATTCAAAGAAACAATGATGACTTGA
TTGCGATTTCTACTGCAGTACAAGTTACTAATGAAACAAGTTATGACAAT
GTTTTCTCTCTACCCTCTGTTAAATTGCCGTATATTGAAAATGGAGATTT
CAGATGCGTGATTATTGTTGCGGACA
Run BLAST on NCBI

transcript from alignment at scaffold_47:290768..295313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067485 ID=TCONS_00067485|Name=TCONS_00067485|organism=Clytia hemisphaerica|type=transcript|length=4546bp|location=Sequence derived from alignment at scaffold_47:290768..295313- (Clytia hemisphaerica)
CTGGAATGTGGAATGACATCAGCTGTCATAACTTGTTTTATTACGTATGC
AAACTTCGCTCATCAGGTAAAAGAAATTATTGGGTGGGGGGGGTTCGGTA
ATTCTTCCATCAGCTCACTATAGCTAACTGTAATCTGATTACTCATCTGT
TAAAGATATTCTATTATTCGAGCAATNGGGGGGGGGGGGGGGTTGATAAC
TCTTCCATCAGCTGACTATAGCTAACAGTAGTTTGATCGCTCATCTGTTA
AAGATATTCTATCATTCGAGCAATACTTTCTTTAGTGAGTTAATTTGCGT
CCACAGTACAACCTTATTACATACTATTAACCCAAAACTAGGGGAGGTAC
CCGCCCTTTCTCCCTAAATTACTCCGTTTAATTTTTCCTGATAGTTATTG
TGTAGAGACATCAAATAAAAGTTTAGGTTCTTAGAAACATCCTTGGACAA
TTTAGATGAATCAAATTCAAATTAATCACCTTTACGCTACCTCCAAGTCT
GGGCCGTGATAACATTTCCACTTGGAAACATTTTCGATCTTCTTTTAAAA
ACCCACAATTTATGTTATTTAATTTGTATTTTTGAAATTCTTATATAGAT
TTTACATTGCAATTCCTCACAAAGCCATCATTAAGAAGAAGTGAGAGCAG
AAAAGAAACAATTGTTTCTGGCTGCAGTTATTCTTCGTCAACTCACTCCA
GTTGGATGGCAAAATCTTTTATTCAAAGAAATAATGATGACTTGATTGCG
ATTTCTACTGCAGTGCAAGTTACTAATGAAACAAGTCGTGACAATGTTTT
CACTCTACCTTCTGTTAAATTGTCGTATATTGAACATGGAGATTTCAGAT
GCGTGATAATCCATGACAGTATAACGTATTACTCTTTTGCATCCAAATTG
TATAAATCTCCAGGTATATATTTCTTTTTCAGCTAATAATCACACAAATG
TTATTACTTTAGTAGTAGTAAGTCTGCGGCCCGAAGGCTTGTCTTTCAAT
AGCTATCTACCCGAAGGTAGGAGAGGGCGCCATTCTCTCCCTGGATTGCT
CCACTTACCCTTAATCCTTCTCTTAATTGCTAAGCATCAAGCAGAGAGAC
ATCAAGTACCATTTCGGGAATCTTTGGTATGACCCGGCTGGAAATTTACC
TCCACAACCTTGCGAAAACTAGCCGGATGCTCTACCACTGCACTACGATT
GCTTTACCCTACGGTAGTTACTTTAAGGCGCCTGATAAGTGCATTCCTGT
TGTCAGTTTTTTTCATTTTGCTTCCAGCTCTCGTTCATTGCACCCTCTGT
TTATGAAGACACATTAGAGTAATTGTTTCAAATGAAAATTGTCAGAAATT
AACCACCTTTCAAGTTTACCGTGAGTGGAAATTCATGTAACTAATCAAAT
TATTGTTCAACGTTTCAGATTTTATCGATGTTCCAACATTTGCGAGAGAA
TCACAACATTTGCTGTCTGGATGTAATTTCTTGTATCACGAGGCACCACA
AACTGACAACGTTTTCTTCAATCTCTACAACGATGCAAAACAATTGACAA
ACAGAAGACGCACAACCTTCAAAAACTCCACAATTCCAAACCAGTATCAT
TTCAACCNATGCAAAACAATTGACAAACAGAAGACGCACAACCATCAAAA
ACTCCACAATTCCAAACCAGTATCATTTCAACCAAGTTACAGTTACCAAT
TATACAGATGTGGGAAATTACATTCGATGTCAAATTGATATCGAAACAAA
CACTACCATGTCCAATTTCTCAGATATCATCAATGTTCATTGTAAGTTTT
CGGTAACATCTAAGTCAGAATATTATAATCTTACACTGTTATCTGGATTC
CATGTATTTTTAGATAAACATCCAGTATAATAATTTAATGTTTTTTTTCG
ACAAATGACCAGATCCTCCTTGGATAATTTTGTATTCTGCAGACCTTGAT
TTATATTTGCTATTGTTATGTTTTTAGACCCATCAGTTATAGACCACCCT
ACATCAAATTCCACCATCTATTTTGTTGGTGATCCAATTCAAATTGGTGG
TTGCGCATTTAAGTCCACGTTTCGTCAAGGTGTCCAAGGTTACTGGTTAA
AAAATGGTGCCGTGTACAATGAGAACGTAAACTTGGTGTACGAGTTAGCA
ACAGATGGGCTGATAGTGTTGAAACTACCTGCCCTTATCATTGACGAGGC
AATTGAGAGTGCTAATTATTCTTGCCAACTTGATGCTATAGTTAATGGTG
ATGGTGATATTAGAATCACTCGTTCAAACCCTGTTCAGGCACTTGTGTAT
GGTAAGTTCATCTTTGATTTATAGTTGATTGTCCTCAAGTCTCTGTAACC
TTATAAACTGCTCGAAGTACCAAAGTTCTGTACTGTTGCAATGTTTTTCG
TTGTATGATCTTTAAAACTCTAAAATTAGTTCACATCGATACTTTGTCAT
AGATCCGTATGCTACTTTCAATGGAGTTCGATACTACTTTAGTATAACAA
AAAAAGACTGGCAATCTGCAGAAAATGATTGTGTAGATCTTGGAGGACAT
TTAACAAGTGTTCACTCGCAAGCTGAAAATGATTTCCTTCATCAGCAACT
TCTGAACAGGTTCGTAAGGTACCTAATTTAAGTTGGTTTGCTGGTCTGTT
AATAAGGGGGACATGACACATCTTTTTCACTGGATATTGACACTTGGTTT
ATTAAATTGGGTTATCCCAAAAAATAAAATATAAAAATTGAACCCCCTCC
CTCATATCGAGGAAAATCCAGGGTTCCCTGAAATTTTCGGAAACTCCATT
GAGTTTTTAAAATAACTTAATTTATTCATCGTCATTACAAGAAGACGATA
AATCAAGGGACATTTAAAAATTTGTTATAAGACTTGTCCCAAAGGTGATC
ACCTCGACAAGGGGCAATCAATTTCTATTATGGCCCATCTTTTTATTAAA
CTGTACTTAATTTATTAATTTTGAATCAAATTTCACAATTATTCTCTTAA
TATACAGAACAGGGAGTGGAGATGCTTGGTATGGTGGTCTTAGAAGTGAA
AATGTTTTTTTTCTTTGGTCAGATGGCTCAGGATTTCTCACAACATTTTG
GAATCCTGGAGAGCCCAATGACAGTGGAGGGGCTGAGGATTGTTTACAAG
GTTGGGCTGCTAATGATCATTGGAACGATGCATGGTGTGGAAAGAAATTT
CATTTTGTGTGCAAAATTTATTCAGGTTAGTTATCAGTTTACTAAGTTTT
CCATTTTTCGTTTATTTGTGACAGAGAAATTGACCCTTCCCTTCTCCGAA
AGATTTCCCTTGGAAAACTTTATTAGTCAAATTTGATCGACATTCACTAT
TCGTATTACAAATGCTTGAAAAATAACTCTTGAAAAACTTCTGCTTGAAA
ATCAAAGCGAAGATCAACCCTAAAAAAGTACGGTAGTTGTCTTTGCCTTG
GAGGGAGCACGAGCAAAGCTCTGTTTCGTTACAATAGATTTGGTACAATA
GATTTCTTATTTTTACGCCTAAAATGGTCAATCAAGGAACGATTTCGGGG
GTTTCGGGGCTGAAGGGAAAATATCGGGGGGTATATTCTCCACACAGTTC
GAATAAACTTAAAGTTACGGTTAGAGTTTCTCTGGGACATTTTTCCAAAG
GCGAAGTGCCAGGGGGTAGATTTCAAACTTCAATTCTAGTTTCACCTGGT
TTCACTAGTTTTGATACCAATTAATGTTTTAATATTTTAATGTGAAAATG
ATTTATGTATCAAATATTATTGTCAAATACATAATAATTTTATAATATTC
CGGTTTGAAGGATGCGATGAATAGCAGCAGCCTTTGTGTTCTTCTCCTAT
CTAGCTTTTCTTTATTATTTTTCTAAATATTCTTAACTTCAGTTGAGCTA
GAATCTGTGAATGTCTGTGTGTGTGTCTGTCCAGGTCTGTATGTGTGTAT
GTTCCAAAACTTTGGGGCAACCTGAAGACTTCAAAAATTGTTCGATTTGG
CTGAAATTTTGCACACCTGTTTTTTGGGTGAATATTTGTTTTTTTTTTTC
ATTTTTTGAAAACTTTGATTTTCAAGGCCTGGACTCTAATCTTTTGGTTT
GTTTTGCTACAATCGGGCCTATGAATAATTTGAAGCATCTGAAGTTGAGT
CCAGTGCGTTGCGCACGTTCGACTATTTAATTATCATCTTGAACCTCTAA
AAGTTAAACGACTCTTATTTCTGAATTGTGAAAACTTTGAAAGTTATTTT
AACTGAACTCTCTTTTATTTTAGATTTTACACTGCAATTCCTCACAAAGC
CATCATTAAGAAGAAGTGAGAGCAGAAAAGAAACAATTGTTTCTGGCTGC
AGTTATTCTTCGTCAACTCACTCAAGTTGGACACCAAAATCTTTTATTCA
AAGAAACAATGATGACTTGATTGCGATTTCTACTGCAGTACAAGTTACTA
ATGAAACAAGTTATGACAATGTTTTCTCTCTACCCTCTGTTAAATTGCCG
TATATTGAAAATGGAGATTTCAGATGCGTGATTATTGTTGCGGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042146XLOC_042146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067485-exon-scaffold_47-1575043694:295248..295313TCONS_00067485-exon-scaffold_47-1575043694:295248..295313Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1575043694:294401..294715TCONS_00067485-exon-scaffold_47-1575043694:294401..294715Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1575043694:293523..293895TCONS_00067485-exon-scaffold_47-1575043694:293523..293895Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1575043694:293013..293336TCONS_00067485-exon-scaffold_47-1575043694:293013..293336Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1575043694:292705..292861TCONS_00067485-exon-scaffold_47-1575043694:292705..292861Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1575043694:292089..292306TCONS_00067485-exon-scaffold_47-1575043694:292089..292306Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1575043694:290768..291040TCONS_00067485-exon-scaffold_47-1575043694:290768..291040Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1510915933:295248..295313TCONS_00067485-exon-scaffold_47-1510915933:295248..295313Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1510915933:294401..294715TCONS_00067485-exon-scaffold_47-1510915933:294401..294715Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1510915933:293523..293895TCONS_00067485-exon-scaffold_47-1510915933:293523..293895Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1510915933:293013..293336TCONS_00067485-exon-scaffold_47-1510915933:293013..293336Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1510915933:292705..292861TCONS_00067485-exon-scaffold_47-1510915933:292705..292861Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1510915933:292089..292306TCONS_00067485-exon-scaffold_47-1510915933:292089..292306Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1510915933:290768..291040TCONS_00067485-exon-scaffold_47-1510915933:290768..291040Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1491911889:295248..295313TCONS_00067485-exon-scaffold_47-1491911889:295248..295313Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1491911889:294401..294715TCONS_00067485-exon-scaffold_47-1491911889:294401..294715Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1491911889:293523..293895TCONS_00067485-exon-scaffold_47-1491911889:293523..293895Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1491911889:293013..293336TCONS_00067485-exon-scaffold_47-1491911889:293013..293336Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1491911889:292705..292861TCONS_00067485-exon-scaffold_47-1491911889:292705..292861Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1491911889:292089..292306TCONS_00067485-exon-scaffold_47-1491911889:292089..292306Clytia hemisphaericaexon
TCONS_00067485-exon-scaffold_47-1491911889:290768..291040TCONS_00067485-exon-scaffold_47-1491911889:290768..291040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:290768..295313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0233868	0	0	0	0	0.0498441	0.0300674	0	0	0	0	0	0	0	0.0265596	0	0	0.0179947	0	0.0260149	0.156491	0.0898557	0	0	0.592515	0.418335	0	0.336456	0	0
Blast
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BLAST of TCONS_00067485 vs. Swiss-Prot (Human)
Match: CLC4K (C-type lectin domain family 4 member K OS=Homo sapiens GN=CD207 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.244e-18
Identity = 53/141 (37.59%), Postives = 72/141 (51.06%), Query Frame = 1 
Query: 1042 ITRSNPVQALVYDPYATFNGVRYYFSITKKDWQSAENDCVDLGGHLTSVHSQAENDFLHQQLLNRTGSGDAWYGGLRSENVF--FLWSDGSGF----LTTFWNPGEPNDSGGAEDCLQGWAAN-DHWNDAWCGKKFHFVCK 1443
            + R N +  +V   +  F G  YYFS+  K W SAE  CV    HLTSV S++E +FL+     +T  G  ++ GL    +   + W D + F       FW PGEPN++G  E C    A +   WNDA C K F F+CK
Sbjct:  185 LKRQNDILQVVSQGWKYFKGNFYYFSLIPKTWYSAEQFCVSRNSHLTSVTSESEQEFLY-----KTAGGLIYWIGLTKAGMEGDWSWVDDTPFNKVQSVRFWIPGEPNNAGNNEHCGNIKAPSLQAWNDAPCDKTFLFICK 320
The following BLAST results are available for this feature:
BLAST of TCONS_00067485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLC4K2.244e-1837.59C-type lectin domain family 4 member K OS=Homo sap... [more]
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