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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067468 ID=TCONS_00067468|Name=TCONS_00067468|organism=Clytia hemisphaerica|type=transcript|length=3535bpRun BLAST on NCBI transcript from alignment at scaffold_47:200966..209654- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067468 ID=TCONS_00067468|Name=TCONS_00067468|organism=Clytia hemisphaerica|type=transcript|length=8689bp|location=Sequence derived from alignment at scaffold_47:200966..209654- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067468 vs. Swiss-Prot (Human)
Match: KCNH2 (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1) HSP 1 Score: 380.563 bits (976), Expect = 4.382e-112 Identity = 216/550 (39.27%), Postives = 304/550 (55.27%), Query Frame = 1
Query: 616 QKFLINHEGRFKVMWDWLVLLLVIFTAIQVPFYATF----TRTAPVIFDIGDGGHSEAIVILTTMVDLIFIVDIFLNFRTTYVRSSSELKEQDSKKIAKHYLKTWFLIDLLAAIPFDLMVHDHENNSNSNASTVIGLLKSARLLRLFRVARKLDRYSEHGYAVLFLLMCFFMLISHWLACVWNFIATHEEHIEDS---WVRRLNDDIYPPLKEQIKCCCSRIAQNVLMNKSLINTTSSNFTNIAGAVKQLPPIQLGVGERYIASLYFIVSSLTGVGFGNIAATTVYEQTFSVILMMLGTLLYACIFGNMVAIVQRSYSRQTLYHNNMTSMREFLHFYKIPHDLQNNINNYTRREWLLSPALEAKTMLSNFPECLQADLTYELYQHVFFKNSAFREATLSCMRALSMKMHTMTLQANLCILRRGDEIDKLYIIEKGEIEVQIKNPETGDSQHGNKIK--LGKDKTFGYDVKMMPRKPKSNSNVRTTILSEIHYIDKNDLLEIFDTYPKFAENFRHHYSHGFDLND----------VEEEGYFTTPVRKQKV 2208
++ I H FK +WDWL+LLLVI+TA+ P+ A F T P + G A+V L +VD++FIVDI +NFRTTYV ++ E+ + IA HY K WFLID++AAIPFDL++ S + +IGLLK+ARLLRL RVARKLDRYSE+G AVLFLLMC F LI+HWLAC+W I E+ DS W+ L D I P N + + G P I+ ++Y+ +LYF SSLT VGFGN++ T E+ FS+ +M++G+L+YA IFGN+ AI+QR YS YH M +REF+ F++IP+ L+ + Y + W + ++ +L FPECLQAD+ L + + FR AT C+RAL+MK T ++ GD + LY I +G IE+ G+ + LGK+ FG + + R KSN +VR ++H I ++DLLE+ D YP+F+++F F+L D E EG F+ RK+K+
Sbjct: 396 HRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLKETEEGPPATECGYACQPLAVVDL--IVDIMFIVDILINFRTTYVNANEEVVSHPGR-IAVHYFKGWFLIDMVAAIPFDLLIF------GSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQIGKPY---------------------------NSSGLGG-----PSIK----DKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEI----------LRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMIPGSPGSTELEGGFSR-QRKRKL 889 The following BLAST results are available for this feature:
BLAST of TCONS_00067468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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