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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067466 ID=TCONS_00067466|Name=TCONS_00067466|organism=Clytia hemisphaerica|type=transcript|length=4237bpRun BLAST on NCBI protein sequence of TCONS_00067466-protein >TCONS_00067466-protein ID=TCONS_00067466-protein|Name=TCONS_00067466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1039bp MVLRSCWQSMVVIFIALSISLTHFRKISAYPKPGSIAEPAEPGLPALPALRun BLAST on NCBI transcript from alignment at scaffold_47:130668..137315- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067466 ID=TCONS_00067466|Name=TCONS_00067466|organism=Clytia hemisphaerica|type=transcript|length=6648bp|location=Sequence derived from alignment at scaffold_47:130668..137315- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_47:130668..137315- >TCONS_00067466 ID=TCONS_00067466|Name=TCONS_00067466|organism=Clytia hemisphaerica|type=CDS|length=28080bp|location=Sequence derived from alignment at scaffold_47:130668..137315- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067466 vs. Swiss-Prot (Human)
Match: CAH9 (Carbonic anhydrase 9 OS=Homo sapiens GN=CA9 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 1.269e-32 Identity = 81/262 (30.92%), Postives = 133/262 (50.76%), Query Frame = 3
Query: 2373 GPPNWKHLAPLCGGQMQSPIDMSASNSATLPLQSGIAMEGIE--GMIRGKLSNNGKTIGFXXXXXXXXXXXXXXXXXMLTVQGETYTLKQFHLHFGCGGEPGSEHALDGQKFAGEVHLVFQNTLFPNQGNALKQPNGLAILAFFVKIDPGAPPNAEFRRFAENVMNVQQPGDVLPMPGGFSMTGMVP-HFTEGLRNLRRFVYKGSLPTPPCYESVTWVIFNRPILLNGETVNKFSSVM-GAGQQPLCGNFRPIQPANGREVK 3146
G P W ++P C G+ QSP+D+ +A P + + G + + +L NNG ++ + ++ M G Y Q HLH+G G PGSEH ++G +F E+H+V +T F AL +P GLA+LA F++ P N+ + + + + + G +P G ++ ++P F+ R F Y+GSL TPPC + V W +FN+ ++L+ + ++ S + G G L NFR QP NGR ++
Sbjct: 145 GDPPWPRVSPACAGRFQSPVDIRPQLAAFCPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLE----------MALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEE--NSAYEQLLSRLEEIAEEGSETQVP-GLDISALLPSDFS------RYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDTLWGPGDSRLQLNFRATQPLNGRVIE 387 The following BLAST results are available for this feature:
BLAST of TCONS_00067466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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