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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067458 ID=TCONS_00067458|Name=TCONS_00067458|organism=Clytia hemisphaerica|type=transcript|length=987bp
GCTTGTCAAAGAGAAAagcgaaaaatgaaaacaaaaagagagagagagtt
gTTGTCTAGTTCAAGTTTCTGTTGGAACTGAAAAGCGATTGTGTTACTCA
AGCCACCTTATTCGTAAGCGCGTCAAAATGCGTCTTTTCTTGTACACTGC
AACTTTTTTGGCTGTCACGCACGAAGTATTCGGTGTGTCTGAATGTTACA
ACAATATGGAAGCCACCACCACAGCGAATTGTACAGCGCAAAACAATGGA
ACATGCTTCACAAGAATGGTCTATATCAACGAATCAAGCCAATCAACAAA
TGTTACACGTGGTTGTGCAGCAATTGATGCTTGCAAGAACAACTGTGCAG
TGCAGACGGTTGGAGCAGAGAGTACACGAACGTGCGAAGATTGTTGTTAC
AAAACAAAGTGTAACATGAAGAAAAATTTGTTCGACGGAGGAATCAGCTC
TTCCTCTCATATCACCATCTCAATCCTCACCGTCCTTGGGTTGGCATTGG
TAGCCCGGCTGTTTCATTCGTGAACCACAAGTGGAAGTTCATTAGCAAGC
ATCCACTAAACATTCAAACCCATCACCATGTCATTGAAAACCAATTATCT
CGTTTGTGTTGAAGCTAGTATCATTATCTTATACAAGTTCTCTTTGAATA
TATGAATATCTAATCGCAAATTATTAATAATATCATTATGTGTATAAAAT
GCGAAGATAAATATAATTAGGTGTAGAACATGTAAATACCATTATCATTA
AAATCACAGTAATGAAATAAAGAAGCGTATATCTTACTTGTGGAGTAAAT
GCTAATAAGTGACCATCTGAACGGTACAAACTTCCGATACCAAATATCCC
CAAACTTGAATTAGGCCTACAAGAAAGTATGGATATTTGAAGCTAAAGCA
ATGCTTCAAGACTAACTGGGTTAAAATATTAGAAACGCAAGCTTTCCTTT
TCATGGAATGTTTCGTTTTTCTTGAGTGAGAGGTCTG Run BLAST on NCBI protein sequence of TCONS_00067458-protein >TCONS_00067458-protein ID=TCONS_00067458-protein|Name=TCONS_00067458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MRLFLYTATFLAVTHEVFGVSECYNNMEATTTANCTAQNNGTCFTRMVYI
NESSQSTNVTRGCAAIDACKNNCAVQTVGAESTRTCEDCCYKTKCNMKKN
LFDGGISSSSHITISILTVLGLALVARLFHS Run BLAST on NCBI transcript from alignment at scaffold_47:486878..488142+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067458 ID=TCONS_00067458|Name=TCONS_00067458|organism=Clytia hemisphaerica|type=transcript|length=1265bp|location=Sequence derived from alignment at scaffold_47:486878..488142+ (Clytia hemisphaerica)
GCTTGTCAAAGAGAAAagcgaaaaatgaaaacaaaaagagagagagagtt
gTTGTCTAGTTCAAGTTTCTGTTGGAACTGAAAAGCGATTGTGTTACTCA
AGCCACCTTATTCGTAAGCGCGTCAAAATGCGTCTTTTCTTGTACACTGC
AACTTTTTTGGCTGTCACGCACGAAGGTAAGAGCTTGCTGTCGTTAGTTT
GCTATTGTGTATAGTCGTATCTTCAAACtattaaaatttcaagcaaCTTG
AAACAAATCGATAAACAATAACTCGCAACatcttttcttctttcaaagCT
CACTAAGGCCGACTATCTGATGAAAATAATTCGATTCTTCTAAATCAAGC
TTTTCTACCTAACATGATTGTTAAATCTGCAGTCTAAATGAAAACCGGCC
TTCTCCCAATAAGAGAACGACAGTCAaatgacattttctttcaatGCTTT
TAAGTATTCGGTGTGTCTGAATGTTACAACAATATGGAAGCCACCACCAC
AGCGAATTGTACAGCGCAAAACAATGGAACATGCTTCACAAGAATGGTCT
ATATCAACGAATCAAGCCAATCAACAAATGTTACACGTGGTTGTGCAGCA
ATTGATGCTTGCAAGAACAACTGTGCAGTGCAGACGGTTGGAGCAGAGAG
TACACGAACGTGCGAAGATTGTTGTTACAAAACAAAGTGTAACATGAAGA
AAAATTTGTTCGACGGAGGAATCAGCTCTTCCTCTCATATCACCATCTCA
ATCCTCACCGTCCTTGGGTTGGCATTGGTAGCCCGGCTGTTTCATTCGTG
AACCACAAGTGGAAGTTCATTAGCAAGCATCCACTAAACATTCAAACCCA
TCACCATGTCATTGAAAACCAATTATCTCGTTTGTGTTGAAGCTAGTATC
ATTATCTTATACAAGTTCTCTTTGAATATATGAATATCTAATCGCAAATT
ATTAATAATATCATTATGTGTATAAAATGCGAAGATAAATATAATTAGGT
GTAGAACATGTAAATACCATTATCATTAAAATCACAGTAATGAAATAAAG
AAGCGTATATCTTACTTGTGGAGTAAATGCTAATAAGTGACCATCTGAAC
GGTACAAACTTCCGATACCAAATATCCCCAAACTTGAATTAGGCCTACAA
GAAAGTATGGATATTTGAAGCTAAAGCAATGCTTCAAGACTAACTGGGTT
AAAATATTAGAAACGCAAGCTTTCCTTTTCATGGAATGTTTCGTTTTTCT
TGAGTGAGAGGTCTG Coding sequence (CDS) from alignment at scaffold_47:486878..488142+ >TCONS_00067458 ID=TCONS_00067458|Name=TCONS_00067458|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_47:486878..488142+ (Clytia hemisphaerica)
ATGCGTCTTTTCTTGTACACTGCAACTTTTTTGGCTGTCACGCACGAAGT
ATTCGGTGTGTCTGAATGTTACAACAATATGGAAGCCACCACCACAGCGA
ATTGTACAGCGCAAAACAATGGAACATGCTTCACAAGAATGGTCTATATC
AACGAATCAAGCCAATCAACAAATGTTACACGTGGTTGTGCAGCAATTGA
TGCTTGCAAGAACAACTGTGCAGTGCAGACGGTTGGAGCAGAGAGTACAC
GAACGTGCGAAGATTGTTGTTACAAAACAAAGTGTAACATGAAGAAAAAT
TTGTTCGACGGAGGAATCAGCTCTTCCTCTCATATCACCATCTCAATCCT
CACCGTCCTTGGGTTGGCATTGGTAGCCCGGCTGTTTCATTCGTGAATGC
GTCTTTTCTTGTACACTGCAACTTTTTTGGCTGTCACGCACGAAGTATTC
GGTGTGTCTGAATGTTACAACAATATGGAAGCCACCACCACAGCGAATTG
TACAGCGCAAAACAATGGAACATGCTTCACAAGAATGGTCTATATCAACG
AATCAAGCCAATCAACAAATGTTACACGTGGTTGTGCAGCAATTGATGCT
TGCAAGAACAACTGTGCAGTGCAGACGGTTGGAGCAGAGAGTACACGAAC
GTGCGAAGATTGTTGTTACAAAACAAAGTGTAACATGAAGAAAAATTTGT
TCGACGGAGGAATCAGCTCTTCCTCTCATATCACCATCTCAATCCTCACC
GTCCTTGGGTTGGCATTGGTAGCCCGGCTGTTTCATTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067458-exon-scaffold_47-1491911889:486878..487053 | TCONS_00067458-exon-scaffold_47-1491911889:486878..487053 | Clytia hemisphaerica | exon |
| TCONS_00067458-exon-scaffold_47-1510915933:486878..487053 | TCONS_00067458-exon-scaffold_47-1510915933:486878..487053 | Clytia hemisphaerica | exon |
| TCONS_00067458-exon-scaffold_47-1575043694:486878..487053 | TCONS_00067458-exon-scaffold_47-1575043694:486878..487053 | Clytia hemisphaerica | exon |
| TCONS_00067458-exon-scaffold_47-1491911889:487332..488142 | TCONS_00067458-exon-scaffold_47-1491911889:487332..488142 | Clytia hemisphaerica | exon |
| TCONS_00067458-exon-scaffold_47-1510915933:487332..488142 | TCONS_00067458-exon-scaffold_47-1510915933:487332..488142 | Clytia hemisphaerica | exon |
| TCONS_00067458-exon-scaffold_47-1575043694:487332..488142 | TCONS_00067458-exon-scaffold_47-1575043694:487332..488142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_47 | supercontig | scaffold_47:486878..488142 + |
Blast
The following BLAST results are available for this feature:
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