TCONS_00067439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067439
Unique NameTCONS_00067439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067439 ID=TCONS_00067439|Name=TCONS_00067439|organism=Clytia hemisphaerica|type=transcript|length=1512bp
GTAGAATTAAACGATCTCACACACCAGTGAAAGTAGATGGTGGATTCAGC
ACCTGGAGTTCTTGGAGTATGTGCACTTTGTCGTGTGGTATTGGCTTTAG
CGAACGGGTGCGAGAATGTAATAACCCTTCACCGCTGAACGGCGGTAATC
CTTGTGTGGGCCAAACTCTTCAAACAAGACATTGTTATCATGGTGCCTGT
GAGTACCGTAAAGAAGTGCTAGAACCGATCATTGTTGACAGCGATCTTAC
CCAGTGGTCCTCATGGTCAACTTGTGATAAATCGTGCGGTATCGGGGCCA
GTCATCGAACACGCGTTTGTCACAACATCATGCCACAACCTGATTCGACG
CCTAATTGCATCGGACCTAAGTACCAGTGGCCTGCCAGACATAAGTTCAG
TCACATCAACCAATCAACTTTAGAAGTTTTTAACGGGAAATGGAgcttat
caaactttttgtcaCGACGTTATTTTTATCAGTCATTCCATACATTGCAT
GTAGTTATGTGgatttgaatttgttttgtgGAGATTACAATAATGGGCTC
ATTGATGTTGCTTGTCTTGAAAGGATTGGTGACACTCAACACATGAAAAC
GTTGATCTACAATGGACGAAATGATATCGATTGGAATAATTACGGAGCGT
CTGTTGAAAAAATCTTATGCAAATGTAAAAAGCTTGCGCAAGATTCTGAA
AAACAATATTTGAGTTTTGGAATCCAATTTTACGGTGAATGTTGGGCCAG
TGAATATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAACGTCCAACAAAT
GCGTCAACGGAACGTACAAAGAATGTCAACCACAGAATTTTCATCGTAAA
GTAGAGGGACTAAATGGAGGAGAAATTACTATCCAATCACAAGCTTGTGC
TGGTACTGATGTCTCAACTTCGCTATACACTTATTATTATCTACGAGAAG
TGGAAATCGAGACTCCAGATATTGGTAAAGAGACAGAGTGGACCTCATGG
ACAACATGTACTAAAAGTTGTGGTAAAGGATATCAAGAAAGAACACGAAC
AGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGCGATGTCCTGAAAGAAG
AGATGAGAGAATGCAACAAGCATGCATGTGaagaagagaaagaagaattT
CGACCAATCAACGGAAAATTTAGGGAATGGTCAAACTGGTCTCCATGCGT
TTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACAATCCAA
AACCTCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTTTCCAAATGAGA
CCATGCTTCAAGATGAACTGCTGagAGCCAAGAGATGTAACCAAAGGAAA
GTAAGAAGATGAATTTTTCGTATTTTGATTAAAATCAATCCATTTGTAAA
TTTATTCGTTAATTAGAACAATATCGTTCAACAAACTAAAAATTTCAGGC
TTATTTTCATGGTTCCCTATAACCATTTAAACTAGCACCACTATTTTTAC
AACAAACCAGTG
Run BLAST on NCBI

protein sequence of TCONS_00067439-protein

>TCONS_00067439-protein ID=TCONS_00067439-protein|Name=TCONS_00067439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MELIKLFVTTLFLSVIPYIACSYVDLNLFCGDYNNGLIDVACLERIGDTQ
HMKTLIYNGRNDIDWNNYGASVEKILCKCKKLAQDSEKQYLSFGIQFYGE
CWASEYSVEDLLKKVPTSNKCVNGTYKECQPQNFHRKVEGLNGGEITIQS
QACAGTDVSTSLYTYYYLREVEIETPDIGKETEWTSWTTCTKSCGKGYQE
RTRTACEMVSGVRRCDVLKEEMRECNKHACEEEKEEFRPINGKFREWSNW
SPCVCGNTAPSIRTRKCDNPKPQNSGRNCVGEPFQMRPCFKMNC
Run BLAST on NCBI

transcript from alignment at scaffold_47:139754..147694+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067439 ID=TCONS_00067439|Name=TCONS_00067439|organism=Clytia hemisphaerica|type=transcript|length=7941bp|location=Sequence derived from alignment at scaffold_47:139754..147694+ (Clytia hemisphaerica)
GTAGAATTAAACGATCTCACACACCAGTGAAAGTAGATGGTGGATTCAGC
ACCTGGAGTTCTTGGAGTATGTGCACTTTGTCGTGTGGTATTGGCTTTAG
CGAACGGGTGCGAGAATGTAATAACCCTTCACCGCTGAACGGCGGTAATC
CTTGTGTGGGCCAAACTCTTCAAACAAGACATTGTTATCATGGTGCCTGT
GGTAAGATAAATACCTTCCCGTGGAGTACATTTGCGAAGCTTTCAAAGTG
CTAGGAAGAGTAGTTGAATGCGGAGTTAAATAATTCTTGGCCTTCAAAAA
CTAGACCCAATAATATCACTTTAAATAATGCGACTTTACAGATCCTTTGT
TATTATCAAGTCATTTAAACAACCTACTGGATATTACTTCCTTATCTTTT
TTTCACCTAGAGTACCGTAAAGAAGTGCTAGAACCGATCATTGTTGACAG
CGATCTTACCCAGTGGTCCTCATGGTCAACTTGTGATAAATCGTGCGGTA
TCGGGGCCAGTCATCGAACACGCGTTTGTCACAACATCATGCCACAACCT
GATTCGACGCCTAATTGCATCGGACCTAAGTACCAGTTACGACAATGTTT
TTTAAGGATATGtaattgaaaattcaattttaaacaTTTCGAAGGATTAA
ATCCATCTTATGAATAATTGCATTGGGTTATTATTTCAAGGAACGGTAGA
AGTAACCATTTCTTTCGTAATTTATTTGTTGGAACGATTTTTAGAGGGAA
AAACTGGGTATTTTATTGTTGTTGAAAATATCTTTgtgtacatttttatt
tgaacCACTTCCAATTGTTATTGAAGAATTTGACTGTTTCCTGGTAACTT
CTAACAGGCAGCATGttcaatttattgtttttaaatcttCCAAGCAACCT
CATTAGAGATCAGTCAGGCCGCTAATGTCAGAACCAAATAAAAACGATAC
CAAAAATTATAATGAACCTTGATTAAATTTACATTTCGATTCTAAACTGT
TTGAATGTTGATTTGATTAAATCatgatataaaaatataaattcagGTGG
CCTGCCAGACATAAGTTCAGTCACATCAACCAATCAACTTTAGAAGTTTT
TAACGGGAAATGGAgcttatcaaactttttgtcaCGACGTTATTTTTATC
AGGTAAGCTATACTTCTAATGACCTTTGATAAATTCTTTGAAAGGCTGAT
AATATTTTTGGGctctcacttttgttttcataaagttttctattcataaa
atggCCTTATACatgttatatgcaatttttttgacgtcaccTCTGACAAA
CCTATTGTCTAACCACTTTCCTAGTTAATAATGACTAGAAAATCTTTTCT
CAAACTTCAAGCTTGAAGCTTTCTATAATTTCGTTTTCTTTGCTTTCAGT
CATTCCATACATTGCATGTAGTTATGTGgatttgaatttgttttgtgAAG
AATACAGTGACGGGCTCATTGATGTTGCTTGTGTTGAAAAAGTTGGTAAC
ACTCAACATATGAAAAAATTGATCTACAATGGACGAAATGATATCGACTG
GGAGCGCTATGGTAAATCTATAAAGAGGTTCGTACTTTGTAATACTGTAT
AGAAGAGgccaattttcacgcattcacgcaaccaaaaatgcCTATTCACG
CATTCCGGGATAGGGGGTGCCTTAGATAAATttagatttgagattttttt
aaaagtaataCAACACTCTGCATTACAAGTTTTAAGTGGTTGGACTTAAC
CATAAATCTGATACCCATTATCGTCTAGCCCTAGAACAATCGGTCTACTG
TTGTCAAATCTAATCTTTGGACGCTGTAAAATACGTGTCCAGAAGACCTC
AGTTTTccaataattttgttttttcgtttttatagaATTCTTTGTAAATG
TAATGAATTGGTGAAGAAATCAGGAAAGAAATATTTAACATTGGGAATAC
AATTTTATGGAGAATGTTGGGTTAGTGAACATCGagttgaagatatttta
aaagaAGTTCCGAAATCGAAATTGTGCGTGAACCATAAATACAAAGCATG
CAAACCTAGAAGTTTCCACCAGAAAGCAGCAGGGCGTAACGGATACGAGA
TCAAAGTTAATACACACGCATGCGCAGGGAATGACAAATCGACTGCCTTG
TACACTTATTGTGAGTATTTATTTTAATctctttgaaaatatatttcttt
tttcagcaATGTTTCCACCATCTTTCTAGGACCTAAAAATTCTACATCCC
TTGTTGGCAATGATTTTATGTTCGTTTATCTTTTGGTCTATGAATTATTA
TGATGTGTGGGGGTCCCCCAAATCCCTTTCTTAGTGGATAGAAAAGCCCT
GATAGATATCAAATATATCTATGATATCAGACCAGACTGGAACACTTTAT
TTGGATCATCTGATAGATTATGATTAACATTTTTCCAATTATCTTAACTT
TACCCTCAGATCATTTGCATGAGATTCAAATTGAGGTCTTGGAAGAAGCA
AAAGAGACAGAGTGGACCTCATGGACAACATGCAGTAAAAGTTGTGGTAA
AGGATATCAAGAAAGATCACGAACAGCTTGTGAAATGGTCTCTGGTGTTC
ACAGATGCGATGTCATGAAGGTGGACAGACGTGAATGTAATTACCAAAGT
TGTGGTAAGAAATCCTCGAAGAAATCTATctagaaaaacgttaaaaacaa
cattttgtaGCCTTTCAAAATTCTGTTGGATAAAAATATGTGTTTAGCAA
TTGCTGTCACATGCAATTTACACTTTTGGTCAATGCACCTGACTCTTCAT
ATGCTACTCCGAGCTACTCctcatttttataagcatctccaattttcggg
tcagtcCTGGGAtcgcttagcattctagctcattttttgaaatatttgct
tcgACCACGCTTGATATCATACCATATTTATACTTATTtggtcaagggct
atcgttaGACATGGTTAGATTATCTTATagaaaaagcttttactttacaa
GATAGGGAAACAAATTTAGCTAATTTGCGGCTTCAAGCCTTAGCAATCTG
GTTGCTTGTCAAATGGAAAATGTTTCACAGAAAGGATATAGGTTTTAAAC
ATTGATTTCACAATTTACAATTTTAATCTAGCCTTGACGGAGCCAGCGAA
AGCAGCATTTCGACCAATCAATGGAGGTTTTAGTGAATGGACAAGTTGGA
CACCGTGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGT
GACAATCCAAAACCTCAAAATTCTGGCAAAAATTGTGTCGGTGAaccttt
tcaaatgaaattgtgcaaatatgaagaatgttaaaTTTAAGAATCTGGTT
ATATCTTTGTATTGATTATGTTATGGTATTGGCAAATTTGTTTTTGTCTT
AACTCTTTTCGGTCGAATCatcttttaaatatttaattGTTAACTTATCG
TAGAGACTAATCTAATTTATGAGTCAGCAAGTGACGTTTTATGTATGCCA
TCCAAAACGCAATAGCTTGATTGCTAAATGTTTGTAATTTTCATGGGTTT
CGTTTTCATGAAATGTAAtccttttttgataaataaataaatcaaacaaa
ttcattttctgtttttaatttcaaagggtgaagattgaatttgaaaagtc
aaCTTTACTTCAAAGCGACAAAAGGGGGCCGAGTAAACacgtgaaaatga
agaaaaaatgaaaaacaattttcCCTTTCGAGAACAAAACTTTGTATCAA
GTATTAGTTTAGCagcttaaccctttaagtgccgatgtcgtatatatacg
acatgggctatataggagggcgaagccctcctgtaatgcccagtttgagt
tagaaatcgttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAATACAGCTCCTTC
AATTAGAACAAGAAAATGTGACAATCCAAAACCTCAAAATTCTGGCAAAA
ATTGTGTCGGTGAaccttttcaaatgaaattgtgcaaatatgaagaatgt
taaaTTTAAGAATCTGGTTATATCTTTGTATTGATTATGTTATGGTATTG
GCAAATTTGTTTTTGTCTTAACTCTTTTCGGTCGAATCatcttttaaata
tttaattGTTAACTTATCGTAGAGACTAATCTAATTTATGAGTCAGCAAG
TGACGTTTTATGTATGCCATCCAAAACGCAACAGCTTGATTGCTAAATGT
TTGTAATTTTCATGGGTTTCGTTTTCATGAAATGTAAtccttttttgatg
tttttggcgacatcaataaaaaatcaaacaaattcattttctgtttttaa
tttcaaagggtgaagattgaatttgaaaagtcaaCTTTACTTCAAAGCGA
CAAAAGGGGGCCGAGTAAACacgtgaaaatgaagaaaaaatgaaaaacaa
ttttcCCTTTCGAGAACAAAACTTTGTATCAAGTATTAGTTTAGCAGGTT
AAGCAACATTCATGCGTAAATTGAAAACGCTATCCGTTAAAACCAAATAC
GATCTTCAAATATTTGATTAACTGTAATTTGCAGGTGTAGACCAAAACCC
TTTGTGCTTTTATTCGCCCTTTGCAATTGTTAGTAGCTTAGTATAAAATT
CAAGAACCGTCTACGGTCAAGTTAATATgcaaaaacttatttttagaaAC
GGTTCAGAGTGTTGGTTTTTAGACTCTTTAAAATGaatacaatcaaaatt
tcaacttttacaCTTTTATTATCAGGTAAGTCATTTTTTGGAAGTTTAGT
TGCGGTCATTTTTTGCCGTTATTCTTAGCCACGTGATGTCTggtattaca
cttttttttataagagcatctaaattttaaagccttcggattttcttaaa
ctttttaagtttcaaatgttcttcaaatttttcctcttttttctatattt
ttgtcTGTCTTCGAGTCCgcaaagctttttaaaaatattctcaacttgtt
cttaatattttggccatcgaagccttatgttcttatagtttgttccTATG
AAACAACGTGTACCATTTAATCTCTGCATTAGTTTTGAAGACTCCCCAAC
TGGTCATCTTAATCATACTTCTGGCAAAATGAAGATACTAAAGCAATCAT
AGGCTTTCACTGTTCCTCATCCGGGGCTAAAATGTTAACAATTTTGACGT
GTATAGTATATATCTTTTTCGCTCTTTCAGTCATTCCATACATTGCATGT
AGTTATGTGgatttgaatttgttttgtgGAGATTACAATAATGGGCTCAT
TGATGTTGCTTGTCTTGAAAGGATTGGTGACACTCAACACATGAAAACGT
TGATCTACAATGGACGAAATGATATCGATTGGAATAATTACGGAGCGTCT
GTTGAAAAGTATGATCACTTTGTACTTATTTATACTCTATGTTTTAttca
aattatcaattttaaCACTTTGAAGATTATTTCAAGATAAGATCCAAGGT
TCTGCACCCCGTCACTGATCCACTGAGTTGCACTAGTGTATGTGAATTAT
CTTCAAAAAATGACATCATCCCTTGTTTGTCATTCGGTTAAGGATTTCTG
TAAAAGTAATTCTACAGTTTGCACCGAATGgccttttaaataattttgtt
tttctgcCATTATAGAATCTTATGCAAATGTAAAAAGCTTGCGCAAGATT
CTGAAAAACAATATTTGAGTTTTGGAATCCAATTTTACGGTGAATGTTGG
GCCAGTGAATATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAACGTCCAA
CAAATGCGTCAACGGAACGTACAAAGAATGTCAACCACAGAATTTTCATC
GTAAAGTAGAGGGACTAAATGGAGGAGAAATTACTATCCAATCACAAGCT
TGTGCTGGTACTGATGTCTCAACTTCGCTATACACTTATTGTGAGTATTG
TATTGTTGTTGTTAGCGCTCAGACGTATGACATTTATTTCAAAACGCAAG
ATAAACTAGTTGTCATCAGTGCAAATTCTTTATAACCTTTGAGGTTATTT
TATATTAACTTCTTTTTTGTCAAAACGCCTTGAAACAatcgaatttggcc
aaaaatctaaaaattttaacaacCTATGACATTGGATTTTATTTCATAGC
TTCCACAATcctggccataatatttgagacNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcattcattcattcattcattcattcatattcATTTACTTTAAGATT
ATCTACGAGAAGTGGAAATCGAGACTCCAGATATTGGTAAAGAGACAGAG
TGGACCTCATGGACAACATGTACTAAAAGTTGTGGTAAAGGATATCAAGA
AAGAACACGAACAGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGCGATG
TCCTGAAAGAAGAGATGAGAGAATGCAACAAGCATGCATGTGGTTAGCAT
TTCTTCACTACTCTTACCCTCATTTTTTTAATAGAGACCTCGAGCTCGAA
TTTGATACTGTCAAATTGGTCATCGCCAAAGATGAGTTATTCAGTTATTC
AGAATCTGTTCTATCCAAATCTTTTTGACACCCTTTGTTAATTTTATGTG
GTGAATTCGAATCACAAGTCAGTGAAAACAACACTTTATACGTACAGATA
TGTTTAATACGAAATGGGCTAGGAAAAGTAATAAATAAACAACCTAGAAT
GTTTTTTGAATTCAAACTAATATTTCTTATTTagaagaagagaaagaaga
attTCGACCAATCAACGGAAAATTTAGGGAATGGTCAAACTGGTCTCCAT
GCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACAAT
CCAAAACCTCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTTTCCAAAT
GAGACCATGCTTCAAGATGAACTGCTGGTAAGAAGAGCTCGGTTATTTTT
TTCGCTATAGAAGAttcaagtttttaatttttagacgTCGTCACAAAATG
ATGCAGAATTGAAGGTTTTTTTTGCTAATATGTAAATTTAAATAGCCTGT
CACTAAACTCGACCTTGTTACCCTTGAGTTTGTATTGAGGAATCAATTAC
AGAGACAAGTTTTGGAATTTATGTGAAATATTtgctcttttcttttttct
agagAGCCAAGAGATGTAACCAAAGGAAAGTAAGAAGATGAATTTTTCGT
ATTTTGATTAAAATCAATCCATTTGTAAATTTATTCGTTAATTAGAACAA
TATCGTTCAACAAACTAAAAATTTCAGGCTTATTTTCATGGTTCCCTATA
ACCATTTAAACTAGCACCACTATTTTTACAACAAACCAGTG

Coding sequence (CDS) from alignment at scaffold_47:139754..147694+

>TCONS_00067439 ID=TCONS_00067439|Name=TCONS_00067439|organism=Clytia hemisphaerica|type=CDS|length=5310bp|location=Sequence derived from alignment at scaffold_47:139754..147694+ (Clytia hemisphaerica)
ATGGAgcttatcaaactttttgtcaCGACGTTATTTTTATCAGTCATTCC
ATACATTGCATGTAGTTATGTGgatttgaatttgttttgtgGAGATTACA
ATAATGGGCTCATTGATGTTGCTTGTCTTGAAAGGATTGGTGACACTCAA
CACATGAAAACGTTGATCTACAATGGACGAAATGATATCGATTGGAATAA
TTACGGAGCGTCTGTTGAAAAAATCTTATGCAAATGTAAAAAGCTTGCGC
AAGATTCTGAAAAACAATATTTGAGTTTTGGAATCCAATTTTACGGTGAA
TGTTGGGCCAGTGAATATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAAC
GTCCAACAAATGCGTCAACGGAACGTACAAAGAATGTCAACCACAGAATT
TTCATCGTAAAGTAGAGGGACTAAATGGAGGAGAAATTACTATCCAATCA
CAAGCTTGTGCTGGTACTGATGTCTCAACTTCGCTATACACTTATTATTA
TCTACGAGAAGTGGAAATCGAGACTCCAGATATTGGTAAAGAGACAGAGT
GGACCTCATGGACAACATGTACTAAAAGTTGTGGTAAAGGATATCAAGAA
AGAACACGAACAGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGCGATGT
CCTGAAAGAAGAGATGAGAGAATGCAACAAGCATGCATGTGaagaagaga
aagaagaattTCGACCAATCAACGGAAAATTTAGGGAATGGTCAAACTGG
TCTCCATGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATG
TGACAATCCAAAACCTCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTT
TCCAAATGAGACCATGCTTCAAGATGAACTGCTGaATGGAgcttatcaaa
ctttttgtcaCGACGTTATTTTTATCAGTCATTCCATACATTGCATGTAG
TTATGTGgatttgaatttgttttgtgGAGATTACAATAATGGGCTCATTG
ATGTTGCTTGTCTTGAAAGGATTGGTGACACTCAACACATGAAAACGTTG
ATCTACAATGGACGAAATGATATCGATTGGAATAATTACGGAGCGTCTGT
TGAAAAAATCTTATGCAAATGTAAAAAGCTTGCGCAAGATTCTGAAAAAC
AATATTTGAGTTTTGGAATCCAATTTTACGGTGAATGTTGGGCCAGTGAA
TATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAACGTCCAACAAATGCGT
CAACGGAACGTACAAAGAATGTCAACCACAGAATTTTCATCGTAAAGTAG
AGGGACTAAATGGAGGAGAAATTACTATCCAATCACAAGCTTGTGCTGGT
ACTGATGTCTCAACTTCGCTATACACTTATTATTATCTACGAGAAGTGGA
AATCGAGACTCCAGATATTGGTAAAGAGACAGAGTGGACCTCATGGACAA
CATGTACTAAAAGTTGTGGTAAAGGATATCAAGAAAGAACACGAACAGCT
TGTGAAATGGTCTCTGGTGTTCGCAGATGCGATGTCCTGAAAGAAGAGAT
GAGAGAATGCAACAAGCATGCATGTGaagaagagaaagaagaattTCGAC
CAATCAACGGAAAATTTAGGGAATGGTCAAACTGGTCTCCATGCGTTTGT
GGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACAATCCAAAACC
TCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTTTCCAAATGAGACCAT
GCTTCAAGATGAACTGCTGaATGGAgcttatcaaactttttgtcaCGACG
TTATTTTTATCAGTCATTCCATACATTGCATGTAGTTATGTGgatttgaa
tttgttttgtgGAGATTACAATAATGGGCTCATTGATGTTGCTTGTCTTG
AAAGGATTGGTGACACTCAACACATGAAAACGTTGATCTACAATGGACGA
AATGATATCGATTGGAATAATTACGGAGCGTCTGTTGAAAAAATCTTATG
CAAATGTAAAAAGCTTGCGCAAGATTCTGAAAAACAATATTTGAGTTTTG
GAATCCAATTTTACGGTGAATGTTGGGCCAGTGAATATTCAGTTGAAGAC
CTCTTGAAGAAAGTTCCAACGTCCAACAAATGCGTCAACGGAACGTACAA
AGAATGTCAACCACAGAATTTTCATCGTAAAGTAGAGGGACTAAATGGAG
GAGAAATTACTATCCAATCACAAGCTTGTGCTGGTACTGATGTCTCAACT
TCGCTATACACTTATTATTATCTACGAGAAGTGGAAATCGAGACTCCAGA
TATTGGTAAAGAGACAGAGTGGACCTCATGGACAACATGTACTAAAAGTT
GTGGTAAAGGATATCAAGAAAGAACACGAACAGCTTGTGAAATGGTCTCT
GGTGTTCGCAGATGCGATGTCCTGAAAGAAGAGATGAGAGAATGCAACAA
GCATGCATGTGaagaagagaaagaagaattTCGACCAATCAACGGAAAAT
TTAGGGAATGGTCAAACTGGTCTCCATGCGTTTGTGGAAATACAGCTCCT
TCAATTAGAACAAGAAAATGTGACAATCCAAAACCTCAAAATTCTGGCAG
AAATTGTGTCGGTGAACCTTTCCAAATGAGACCATGCTTCAAGATGAACT
GCTGaATGGAgcttatcaaactttttgtcaCGACGTTATTTTTATCAGTC
ATTCCATACATTGCATGTAGTTATGTGgatttgaatttgttttgtgGAGA
TTACAATAATGGGCTCATTGATGTTGCTTGTCTTGAAAGGATTGGTGACA
CTCAACACATGAAAACGTTGATCTACAATGGACGAAATGATATCGATTGG
AATAATTACGGAGCGTCTGTTGAAAAAATCTTATGCAAATGTAAAAAGCT
TGCGCAAGATTCTGAAAAACAATATTTGAGTTTTGGAATCCAATTTTACG
GTGAATGTTGGGCCAGTGAATATTCAGTTGAAGACCTCTTGAAGAAAGTT
CCAACGTCCAACAAATGCGTCAACGGAACGTACAAAGAATGTCAACCACA
GAATTTTCATCGTAAAGTAGAGGGACTAAATGGAGGAGAAATTACTATCC
AATCACAAGCTTGTGCTGGTACTGATGTCTCAACTTCGCTATACACTTAT
TATTATCTACGAGAAGTGGAAATCGAGACTCCAGATATTGGTAAAGAGAC
AGAGTGGACCTCATGGACAACATGTACTAAAAGTTGTGGTAAAGGATATC
AAGAAAGAACACGAACAGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGC
GATGTCCTGAAAGAAGAGATGAGAGAATGCAACAAGCATGCATGTGaaga
agagaaagaagaattTCGACCAATCAACGGAAAATTTAGGGAATGGTCAA
ACTGGTCTCCATGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGA
AAATGTGACAATCCAAAACCTCAAAATTCTGGCAGAAATTGTGTCGGTGA
ACCTTTCCAAATGAGACCATGCTTCAAGATGAACTGCTGaATGGAgctta
tcaaactttttgtcaCGACGTTATTTTTATCAGTCATTCCATACATTGCA
TGTAGTTATGTGgatttgaatttgttttgtgGAGATTACAATAATGGGCT
CATTGATGTTGCTTGTCTTGAAAGGATTGGTGACACTCAACACATGAAAA
CGTTGATCTACAATGGACGAAATGATATCGATTGGAATAATTACGGAGCG
TCTGTTGAAAAAATCTTATGCAAATGTAAAAAGCTTGCGCAAGATTCTGA
AAAACAATATTTGAGTTTTGGAATCCAATTTTACGGTGAATGTTGGGCCA
GTGAATATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAACGTCCAACAAA
TGCGTCAACGGAACGTACAAAGAATGTCAACCACAGAATTTTCATCGTAA
AGTAGAGGGACTAAATGGAGGAGAAATTACTATCCAATCACAAGCTTGTG
CTGGTACTGATGTCTCAACTTCGCTATACACTTATTATTATCTACGAGAA
GTGGAAATCGAGACTCCAGATATTGGTAAAGAGACAGAGTGGACCTCATG
GACAACATGTACTAAAAGTTGTGGTAAAGGATATCAAGAAAGAACACGAA
CAGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGCGATGTCCTGAAAGAA
GAGATGAGAGAATGCAACAAGCATGCATGTGaagaagagaaagaagaatt
TCGACCAATCAACGGAAAATTTAGGGAATGGTCAAACTGGTCTCCATGCG
TTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACAATCCA
AAACCTCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTTTCCAAATGAG
ACCATGCTTCAAGATGAACTGCTGaATGGAgcttatcaaactttttgtca
CGACGTTATTTTTATCAGTCATTCCATACATTGCATGTAGTTATGTGgat
ttgaatttgttttgtgGAGATTACAATAATGGGCTCATTGATGTTGCTTG
TCTTGAAAGGATTGGTGACACTCAACACATGAAAACGTTGATCTACAATG
GACGAAATGATATCGATTGGAATAATTACGGAGCGTCTGTTGAAAAAATC
TTATGCAAATGTAAAAAGCTTGCGCAAGATTCTGAAAAACAATATTTGAG
TTTTGGAATCCAATTTTACGGTGAATGTTGGGCCAGTGAATATTCAGTTG
AAGACCTCTTGAAGAAAGTTCCAACGTCCAACAAATGCGTCAACGGAACG
TACAAAGAATGTCAACCACAGAATTTTCATCGTAAAGTAGAGGGACTAAA
TGGAGGAGAAATTACTATCCAATCACAAGCTTGTGCTGGTACTGATGTCT
CAACTTCGCTATACACTTATTATTATCTACGAGAAGTGGAAATCGAGACT
CCAGATATTGGTAAAGAGACAGAGTGGACCTCATGGACAACATGTACTAA
AAGTTGTGGTAAAGGATATCAAGAAAGAACACGAACAGCTTGTGAAATGG
TCTCTGGTGTTCGCAGATGCGATGTCCTGAAAGAAGAGATGAGAGAATGC
AACAAGCATGCATGTGaagaagagaaagaagaattTCGACCAATCAACGG
AAAATTTAGGGAATGGTCAAACTGGTCTCCATGCGTTTGTGGAAATACAG
CTCCTTCAATTAGAACAAGAAAATGTGACAATCCAAAACCTCAAAATTCT
GGCAGAAATTGTGTCGGTGAACCTTTCCAAATGAGACCATGCTTCAAGAT
GAACTGCTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042126XLOC_042126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067439-proteinTCONS_00067439-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067439-exon-scaffold_47-1491911889:139754..139954TCONS_00067439-exon-scaffold_47-1491911889:139754..139954Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:139754..139954TCONS_00067439-exon-scaffold_47-1510915933:139754..139954Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:139754..139954TCONS_00067439-exon-scaffold_47-1575043694:139754..139954Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1491911889:140164..140338TCONS_00067439-exon-scaffold_47-1491911889:140164..140338Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:140164..140338TCONS_00067439-exon-scaffold_47-1510915933:140164..140338Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:140164..140338TCONS_00067439-exon-scaffold_47-1575043694:140164..140338Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1491911889:140800..140905TCONS_00067439-exon-scaffold_47-1491911889:140800..140905Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:140800..140905TCONS_00067439-exon-scaffold_47-1510915933:140800..140905Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:140800..140905TCONS_00067439-exon-scaffold_47-1575043694:140800..140905Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1491911889:145184..145361TCONS_00067439-exon-scaffold_47-1491911889:145184..145361Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:145184..145361TCONS_00067439-exon-scaffold_47-1510915933:145184..145361Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:145184..145361TCONS_00067439-exon-scaffold_47-1575043694:145184..145361Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1491911889:145619..145893TCONS_00067439-exon-scaffold_47-1491911889:145619..145893Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:145619..145893TCONS_00067439-exon-scaffold_47-1510915933:145619..145893Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:145619..145893TCONS_00067439-exon-scaffold_47-1575043694:145619..145893Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1491911889:146601..146795TCONS_00067439-exon-scaffold_47-1491911889:146601..146795Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:146601..146795TCONS_00067439-exon-scaffold_47-1510915933:146601..146795Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:146601..146795TCONS_00067439-exon-scaffold_47-1575043694:146601..146795Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1491911889:147088..147280TCONS_00067439-exon-scaffold_47-1491911889:147088..147280Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:147088..147280TCONS_00067439-exon-scaffold_47-1510915933:147088..147280Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:147088..147280TCONS_00067439-exon-scaffold_47-1575043694:147088..147280Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1491911889:147506..147694TCONS_00067439-exon-scaffold_47-1491911889:147506..147694Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1510915933:147506..147694TCONS_00067439-exon-scaffold_47-1510915933:147506..147694Clytia hemisphaericaexon
TCONS_00067439-exon-scaffold_47-1575043694:147506..147694TCONS_00067439-exon-scaffold_47-1575043694:147506..147694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:139754..147694 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0843635	0.0681093	0.0748631	0	0	0.191961	0.356834	0.272536	0.308235	0.151255	0.116848	0.0960162	16.1871	10.6182	0.182526	0.46688	8.95198	11.0759	68.0451	87.0246	24.5529	21.8834	6.33989	10.4219	15.1286	15.2386	0.0563044	0.0600896	0.0911517	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00067439 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.735e-19
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 3 
Query:    6 IKRSHTPVKVDGGFSTWSSWSMCTLSCGIGFSERVRECNNPSPLNGGNPCVGQTLQTRHCYHGACEYRKEVLEPIIVDSDLTQWSSWSTCDKSCGIGASHRTRVCHN 326
            + R    V+V GGFS WS+W  C+++CG G  +R R CN P P NGG PC G  L+ R+C +  C           VD   ++WS W  C +SCG G   RTR C+N
Sbjct: 4519 LVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP----------VDGSWSEWSLWEECTRSCGRGNQTRTRTCNN 4615
The following BLAST results are available for this feature:
BLAST of TCONS_00067439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.735e-1942.06Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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