XLOC_042126 (gene) - C. hemisphaerica

Overview
NameXLOC_042126
Unique NameXLOC_042126
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_47:139752..147694+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042126 ID=XLOC_042126|Name=XLOC_042126|organism=Clytia hemisphaerica|type=gene|length=7943bp|location=Sequence derived from alignment at scaffold_47:139752..147694+ (Clytia hemisphaerica)
AGGTAGAATTAAACGATCTCACACACCAGTGAAAGTAGATGGTGGATTCA
GCACCTGGAGTTCTTGGAGTATGTGCACTTTGTCGTGTGGTATTGGCTTT
AGCGAACGGGTGCGAGAATGTAATAACCCTTCACCGCTGAACGGCGGTAA
TCCTTGTGTGGGCCAAACTCTTCAAACAAGACATTGTTATCATGGTGCCT
GTGGTAAGATAAATACCTTCCCGTGGAGTACATTTGCGAAGCTTTCAAAG
TGCTAGGAAGAGTAGTTGAATGCGGAGTTAAATAATTCTTGGCCTTCAAA
AACTAGACCCAATAATATCACTTTAAATAATGCGACTTTACAGATCCTTT
GTTATTATCAAGTCATTTAAACAACCTACTGGATATTACTTCCTTATCTT
TTTTTCACCTAGAGTACCGTAAAGAAGTGCTAGAACCGATCATTGTTGAC
AGCGATCTTACCCAGTGGTCCTCATGGTCAACTTGTGATAAATCGTGCGG
TATCGGGGCCAGTCATCGAACACGCGTTTGTCACAACATCATGCCACAAC
CTGATTCGACGCCTAATTGCATCGGACCTAAGTACCAGTTACGACAATGT
TTTTTAAGGATATGtaattgaaaattcaattttaaacaTTTCGAAGGATT
AAATCCATCTTATGAATAATTGCATTGGGTTATTATTTCAAGGAACGGTA
GAAGTAACCATTTCTTTCGTAATTTATTTGTTGGAACGATTTTTAGAGGG
AAAAACTGGGTATTTTATTGTTGTTGAAAATATCTTTgtgtacattttta
tttgaacCACTTCCAATTGTTATTGAAGAATTTGACTGTTTCCTGGTAAC
TTCTAACAGGCAGCATGttcaatttattgtttttaaatcttCCAAGCAAC
CTCATTAGAGATCAGTCAGGCCGCTAATGTCAGAACCAAATAAAAACGAT
ACCAAAAATTATAATGAACCTTGATTAAATTTACATTTCGATTCTAAACT
GTTTGAATGTTGATTTGATTAAATCatgatataaaaatataaattcagGT
GGCCTGCCAGACATAAGTTCAGTCACATCAACCAATCAACTTTAGAAGTT
TTTAACGGGAAATGGAgcttatcaaactttttgtcaCGACGTTATTTTTA
TCAGGTAAGCTATACTTCTAATGACCTTTGATAAATTCTTTGAAAGGCTG
ATAATATTTTTGGGctctcacttttgttttcataaagttttctattcata
aaatggCCTTATACatgttatatgcaatttttttgacgtcaccTCTGACA
AACCTATTGTCTAACCACTTTCCTAGTTAATAATGACTAGAAAATCTTTT
CTCAAACTTCAAGCTTGAAGCTTTCTATAATTTCGTTTTCTTTGCTTTCA
GTCATTCCATACATTGCATGTAGTTATGTGgatttgaatttgttttgtgA
AGAATACAGTGACGGGCTCATTGATGTTGCTTGTGTTGAAAAAGTTGGTA
ACACTCAACATATGAAAAAATTGATCTACAATGGACGAAATGATATCGAC
TGGGAGCGCTATGGTAAATCTATAAAGAGGTTCGTACTTTGTAATACTGT
ATAGAAGAGgccaattttcacgcattcacgcaaccaaaaatgcCTATTCA
CGCATTCCGGGATAGGGGGTGCCTTAGATAAATttagatttgagattttt
ttaaaagtaataCAACACTCTGCATTACAAGTTTTAAGTGGTTGGACTTA
ACCATAAATCTGATACCCATTATCGTCTAGCCCTAGAACAATCGGTCTAC
TGTTGTCAAATCTAATCTTTGGACGCTGTAAAATACGTGTCCAGAAGACC
TCAGTTTTccaataattttgttttttcgtttttatagaATTCTTTGTAAA
TGTAATGAATTGGTGAAGAAATCAGGAAAGAAATATTTAACATTGGGAAT
ACAATTTTATGGAGAATGTTGGGTTAGTGAACATCGagttgaagatattt
taaaagaAGTTCCGAAATCGAAATTGTGCGTGAACCATAAATACAAAGCA
TGCAAACCTAGAAGTTTCCACCAGAAAGCAGCAGGGCGTAACGGATACGA
GATCAAAGTTAATACACACGCATGCGCAGGGAATGACAAATCGACTGCCT
TGTACACTTATTGTGAGTATTTATTTTAATctctttgaaaatatatttct
tttttcagcaATGTTTCCACCATCTTTCTAGGACCTAAAAATTCTACATC
CCTTGTTGGCAATGATTTTATGTTCGTTTATCTTTTGGTCTATGAATTAT
TATGATGTGTGGGGGTCCCCCAAATCCCTTTCTTAGTGGATAGAAAAGCC
CTGATAGATATCAAATATATCTATGATATCAGACCAGACTGGAACACTTT
ATTTGGATCATCTGATAGATTATGATTAACATTTTTCCAATTATCTTAAC
TTTACCCTCAGATCATTTGCATGAGATTCAAATTGAGGTCTTGGAAGAAG
CAAAAGAGACAGAGTGGACCTCATGGACAACATGCAGTAAAAGTTGTGGT
AAAGGATATCAAGAAAGATCACGAACAGCTTGTGAAATGGTCTCTGGTGT
TCACAGATGCGATGTCATGAAGGTGGACAGACGTGAATGTAATTACCAAA
GTTGTGGTAAGAAATCCTCGAAGAAATCTATctagaaaaacgttaaaaac
aacattttgtaGCCTTTCAAAATTCTGTTGGATAAAAATATGTGTTTAGC
AATTGCTGTCACATGCAATTTACACTTTTGGTCAATGCACCTGACTCTTC
ATATGCTACTCCGAGCTACTCctcatttttataagcatctccaattttcg
ggtcagtcCTGGGAtcgcttagcattctagctcattttttgaaatatttg
cttcgACCACGCTTGATATCATACCATATTTATACTTATTtggtcaaggg
ctatcgttaGACATGGTTAGATTATCTTATagaaaaagcttttactttac
aaGATAGGGAAACAAATTTAGCTAATTTGCGGCTTCAAGCCTTAGCAATC
TGGTTGCTTGTCAAATGGAAAATGTTTCACAGAAAGGATATAGGTTTTAA
ACATTGATTTCACAATTTACAATTTTAATCTAGCCTTGACGGAGCCAGCG
AAAGCAGCATTTCGACCAATCAATGGAGGTTTTAGTGAATGGACAAGTTG
GACACCGTGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAAT
GTGACAATCCAAAACCTCAAAATTCTGGCAAAAATTGTGTCGGTGAacct
tttcaaatgaaattgtgcaaatatgaagaatgttaaaTTTAAGAATCTGG
TTATATCTTTGTATTGATTATGTTATGGTATTGGCAAATTTGTTTTTGTC
TTAACTCTTTTCGGTCGAATCatcttttaaatatttaattGTTAACTTAT
CGTAGAGACTAATCTAATTTATGAGTCAGCAAGTGACGTTTTATGTATGC
CATCCAAAACGCAATAGCTTGATTGCTAAATGTTTGTAATTTTCATGGGT
TTCGTTTTCATGAAATGTAAtccttttttgataaataaataaatcaaaca
aattcattttctgtttttaatttcaaagggtgaagattgaatttgaaaag
tcaaCTTTACTTCAAAGCGACAAAAGGGGGCCGAGTAAACacgtgaaaat
gaagaaaaaatgaaaaacaattttcCCTTTCGAGAACAAAACTTTGTATC
AAGTATTAGTTTAGCagcttaaccctttaagtgccgatgtcgtatatata
cgacatgggctatataggagggcgaagccctcctgtaatgcccagtttga
gttagaaatcgttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAATACAGCTCCT
TCAATTAGAACAAGAAAATGTGACAATCCAAAACCTCAAAATTCTGGCAA
AAATTGTGTCGGTGAaccttttcaaatgaaattgtgcaaatatgaagaat
gttaaaTTTAAGAATCTGGTTATATCTTTGTATTGATTATGTTATGGTAT
TGGCAAATTTGTTTTTGTCTTAACTCTTTTCGGTCGAATCatcttttaaa
tatttaattGTTAACTTATCGTAGAGACTAATCTAATTTATGAGTCAGCA
AGTGACGTTTTATGTATGCCATCCAAAACGCAACAGCTTGATTGCTAAAT
GTTTGTAATTTTCATGGGTTTCGTTTTCATGAAATGTAAtccttttttga
tgtttttggcgacatcaataaaaaatcaaacaaattcattttctgttttt
aatttcaaagggtgaagattgaatttgaaaagtcaaCTTTACTTCAAAGC
GACAAAAGGGGGCCGAGTAAACacgtgaaaatgaagaaaaaatgaaaaac
aattttcCCTTTCGAGAACAAAACTTTGTATCAAGTATTAGTTTAGCAGG
TTAAGCAACATTCATGCGTAAATTGAAAACGCTATCCGTTAAAACCAAAT
ACGATCTTCAAATATTTGATTAACTGTAATTTGCAGGTGTAGACCAAAAC
CCTTTGTGCTTTTATTCGCCCTTTGCAATTGTTAGTAGCTTAGTATAAAA
TTCAAGAACCGTCTACGGTCAAGTTAATATgcaaaaacttatttttagaa
ACGGTTCAGAGTGTTGGTTTTTAGACTCTTTAAAATGaatacaatcaaaa
tttcaacttttacaCTTTTATTATCAGGTAAGTCATTTTTTGGAAGTTTA
GTTGCGGTCATTTTTTGCCGTTATTCTTAGCCACGTGATGTCTggtatta
cacttttttttataagagcatctaaattttaaagccttcggattttctta
aactttttaagtttcaaatgttcttcaaatttttcctcttttttctatat
ttttgtcTGTCTTCGAGTCCgcaaagctttttaaaaatattctcaacttg
ttcttaatattttggccatcgaagccttatgttcttatagtttgttccTA
TGAAACAACGTGTACCATTTAATCTCTGCATTAGTTTTGAAGACTCCCCA
ACTGGTCATCTTAATCATACTTCTGGCAAAATGAAGATACTAAAGCAATC
ATAGGCTTTCACTGTTCCTCATCCGGGGCTAAAATGTTAACAATTTTGAC
GTGTATAGTATATATCTTTTTCGCTCTTTCAGTCATTCCATACATTGCAT
GTAGTTATGTGgatttgaatttgttttgtgGAGATTACAATAATGGGCTC
ATTGATGTTGCTTGTCTTGAAAGGATTGGTGACACTCAACACATGAAAAC
GTTGATCTACAATGGACGAAATGATATCGATTGGAATAATTACGGAGCGT
CTGTTGAAAAGTATGATCACTTTGTACTTATTTATACTCTATGTTTTAtt
caaattatcaattttaaCACTTTGAAGATTATTTCAAGATAAGATCCAAG
GTTCTGCACCCCGTCACTGATCCACTGAGTTGCACTAGTGTATGTGAATT
ATCTTCAAAAAATGACATCATCCCTTGTTTGTCATTCGGTTAAGGATTTC
TGTAAAAGTAATTCTACAGTTTGCACCGAATGgccttttaaataattttg
tttttctgcCATTATAGAATCTTATGCAAATGTAAAAAGCTTGCGCAAGA
TTCTGAAAAACAATATTTGAGTTTTGGAATCCAATTTTACGGTGAATGTT
GGGCCAGTGAATATTCAGTTGAAGACCTCTTGAAGAAAGTTCCAACGTCC
AACAAATGCGTCAACGGAACGTACAAAGAATGTCAACCACAGAATTTTCA
TCGTAAAGTAGAGGGACTAAATGGAGGAGAAATTACTATCCAATCACAAG
CTTGTGCTGGTACTGATGTCTCAACTTCGCTATACACTTATTGTGAGTAT
TGTATTGTTGTTGTTAGCGCTCAGACGTATGACATTTATTTCAAAACGCA
AGATAAACTAGTTGTCATCAGTGCAAATTCTTTATAACCTTTGAGGTTAT
TTTATATTAACTTCTTTTTTGTCAAAACGCCTTGAAACAatcgaatttgg
ccaaaaatctaaaaattttaacaacCTATGACATTGGATTTTATTTCATA
GCTTCCACAATcctggccataatatttgagacNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNcattcattcattcattcattcattcatattcATTTACTTTAAGA
TTATCTACGAGAAGTGGAAATCGAGACTCCAGATATTGGTAAAGAGACAG
AGTGGACCTCATGGACAACATGTACTAAAAGTTGTGGTAAAGGATATCAA
GAAAGAACACGAACAGCTTGTGAAATGGTCTCTGGTGTTCGCAGATGCGA
TGTCCTGAAAGAAGAGATGAGAGAATGCAACAAGCATGCATGTGGTTAGC
ATTTCTTCACTACTCTTACCCTCATTTTTTTAATAGAGACCTCGAGCTCG
AATTTGATACTGTCAAATTGGTCATCGCCAAAGATGAGTTATTCAGTTAT
TCAGAATCTGTTCTATCCAAATCTTTTTGACACCCTTTGTTAATTTTATG
TGGTGAATTCGAATCACAAGTCAGTGAAAACAACACTTTATACGTACAGA
TATGTTTAATACGAAATGGGCTAGGAAAAGTAATAAATAAACAACCTAGA
ATGTTTTTTGAATTCAAACTAATATTTCTTATTTagaagaagagaaagaa
gaattTCGACCAATCAACGGAAAATTTAGGGAATGGTCAAACTGGTCTCC
ATGCGTTTGTGGAAATACAGCTCCTTCAATTAGAACAAGAAAATGTGACA
ATCCAAAACCTCAAAATTCTGGCAGAAATTGTGTCGGTGAACCTTTCCAA
ATGAGACCATGCTTCAAGATGAACTGCTGGTAAGAAGAGCTCGGTTATTT
TTTTCGCTATAGAAGAttcaagtttttaatttttagacgTCGTCACAAAA
TGATGCAGAATTGAAGGTTTTTTTTGCTAATATGTAAATTTAAATAGCCT
GTCACTAAACTCGACCTTGTTACCCTTGAGTTTGTATTGAGGAATCAATT
ACAGAGACAAGTTTTGGAATTTATGTGAAATATTtgctcttttctttttt
ctagagAGCCAAGAGATGTAACCAAAGGAAAGTAAGAAGATGAATTTTTC
GTATTTTGATTAAAATCAATCCATTTGTAAATTTATTCGTTAATTAGAAC
AATATCGTTCAACAAACTAAAAATTTCAGGCTTATTTTCATGGTTCCCTA
TAACCATTTAAACTAGCACCACTATTTTTACAACAAACCAGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067437TCONS_00067437Clytia hemisphaericatranscript
TCONS_00067438TCONS_00067438Clytia hemisphaericatranscript
TCONS_00067439TCONS_00067439Clytia hemisphaericatranscript
TCONS_00067440TCONS_00067440Clytia hemisphaericatranscript
TCONS_00067441TCONS_00067441Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067439-proteinTCONS_00067439-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:139752..147694 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88	1.84	0.95	1.1	1.07	1.54	0.65	0.75	2.67	0.73	2.48	8.58	50.09	36.21	1.76	1.46	22.92	29.5	227.29	276.66	124.07	117.12	48.57	87.77	61.01	69.86	0.33	0.12	0.45	0.3