TCONS_00067435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067435
Unique NameTCONS_00067435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067435 ID=TCONS_00067435|Name=TCONS_00067435|organism=Clytia hemisphaerica|type=transcript|length=2786bp
CACGACGGTTGTTTCATGCTGTTTGGTTTAGAAAGGCAGAAGGGCCATTC
CACAATTTCCAGTGTGGAATTGGTGCAAATGCCACGCCGAAGGCGTAAAG
ACAATATTGAATTCCTACGCCGTaggtgaaaatgtttttataatttaaat
ttGTTACTTTCAATATAAAAGAGATCAAAGAAGAATGGCTAAACAAACGC
TGTATAGCCCTTTATGGGAGGGGGAATATTTATGGCTCAAAGAATGCTCT
GATGATTTATATTTTGGAACTTGCAAGGGTTTACAAGCTCCACTGCCAAA
GTATCAAACTCAATGATTGATGCTAAAAGAATGATAAAGGACACTGTCCA
ATGTTTTGGGTCGTCAGTAAATGTTCCTATAACCAAAAGCCTGATAGAGA
CAGTGAAACAAGCAAAACAGAAATGTGATGATCATAGTACAAAAAAAGAT
GCTTCAGCTGTTTCGAAgtctgaagaagaaaatgaggaGGACTCGAAAGT
TATAGAATTGGATAATATAAACACTAAACTAAAGCAGATTATTCATGGAC
TGCAGGTAGCTGATGATATCATGGAAAAAAGTAATGAAGATGTGAGATCT
TGTATGTCTGAAGAGAAAAGCAAGAAACGAAAACAGACTTTGAAGAGGTC
AAAAGCTAGATTTATTGCCAGtgtgaaaagaaagaaacagtTGAGTGACG
ACTTGGAAAGCCTTTCAAAGAAGATTGAGGAACTTAAATATCAGTATTAA
AGATGGAATTAATTATGCTTGTTCTAATGGTTTTAGAATTCGTTTACTTT
GTTACTCACTGATCTTGGTCTTTTTATATGAGATCATTTTTGTGTCAATT
GTTCgtcgttttttttattattatacagTACAATAAAGATCTATAAAAAC
ATGCAAAATGTATTATTATTTTGGAagtttatgaaaatttcttaATGAAA
AGTCTTCGGTATTTCAATCAGGAATATTTCTTATAACAATTACATtatat
taaaatcttttttattatgaacaaagaattaaaaaaaaaagaaaaaaaga
tgagTTTCCGTGGACGTGGTGGCGGCCGTGGTGGACGTGGAGGAAGAGGC
GGAGGCCGTGGCGGTCGAGGTGGTTTTCGACAACAAGACTATGGACCTCC
TGAAACTGTCACAGAAATTGGTCATCTTTTACATCCATGTGAAGGTGATA
TGGTGTTGAAGTGTACGAACGAAAACGTTCCTTACTTCAACGCCCCAATC
TTCCttgaaaacaaacaacaaattgGCAAAGTCGATGAGATTTTTGGTCC
CATAACTGAGTTCTATTTCTCTGTCAAAATTTCTGATGGTATGAATGCTG
ATTCattcaaaaaattacaaaagttTTTCATTGACCCAATGAAGCTTTTA
CCTTTAAGTAGGTTCTTATCAAGGAATACCAGAGGTGGCGGCAGAGGTCG
TGGAGGCCGTGGTGGTCGTGGAGGCGGCAGAGGTGGAGGTCGCGGTGGAG
GTAGAGGTGGATTCACACCAAGAGGAAGAGGAGGCCGAGGCGGTGGTGGT
TTCCGTGGCGGAAGAGGCGGTGGCGGCTTCAGAGGAGGTCGAGGACGAGG
AAGGTTTTAAGGATATATCAAGGATCAATTTTGTACATAGAATTTTTGCA
GAAGAAGTGCGTATGTTGTAAAGGGGTATAGGTTACTCAAGCCATCACGT
TTGGAATCAGTCTATGTGGAAACGCCCTTCTCTGAATTGTAATGTCAGTG
AGAATAAGCAAAGACTCCATGTATCTGCTAAAGCGGAATTAATGTTTTAA
GAACAATGTGGGTGGCGTGAAATGGTTTATGAAATATAGCAATATGAGta
ttgtataattttttaaagaCAAAGGAGGAAGTTGGTATCGGGCCAAATAA
TATTTTCacaatgatttttcaaaaatgaaatttgtttttaacttgttttt
ttcCTCCTGTTGCTTTATTTTTATCTCTTTTtatcgaaatattttttatg
cCAGATAGAAGAgaatattttcacaattttatcattttgtgttttatcag
gttttataagaaaaacgaAGATTAACTAGTACGCGAAATATTCATTTGAT
TTTTCCGTTCTTATTTTACAAATTCtccatttcaaaaatatttacaaaaa
acattgaattataaaattattttaactatGCACCTAGGGTTTTCTTGGAA
GTATCGAATCTTCTAATTAGCAAGGACTCTGTAATCTTTGTACGAATTTT
CGTCTTTTATTCTCGATGCACTTTTCGATTAATGTCTCTTAAAAATTAAC
GCTGCTATATACGAATGTCATGTTTTGTTGTTTCAGCAAAGTTATTTAAT
ATTAACCAACATAAAAGTGACCTTTAAATCAAAGATGGAATTGAAAAGCT
AAAGCGATGCAATGTTGCACGCCAACAACCTGATGAACGCATGAGTGAAC
ATTTGTCCTTGAATTTGGCTTGGTTCAAACTCCTCGAATTATCTTGCACC
ATGtttaaaatggtaatatttttCTCTTAACCCATAGGTGTACTTCTCCT
ACGAGTAGTCATTCGTCGTGTGGTTCCCATACGTGGGGTTGTCATTCTCC
TAGTTGTACCCATTGGCATCCCTGTCGGTCCAGGGGCTCCTGCAGGTCCA
GCAGCCCCTGCAGGTGCGAAGTATTTTACTTCACGTCCGTTTGCAGGTTG
AATTGGTCTGAAATTTCCACACAGTGGCTGTTGACCAGCACCCATCACTG
AGCTGAATTTATTGACCTAAGGGAAAGTCAATTTAG
Run BLAST on NCBI

protein sequence of TCONS_00067435-protein

>TCONS_00067435-protein ID=TCONS_00067435-protein|Name=TCONS_00067435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MNKELKKKEKKMSFRGRGGGRGGRGGRGGGRGGRGGFRQQDYGPPETVTE
IGHLLHPCEGDMVLKCTNENVPYFNAPIFLENKQQIGKVDEIFGPITEFY
FSVKISDGMNADSFKKLQKFFIDPMKLLPLSRFLSRNTRGGGRGRGGRGG
RGGGRGGGRGGGRGGFTPRGRGGRGGGGFRGGRGGGGFRGGRGRGRF
Run BLAST on NCBI

transcript from alignment at scaffold_47:127855..131871+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067435 ID=TCONS_00067435|Name=TCONS_00067435|organism=Clytia hemisphaerica|type=transcript|length=4017bp|location=Sequence derived from alignment at scaffold_47:127855..131871+ (Clytia hemisphaerica)
CACGACGGTTGTTTCATGCTGTTTGGTTTAGAAAGGCAGAAGGGCCATTC
CACAATTTCCAGTGTGGAATTGGTGCAAATGCCACGCCGAAGGCGTAAAG
ACAATATTGAATTCCTACGCCGTaggtgaaaatgtttttataatttaaat
ttGTTACTTTCAATATAAAAGAGATCAAAGAAGAATGGCTAAACAAACGC
TGTATAGCCCTTTATGGGAGGGGGAATATTTATGGCTCAAAGAATGCTCT
GATGATTTATATTTTGGAACTTGCAAGGTTTGTGAAGTAAACTTTTCAGT
ATTATATGGCTTAAGTTCGATTGAGCAGCATGAGAAGTCAAAATCACACC
AAGATACTCTTTCAGATGCTGTAACCAATGCTGAAATAATGTGGGCTTTG
CTATACATAGATGCAGATCTTTCTTTTGATGATAACTTTGGTGTTTCGAT
GTgtaatgtgttttctgactctGAAATTGCTAAACATCTAGCAAAAGACC
TTACTCCTtataaaatgaaatatattgTCCAGTATGGCATTGCTCATTAT
TTTGAAGGGTTTACAAGCTCCACTGCCAAAGTATCAAACTCAATGATTGA
TGCTAAAAGAATGATAAAGGACACTGTCCAATGTTTTGGGTCGTCAGTAA
ATGTTCCTATAACCAAAAGCCTGATAGAGACAGTGAAACAAGCAAAACAG
AAATGTGATGATCATAGTACAAAAAAAGATGCTTCAGCTGTTTCGAAgtc
tgaagaagaaaatgaggaGGACTCGAAAGTTATAGAATTGGATAATATAA
ACACTAAACTAAAGCAGATTATTCATGGACTGCAGGTAGCTGATGATATC
ATGGAAAAAAGTAATGAAGATGTGAGATCTTGTATGTCTGAAGAGAAAAG
CAAGAAACGAAAACAGACTTTGAAGAGGTCAAAAGCTAGATTTATTGCCA
GtgtgaaaagaaagaaacagtTGAGTGACGACTTGGAAAGCCTTTCAAAG
AAGATTGAGGAACTTAAATATCAGTATTAAAGATGGAATTAATTATGCTT
GTTCTAATGGTTTTAGAATTCGTTTACTTTGTTACTCACTGATCTTGGTC
TTTTTATATGAGATCATTTTTGTGTCAATTGTTCgtcgttttttttatta
ttatacagTACAATAAAGATCTATAAAAACATGCAAAATGTATTATTATT
TTGGAagtttatgaaaatttcttaATGAAAAGTCTTCGGTATTTCAATCA
GGAATATTTCTTATAACAATTACATtatattaaaatcttttttattatga
acaaagaattaaaaaaaaaagaaaaaaagatgagTTTCCGTGGACGTGGT
GGCGGCCGTGGTGGACGTGGAGGAAGAGGCGGAGGCCGTGGCGGTCGAGG
TGGTTTTCGACAACAAGACTATGGACCTCCTGAAACTGTCACAGGTATAT
TATTTATTGTAACTATCAGCTGCAAAGTTTTATCCGTGCAAGCTTTAATT
TAAGATGTAATTTTATTCTGTTGTGGTAAGAAACTTTTATAAGATTTGTG
GTCCTACTTTTGCAGACTTCGctctttttacaaaatattactAGAAATAT
TAACCAAGAATATCTGTCATTCCCCTCTAGAAATTGGTCATCTTTTACAT
CCATGTGAAGGTGATATGGTGTTGAAGTGTACGAACGAAAACGTTCCTTA
CTTCAACGCCCCAATCTTCCttgaaaacaaacaacaaattgGCAAAGTCG
ATGAGATTTTTGGTCCCATAACTGAGTTCTATTTCTCTGTCAAAATTTCT
GATGGTATGAATGCTGATTCattcaaaaaattacaaaaggtTTGTACGGA
CAACTACTAAACATTTTTTAGAATTATTAAAAGATATTGATGCATTTGCt
ttctattttgtttatttttatacgAGGACAGTACTCCTAACGTAGGGCTT
TAGCTTAGATTGTAGGTAAAGCTTTATAATCTTAAAAACGTGATTGTagc
aattctttttttttctcattttagttTTTCATTGACCCAATGAAGCTTTT
ACCTTTAAGTAGGTTCTTATCAAGGAATACCAGAGGTAAGTTTATTTTCT
TCCTTTACAAATCCTGAACAAATTATtagaaaattatattatttagaaga
tgaaaacaaaaagacTGAATTTGCAGATCAAGTCATTAGATATCTTTTAG
CACtacagtcgactctctctaattcgacgttctacttttCGAtatgctcc
attattcgataatattgaaagtcactgcCAACAAGAAACTTTCATAAACG
ACATTCTACTATTTATTCTACGCCCCCTTATTCGGTAAGAATCCAATTTT
CATTGGAAATCgatttagagagcgtcaactgtattccaAAGAAAGTTTGT
TCATCAAGccgtcaaattgtttttttatgattaaACTTTAATCCttactt
taattttttctcGCACCTTAGGTGGCGGCAGAGGTCGTGGAGGCCGTGGT
GGTCGTGGAGGCGGCAGAGGTGGAGGTCGCGGTGGAGGTAGAGGTGGATT
CACACCAAGAGGAAGAGGAGGCCGAGGCGGTGGTGGTTTCCGTGGCGGAA
GAGGCGGTGGCGGCTTCAGAGGAGGTATGTTTTCTTCTTTATACTGAGTA
ATGTTTCTTTACTTGCTCGTTTTTGACCCAAAAGACAacgaatttttttc
actattctttttggttttaataagtgcactttatagtttagattcccatt
gaagaatcatattctggttttcatgttaatataatttttttaattgatta
aaatttccttttttgtaGGTCGAGGACGAGGAAGGTTTTAAGGATATATC
AAGGATCAATTTTGTACATAGAATTTTTGCAGAAGAAGTGCGTATGTTGT
AAAGGGGTATAGGTTACTCAAGCCATCACGTTTGGAATCAGTCTATGTGG
AAACGCCCTTCTCTGAATTGTAATGTCAGTGAGAATAAGCAAAGACTCCA
TGTATCTGCTAAAGCGGAATTAATGTTTTAAGAACAATGTGGGTGGCGTG
AAATGGTTTATGAAATATAGCAATATGAGtattgtataattttttaaaga
CAAAGGAGGAAGTTGGTATCGGGCCAAATAATATTTTCacaatgattttt
caaaaatgaaatttgtttttaacttgtttttttcCTCCTGTTGCTTTATT
TTTATCTCTTTTtatcgaaatattttttatgcCAGATAGAAGAgaatatt
ttcacaattttatcattttgtgttttatcaggttttataagaaaaacgaA
GATTAACTAGTACGCGAAATATTCATTTGATTTTTCCGTTCTTATTTTAC
AAATTCtccatttcaaaaatatttacaaaaaacattgaattataaaatta
ttttaactatGCACCTAGGGTTTTCTTGGAAGTATCGAATCTTCTAATTA
GCAAGGACTCTGTAATCTTTGTACGAATTTTCGTCTTTTATTCTCGATGC
ACTTTTCGATTAATGTCTCTTAAAAATTAACGCTGCTATATACGAATGTC
ATGTTTTGTTGTTTCAGCAAAGTTATTTAATATTAACCAACATAAAAGTG
ACCTTTAAATCAAAGATGGAATTGAAAAGCTAAAGCGATGCAATGTTGCA
CGCCAACAACCTGATGAACGCATGAGTGAACATTTGTCCTTGAATTTGGC
TTGGTTCAAACTCCTCGAATTATCTTGCACCATGtttaaaatggtaatat
ttttCTCTTAACCCATAGGTGTACTTCTCCTACGAGTAGTCATTCGTCGT
GTGGTTCCCATACGTGGGGTTGTCATTCTCCTAGTTGTACCCATTGGCAT
CCCTGTCGGTCCAGGGGCTCCTGCAGGTCCAGCAGCCCCTGCAGGTGCGA
AGTATTTTACTTCACGTCCGTTTGCAGGTTGAATTGGTCTGAAATTTCCA
CACAGTGGCTGTTGACCAGCACCCATCACTGAGCTGAATTTATTGACCTA
AGGGAAAGTCAATTTAG

Coding sequence (CDS) from alignment at scaffold_47:127855..131871+

>TCONS_00067435 ID=TCONS_00067435|Name=TCONS_00067435|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_47:127855..131871+ (Clytia hemisphaerica)
atgaacaaagaattaaaaaaaaaagaaaaaaagatgagTTTCCGTGGACG
TGGTGGCGGCCGTGGTGGACGTGGAGGAAGAGGCGGAGGCCGTGGCGGTC
GAGGTGGTTTTCGACAACAAGACTATGGACCTCCTGAAACTGTCACAGAA
ATTGGTCATCTTTTACATCCATGTGAAGGTGATATGGTGTTGAAGTGTAC
GAACGAAAACGTTCCTTACTTCAACGCCCCAATCTTCCttgaaaacaaac
aacaaattgGCAAAGTCGATGAGATTTTTGGTCCCATAACTGAGTTCTAT
TTCTCTGTCAAAATTTCTGATGGTATGAATGCTGATTCattcaaaaaatt
acaaaagttTTTCATTGACCCAATGAAGCTTTTACCTTTAAGTAGGTTCT
TATCAAGGAATACCAGAGGTGGCGGCAGAGGTCGTGGAGGCCGTGGTGGT
CGTGGAGGCGGCAGAGGTGGAGGTCGCGGTGGAGGTAGAGGTGGATTCAC
ACCAAGAGGAAGAGGAGGCCGAGGCGGTGGTGGTTTCCGTGGCGGAAGAG
GCGGTGGCGGCTTCAGAGGAGGTCGAGGACGAGGAAGGTTTTAAatgaac
aaagaattaaaaaaaaaagaaaaaaagatgagTTTCCGTGGACGTGGTGG
CGGCCGTGGTGGACGTGGAGGAAGAGGCGGAGGCCGTGGCGGTCGAGGTG
GTTTTCGACAACAAGACTATGGACCTCCTGAAACTGTCACAGAAATTGGT
CATCTTTTACATCCATGTGAAGGTGATATGGTGTTGAAGTGTACGAACGA
AAACGTTCCTTACTTCAACGCCCCAATCTTCCttgaaaacaaacaacaaa
ttgGCAAAGTCGATGAGATTTTTGGTCCCATAACTGAGTTCTATTTCTCT
GTCAAAATTTCTGATGGTATGAATGCTGATTCattcaaaaaattacaaaa
gttTTTCATTGACCCAATGAAGCTTTTACCTTTAAGTAGGTTCTTATCAA
GGAATACCAGAGGTGGCGGCAGAGGTCGTGGAGGCCGTGGTGGTCGTGGA
GGCGGCAGAGGTGGAGGTCGCGGTGGAGGTAGAGGTGGATTCACACCAAG
AGGAAGAGGAGGCCGAGGCGGTGGTGGTTTCCGTGGCGGAAGAGGCGGTG
GCGGCTTCAGAGGAGGTCGAGGACGAGGAAGGTTTTAAatgaacaaagaa
ttaaaaaaaaaagaaaaaaagatgagTTTCCGTGGACGTGGTGGCGGCCG
TGGTGGACGTGGAGGAAGAGGCGGAGGCCGTGGCGGTCGAGGTGGTTTTC
GACAACAAGACTATGGACCTCCTGAAACTGTCACAGAAATTGGTCATCTT
TTACATCCATGTGAAGGTGATATGGTGTTGAAGTGTACGAACGAAAACGT
TCCTTACTTCAACGCCCCAATCTTCCttgaaaacaaacaacaaattgGCA
AAGTCGATGAGATTTTTGGTCCCATAACTGAGTTCTATTTCTCTGTCAAA
ATTTCTGATGGTATGAATGCTGATTCattcaaaaaattacaaaagttTTT
CATTGACCCAATGAAGCTTTTACCTTTAAGTAGGTTCTTATCAAGGAATA
CCAGAGGTGGCGGCAGAGGTCGTGGAGGCCGTGGTGGTCGTGGAGGCGGC
AGAGGTGGAGGTCGCGGTGGAGGTAGAGGTGGATTCACACCAAGAGGAAG
AGGAGGCCGAGGCGGTGGTGGTTTCCGTGGCGGAAGAGGCGGTGGCGGCT
TCAGAGGAGGTCGAGGACGAGGAAGGTTTTAAatgaacaaagaattaaaa
aaaaaagaaaaaaagatgagTTTCCGTGGACGTGGTGGCGGCCGTGGTGG
ACGTGGAGGAAGAGGCGGAGGCCGTGGCGGTCGAGGTGGTTTTCGACAAC
AAGACTATGGACCTCCTGAAACTGTCACAGAAATTGGTCATCTTTTACAT
CCATGTGAAGGTGATATGGTGTTGAAGTGTACGAACGAAAACGTTCCTTA
CTTCAACGCCCCAATCTTCCttgaaaacaaacaacaaattgGCAAAGTCG
ATGAGATTTTTGGTCCCATAACTGAGTTCTATTTCTCTGTCAAAATTTCT
GATGGTATGAATGCTGATTCattcaaaaaattacaaaagttTTTCATTGA
CCCAATGAAGCTTTTACCTTTAAGTAGGTTCTTATCAAGGAATACCAGAG
GTGGCGGCAGAGGTCGTGGAGGCCGTGGTGGTCGTGGAGGCGGCAGAGGT
GGAGGTCGCGGTGGAGGTAGAGGTGGATTCACACCAAGAGGAAGAGGAGG
CCGAGGCGGTGGTGGTTTCCGTGGCGGAAGAGGCGGTGGCGGCTTCAGAG
GAGGTCGAGGACGAGGAAGGTTTTAAatgaacaaagaattaaaaaaaaaa
gaaaaaaagatgagTTTCCGTGGACGTGGTGGCGGCCGTGGTGGACGTGG
AGGAAGAGGCGGAGGCCGTGGCGGTCGAGGTGGTTTTCGACAACAAGACT
ATGGACCTCCTGAAACTGTCACAGAAATTGGTCATCTTTTACATCCATGT
GAAGGTGATATGGTGTTGAAGTGTACGAACGAAAACGTTCCTTACTTCAA
CGCCCCAATCTTCCttgaaaacaaacaacaaattgGCAAAGTCGATGAGA
TTTTTGGTCCCATAACTGAGTTCTATTTCTCTGTCAAAATTTCTGATGGT
ATGAATGCTGATTCattcaaaaaattacaaaagttTTTCATTGACCCAAT
GAAGCTTTTACCTTTAAGTAGGTTCTTATCAAGGAATACCAGAGGTGGCG
GCAGAGGTCGTGGAGGCCGTGGTGGTCGTGGAGGCGGCAGAGGTGGAGGT
CGCGGTGGAGGTAGAGGTGGATTCACACCAAGAGGAAGAGGAGGCCGAGG
CGGTGGTGGTTTCCGTGGCGGAAGAGGCGGTGGCGGCTTCAGAGGAGGTC
GAGGACGAGGAAGGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042124XLOC_042124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067435-exon-scaffold_47-1491911889:127855..128131TCONS_00067435-exon-scaffold_47-1491911889:127855..128131Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1510915933:127855..128131TCONS_00067435-exon-scaffold_47-1510915933:127855..128131Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1575043694:127855..128131TCONS_00067435-exon-scaffold_47-1575043694:127855..128131Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1491911889:128412..129298TCONS_00067435-exon-scaffold_47-1491911889:128412..129298Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1510915933:128412..129298TCONS_00067435-exon-scaffold_47-1510915933:128412..129298Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1575043694:128412..129298TCONS_00067435-exon-scaffold_47-1575043694:128412..129298Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1491911889:129485..129693TCONS_00067435-exon-scaffold_47-1491911889:129485..129693Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1510915933:129485..129693TCONS_00067435-exon-scaffold_47-1510915933:129485..129693Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1575043694:129485..129693TCONS_00067435-exon-scaffold_47-1575043694:129485..129693Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1491911889:129879..129939TCONS_00067435-exon-scaffold_47-1491911889:129879..129939Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1510915933:129879..129939TCONS_00067435-exon-scaffold_47-1510915933:129879..129939Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1575043694:129879..129939TCONS_00067435-exon-scaffold_47-1575043694:129879..129939Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1491911889:130326..130478TCONS_00067435-exon-scaffold_47-1491911889:130326..130478Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1510915933:130326..130478TCONS_00067435-exon-scaffold_47-1510915933:130326..130478Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1575043694:130326..130478TCONS_00067435-exon-scaffold_47-1575043694:130326..130478Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1491911889:130673..131871TCONS_00067435-exon-scaffold_47-1491911889:130673..131871Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1510915933:130673..131871TCONS_00067435-exon-scaffold_47-1510915933:130673..131871Clytia hemisphaericaexon
TCONS_00067435-exon-scaffold_47-1575043694:130673..131871TCONS_00067435-exon-scaffold_47-1575043694:130673..131871Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067435-proteinTCONS_00067435-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:127855..131871 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	7.7033	10.5669	135.488	104.742	80.2574	83.5624	35.6034	45.6246	27.04	33.747	26.8823	25.2009	34.5258	41.8295	50.9305	44.3177	1.80583	3.2453	43.8233	45.5558	7.1487	5.76554	31.1996	42.3537	24.6809	15.3876	14.563	10.7236
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR021154H/ACA_rnp_Gar1
IPR009000Transl_B-barrel
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0001522pseudouridine synthesis
Vocabulary: Cellular Component
TermDefinition
GO:0031429box H/ACA snoRNP complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0031429 box H/ACA snoRNP complex
Blast
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BLAST of TCONS_00067435 vs. Swiss-Prot (Human)
Match: GAR1 (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.809e-37
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 3 
Query: 1128 RQQDYGPPETVTEIGHLLHPCEGDMVLKCTNE--NVPYFNAPIFLENKQQIGKVDEIFGPITEFYFSVKISDGMNADSFKKLQKFFIDPMKLLPLSRFLSR 1424
            + QD GPPE V  +G  LHPCE D+V KCT +   VPYFNAP++LENK+QIGKVDEIFG + +FYFSVK+S+ M A SFKKLQKF+IDP KLLPL RFL R
Sbjct:   60 KGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPR 160
The following BLAST results are available for this feature:
BLAST of TCONS_00067435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAR11.809e-3767.33H/ACA ribonucleoprotein complex subunit 1 OS=Homo ... [more]
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