TCONS_00067434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067434
Unique NameTCONS_00067434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067434 ID=TCONS_00067434|Name=TCONS_00067434|organism=Clytia hemisphaerica|type=transcript|length=3122bp
gcctggggcctaaacccaggctgacgctatgatCCAGTCTCACACACACA
CGACTACACGACGGTTGTTTCATGCTGTTTGGTTTAGAAAGGCAGAAGGG
CCATTCCACAATTTCCAGTGTGGAATTGGTGCAAATGCCACGCCGAAGGC
GTAAAGACAATATTGAATTCCTACGCCGTaggtgaaaatgtttttataat
ttaaatttGTTACTTTCAATATAAAAGAGATCAAAGAAGAATGGCTAAAC
AAACGCTGTATAGCCCTTTATGGGAGGGGGAATATTTATGGCTCAAAGAA
TGCTCTGATGATTTATATTTTGGAACTTGCAAGGTTTGTGAAGTAAACTT
TTCAGTATTATATGGCTTAAGTTCGATTGAGCAGCATGAGAAGTCAAAAT
CACACCAAGATACTCTTTCAGATGCTGTAACCAATGCTGAAATAATGTGG
GCTTTGCTATACATAGATGCAGATCTTTCTTTTGATGATAACTTTGGTGT
TTCGATGTgtaatgtgttttctgactctGAAATTGCTAAACATCTAGCAA
AAGACCTTACTCCTtataaaatgaaatatattgTCCAGTATGGCATTGCT
CATTATTTTGAAGGGTTTACAAGCTCCACTGCCAAAGTATCAAACTCAAT
GATTGATGCTAAAAGAATGATAAAGGACACTGTCCAATGTTTTGGGTCGT
CAGTAAATGTTCCTATAACCAAAAGCCTGATAGAGACAGTGAAACAAGCA
AAACAGAAATGTGATGATCATAGTACAAAAAAAGATGCTTCAGCTGTTTC
GAAgtctgaagaagaaaatgaggaGGACTCGAAAGTTATAGAATTGGATA
ATATAAACACTAAACTAAAGCAGATTATTCATGGACTGCAGGTAGCTGAT
GATATCATGGAAAAAAGTAATGAAGATGTGAGATCTTGTATGTCTGAAGA
GAAAAGCAAGAAACGAAAACAGACTTTGAAGAGGTCAAAAGCTAGATTTA
TTGCCAGtgtgaaaagaaagaaacagtTGAGTGACGACTTGGAAAGCCTT
TCAAAGAAGATTGAGGAACTTAAATATCAGTATTAAAGATGGAATTAATT
ATGCTTGTTCTAATGGTTTTAGAATTCGTTTACTTTGTTACTCACTGATC
TTGGTCTTTTTATATGAGATCATTTTTGTGTCAATTGTTCgtcgtttttt
ttattattatacagTACAATAAAGATCTATAAAAACATGCAAAATGTATT
ATTATTTTGGAagtttatgaaaatttcttaATGAAAAGTCTTCGGTATTT
CAATCAGGAATATTTCTTATAACAATTACATtatattaaaatctttttta
ttatgaacaaagaattaaaaaaaaaagaaaaaaagatgagTTTCCGTGGA
CGTGGTGGCGGCCGTGGTGGACGTGGAGGAAGAGGCGGAGGCCGTGGCGG
TCGAGGTGGTTTTCGACAACAAGACTATGGACCTCCTGAAACTGTCACAG
AAATTGGTCATCTTTTACATCCATGTGAAGGTGATATGGTGTTGAAGTGT
ACGAACGAAAACGTTCCTTACTTCAACGCCCCAATCTTCCttgaaaacaa
acaacaaattgGCAAAGTCGATGAGATTTTTGGTCCCATAACTGAGTTCT
ATTTCTCTGTCAAAATTTCTGATGGTATGAATGCTGATTCattcaaaaaa
ttacaaaagttTTTCATTGACCCAATGAAGCTTTTACCTTTAAGTAGGTT
CTTATCAAGGAATACCAGAGGTGGCGGCAGAGGTCGTGGAGGCCGTGGTG
GTCGTGGAGGCGGCAGAGGTGGAGGTCGCGGTGGAGGTAGAGGTGGATTC
ACACCAAGAGGAAGAGGAGGCCGAGGCGGTGGTGGTTTCCGTGGCGGAAG
AGGCGGTGGCGGCTTCAGAGGAGGTCGAGGACGAGGAAGGTTTTAAGGAT
ATATCAAGGATCAATTTTGTACATAGAATTTTTGCAGAAGAAGTGCGTAT
GTTGTAAAGGGGTATAGGTTACTCAAGCCATCACGTTTGGAATCAGTCTA
TGTGGAAACGCCCTTCTCTGAATTGTAATGTCAGTGAGAATAAGCAAAGA
CTCCATGTATCTGCTAAAGCGGAATTAATGTTTTAAGAACAATGTGGGTG
GCGTGAAATGGTTTATGAAATATAGCAATATGAGtattgtataatttttt
aaagaCAAAGGAGGAAGTTGGTATCGGGCCAAATAATATTTTCacaatga
tttttcaaaaatgaaatttgtttttaacttgtttttttcCTCCTGTTGCT
TTATTTTTATCTCTTTTtatcgaaatattttttatgcCAGATAGAAGAga
atattttcacaattttatcattttgtgttttatcaggttttataagaaaa
acgaAGATTAACTAGTACGCGAAATATTCATTTGATTTTTCCGTTCTTAT
TTTACAAATTCtccatttcaaaaatatttacaaaaaacattgaattataa
aattattttaactatGCACCTAGGGTTTTCTTGGAAGTATCGAATCTTCT
AATTAGCAAGGACTCTGTAATCTTTGTACGAATTTTCGTCTTTTATTCTC
GATGCACTTTTCGATTAATGTCTCTTAAAAATTAACGCTGCTATATACGA
ATGTCATGTTTTGTTGTTTCAGCAAAGTTATTTAATATTAACCAACATAA
AAGTGACCTTTAAATCAAAGATGGAATTGAAAAGCTAAAGCGATGCAATG
TTGCACGCCAACAACCTGATGAACGCATGAGTGAACATTTGTCCTTGAAT
TTGGCTTGGTTCAAACTCCTCGAATTATCTTGCACCATGtttaaaatggt
aatatttttCTCTTAACCCATAGGTGTACTTCTCCTACGAGTAGTCATTC
GTCGTGTGGTTCCCATACGTGGGGTTGTCATTCTCCTAGTTGTACCCATT
GGCATCCCTGTCGGTCCAGGGGCTCCTGCAGGTCCAGCAGCCCCTGCAGG
TGCGAAGTATTTTACTTCACGTCCGTTTGCAGGTTGAATTGGTCTGAAAT
TTCCACACAGTGGCTGTTGACCAGCACCCATCACTGAGCTGAATTTATTG
ACCTAAGGGAAAGTCAATTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_47:127799..131871+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067434 ID=TCONS_00067434|Name=TCONS_00067434|organism=Clytia hemisphaerica|type=transcript|length=4073bp|location=Sequence derived from alignment at scaffold_47:127799..131871+ (Clytia hemisphaerica)
gcctggggcctaaacccaggctgacgctatgatCCAGTCTCACACACACA
CGACTACACGACGGTTGTTTCATGCTGTTTGGTTTAGAAAGGCAGAAGGG
CCATTCCACAATTTCCAGTGTGGAATTGGTGCAAATGCCACGCCGAAGGC
GTAAAGACAATATTGAATTCCTACGCCGTaggtgaaaatgtttttataat
ttaaatttGTTACTTTCAATATAAAAGAGATCAAAGAAGAATGGCTAAAC
AAACGCTGTATAGCCCTTTATGGGAGGGGGAATATTTATGGCTCAAAGAA
TGCTCTGATGATTTATATTTTGGAACTTGCAAGGTTTGTGAAGTAAACTT
TTCAGTATTATATGGCTTAAGTTCGATTGAGCAGCATGAGAAGTCAAAAT
CACACCAAGATACTCTTTCAGATGCTGTAACCAATGCTGAAATAATGTGG
GCTTTGCTATACATAGATGCAGATCTTTCTTTTGATGATAACTTTGGTGT
TTCGATGTgtaatgtgttttctgactctGAAATTGCTAAACATCTAGCAA
AAGACCTTACTCCTtataaaatgaaatatattgTCCAGTATGGCATTGCT
CATTATTTTGAAGGGTTTACAAGCTCCACTGCCAAAGTATCAAACTCAAT
GATTGATGCTAAAAGAATGATAAAGGACACTGTCCAATGTTTTGGGTCGT
CAGTAAATGTTCCTATAACCAAAAGCCTGATAGAGACAGTGAAACAAGCA
AAACAGAAATGTGATGATCATAGTACAAAAAAAGATGCTTCAGCTGTTTC
GAAgtctgaagaagaaaatgaggaGGACTCGAAAGTTATAGAATTGGATA
ATATAAACACTAAACTAAAGCAGATTATTCATGGACTGCAGGTAGCTGAT
GATATCATGGAAAAAAGTAATGAAGATGTGAGATCTTGTATGTCTGAAGA
GAAAAGCAAGAAACGAAAACAGACTTTGAAGAGGTCAAAAGCTAGATTTA
TTGCCAGtgtgaaaagaaagaaacagtTGAGTGACGACTTGGAAAGCCTT
TCAAAGAAGATTGAGGAACTTAAATATCAGTATTAAAGATGGAATTAATT
ATGCTTGTTCTAATGGTTTTAGAATTCGTTTACTTTGTTACTCACTGATC
TTGGTCTTTTTATATGAGATCATTTTTGTGTCAATTGTTCgtcgtttttt
ttattattatacagTACAATAAAGATCTATAAAAACATGCAAAATGTATT
ATTATTTTGGAagtttatgaaaatttcttaATGAAAAGTCTTCGGTATTT
CAATCAGGAATATTTCTTATAACAATTACATtatattaaaatctttttta
ttatgaacaaagaattaaaaaaaaaagaaaaaaagatgagTTTCCGTGGA
CGTGGTGGCGGCCGTGGTGGACGTGGAGGAAGAGGCGGAGGCCGTGGCGG
TCGAGGTGGTTTTCGACAACAAGACTATGGACCTCCTGAAACTGTCACAG
GTATATTATTTATTGTAACTATCAGCTGCAAAGTTTTATCCGTGCAAGCT
TTAATTTAAGATGTAATTTTATTCTGTTGTGGTAAGAAACTTTTATAAGA
TTTGTGGTCCTACTTTTGCAGACTTCGctctttttacaaaatattactAG
AAATATTAACCAAGAATATCTGTCATTCCCCTCTAGAAATTGGTCATCTT
TTACATCCATGTGAAGGTGATATGGTGTTGAAGTGTACGAACGAAAACGT
TCCTTACTTCAACGCCCCAATCTTCCttgaaaacaaacaacaaattgGCA
AAGTCGATGAGATTTTTGGTCCCATAACTGAGTTCTATTTCTCTGTCAAA
ATTTCTGATGGTATGAATGCTGATTCattcaaaaaattacaaaaggtTTG
TACGGACAACTACTAAACATTTTTTAGAATTATTAAAAGATATTGATGCA
TTTGCtttctattttgtttatttttatacgAGGACAGTACTCCTAACGTA
GGGCTTTAGCTTAGATTGTAGGTAAAGCTTTATAATCTTAAAAACGTGAT
TGTagcaattctttttttttctcattttagttTTTCATTGACCCAATGAA
GCTTTTACCTTTAAGTAGGTTCTTATCAAGGAATACCAGAGGTAAGTTTA
TTTTCTTCCTTTACAAATCCTGAACAAATTATtagaaaattatattattt
agaagatgaaaacaaaaagacTGAATTTGCAGATCAAGTCATTAGATATC
TTTTAGCACtacagtcgactctctctaattcgacgttctacttttCGAta
tgctccattattcgataatattgaaagtcactgcCAACAAGAAACTTTCA
TAAACGACATTCTACTATTTATTCTACGCCCCCTTATTCGGTAAGAATCC
AATTTTCATTGGAAATCgatttagagagcgtcaactgtattccaAAGAAA
GTTTGTTCATCAAGccgtcaaattgtttttttatgattaaACTTTAATCC
ttactttaattttttctcGCACCTTAGGTGGCGGCAGAGGTCGTGGAGGC
CGTGGTGGTCGTGGAGGCGGCAGAGGTGGAGGTCGCGGTGGAGGTAGAGG
TGGATTCACACCAAGAGGAAGAGGAGGCCGAGGCGGTGGTGGTTTCCGTG
GCGGAAGAGGCGGTGGCGGCTTCAGAGGAGGTATGTTTTCTTCTTTATAC
TGAGTAATGTTTCTTTACTTGCTCGTTTTTGACCCAAAAGACAacgaatt
tttttcactattctttttggttttaataagtgcactttatagtttagatt
cccattgaagaatcatattctggttttcatgttaatataatttttttaat
tgattaaaatttccttttttgtaGGTCGAGGACGAGGAAGGTTTTAAGGA
TATATCAAGGATCAATTTTGTACATAGAATTTTTGCAGAAGAAGTGCGTA
TGTTGTAAAGGGGTATAGGTTACTCAAGCCATCACGTTTGGAATCAGTCT
ATGTGGAAACGCCCTTCTCTGAATTGTAATGTCAGTGAGAATAAGCAAAG
ACTCCATGTATCTGCTAAAGCGGAATTAATGTTTTAAGAACAATGTGGGT
GGCGTGAAATGGTTTATGAAATATAGCAATATGAGtattgtataattttt
taaagaCAAAGGAGGAAGTTGGTATCGGGCCAAATAATATTTTCacaatg
atttttcaaaaatgaaatttgtttttaacttgtttttttcCTCCTGTTGC
TTTATTTTTATCTCTTTTtatcgaaatattttttatgcCAGATAGAAGAg
aatattttcacaattttatcattttgtgttttatcaggttttataagaaa
aacgaAGATTAACTAGTACGCGAAATATTCATTTGATTTTTCCGTTCTTA
TTTTACAAATTCtccatttcaaaaatatttacaaaaaacattgaattata
aaattattttaactatGCACCTAGGGTTTTCTTGGAAGTATCGAATCTTC
TAATTAGCAAGGACTCTGTAATCTTTGTACGAATTTTCGTCTTTTATTCT
CGATGCACTTTTCGATTAATGTCTCTTAAAAATTAACGCTGCTATATACG
AATGTCATGTTTTGTTGTTTCAGCAAAGTTATTTAATATTAACCAACATA
AAAGTGACCTTTAAATCAAAGATGGAATTGAAAAGCTAAAGCGATGCAAT
GTTGCACGCCAACAACCTGATGAACGCATGAGTGAACATTTGTCCTTGAA
TTTGGCTTGGTTCAAACTCCTCGAATTATCTTGCACCATGtttaaaatgg
taatatttttCTCTTAACCCATAGGTGTACTTCTCCTACGAGTAGTCATT
CGTCGTGTGGTTCCCATACGTGGGGTTGTCATTCTCCTAGTTGTACCCAT
TGGCATCCCTGTCGGTCCAGGGGCTCCTGCAGGTCCAGCAGCCCCTGCAG
GTGCGAAGTATTTTACTTCACGTCCGTTTGCAGGTTGAATTGGTCTGAAA
TTTCCACACAGTGGCTGTTGACCAGCACCCATCACTGAGCTGAATTTATT
GACCTAAGGGAAAGTCAATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042124XLOC_042124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067434-exon-scaffold_47-1491911889:127799..129298TCONS_00067434-exon-scaffold_47-1491911889:127799..129298Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1510915933:127799..129298TCONS_00067434-exon-scaffold_47-1510915933:127799..129298Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1575043694:127799..129298TCONS_00067434-exon-scaffold_47-1575043694:127799..129298Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1491911889:129485..129693TCONS_00067434-exon-scaffold_47-1491911889:129485..129693Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1510915933:129485..129693TCONS_00067434-exon-scaffold_47-1510915933:129485..129693Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1575043694:129485..129693TCONS_00067434-exon-scaffold_47-1575043694:129485..129693Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1491911889:129879..129939TCONS_00067434-exon-scaffold_47-1491911889:129879..129939Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1510915933:129879..129939TCONS_00067434-exon-scaffold_47-1510915933:129879..129939Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1575043694:129879..129939TCONS_00067434-exon-scaffold_47-1575043694:129879..129939Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1491911889:130326..130478TCONS_00067434-exon-scaffold_47-1491911889:130326..130478Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1510915933:130326..130478TCONS_00067434-exon-scaffold_47-1510915933:130326..130478Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1575043694:130326..130478TCONS_00067434-exon-scaffold_47-1575043694:130326..130478Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1491911889:130673..131871TCONS_00067434-exon-scaffold_47-1491911889:130673..131871Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1510915933:130673..131871TCONS_00067434-exon-scaffold_47-1510915933:130673..131871Clytia hemisphaericaexon
TCONS_00067434-exon-scaffold_47-1575043694:130673..131871TCONS_00067434-exon-scaffold_47-1575043694:130673..131871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:127799..131871 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.3737	31.9246	36.3772	38.2471	7.1196	4.15878	4.61552	6.60858	4.53785	4.07788	2.56741	3.51607	3.37073	4.15689	3.47749	3.15279	5.23148	4.71215	0	0.234908	5.71698	4.03343	52.0759	44.2818	6.57521	6.0561	3.33	3.39935	25.4608	34.3637
Blast
[Close]
BLAST of TCONS_00067434 vs. Swiss-Prot (Human)
Match: GAR1 (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.514e-37
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 3 
Query: 1464 RQQDYGPPETVTEIGHLLHPCEGDMVLKCTNE--NVPYFNAPIFLENKQQIGKVDEIFGPITEFYFSVKISDGMNADSFKKLQKFFIDPMKLLPLSRFLSR 1760
            + QD GPPE V  +G  LHPCE D+V KCT +   VPYFNAP++LENK+QIGKVDEIFG + +FYFSVK+S+ M A SFKKLQKF+IDP KLLPL RFL R
Sbjct:   60 KGQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPR 160
The following BLAST results are available for this feature:
BLAST of TCONS_00067434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAR12.514e-3767.33H/ACA ribonucleoprotein complex subunit 1 OS=Homo ... [more]
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