TCONS_00067432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067432
Unique NameTCONS_00067432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067432 ID=TCONS_00067432|Name=TCONS_00067432|organism=Clytia hemisphaerica|type=transcript|length=895bp
ACAAATCATTCCTTTAACCCAAAGAATTAAATATTATCCTGATAAATGGA
TTTAGAAGCGCCCTTGAAGCATCAGCCAGACTGGGCGGTGAAGGATTGAC
TCCATTTTACACCCTTTTGGAGGGCGGAAGAGAAGGAGAATTATTTTCTG
AATTGGAAGAATATTTCTATTACGCCCAAATGAAACATCAAGGAATTGAC
ACAATGGAAACACGCGAAGTGTCCGGAACTATTCCTCTGTCCGAAATTCC
TTTCGTCGTTCGAGCGCTTGGTTTCTACCCGACCGAACAACAGATAGAGG
AGATGACAAATGAAGTGAAATTTAGTTCTTACGTGGAAACCGGCCATTAC
GTCAATCAAGTCGATCTGGAAGCCCTTATTAAACTATACATCAACCATCG
ACCAGCATTTGGTTTACACCCTGATCAACTAGTGAACGCGTTCGAGAAGA
TCGGATTAATCGGAGAAGAAGGAGATGTTGAAATTCAAAGAAGTGAATTG
CTCGCCATCCTTCAAGACAAAGGCGAACATTTATCGGAAGGAGAATTAGC
CGAATATTTGTCGTCGTTATTCGGCGGAGGAGCGGACACCGAGAATTTTT
CGTTAGAAGATTGTTTACCGGAGAAGATTTCCATTTCCATGTTCGCTAAA
CAATTATTAGGGTTGGAACTCGCTTCTGAGTGATTCTTTGGCTTGATGTA
AACTTTCTTGTtgataaatttaatttctttattATATTGAGAATGAGTAA
AATCTGATTATACCTTTCAACTTCCTAGGATGTGTGTATGGGTAATGCCT
TATTCGGAACTTGAAAAATCCAAACAGAGTTTGAATTctccaaataaaat
ttttcctattgaaataaCTTTTCTATGCCAACCATCAGATTTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_47:65064..68209+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067432 ID=TCONS_00067432|Name=TCONS_00067432|organism=Clytia hemisphaerica|type=transcript|length=3146bp|location=Sequence derived from alignment at scaffold_47:65064..68209+ (Clytia hemisphaerica)
ACAAATCATTCCTTTAACCCAAAGAATTAAATATTATCCTGATAAATGGA
TTTAGAAGGTTTGTTATTATAAATCTTTTATTGCTTTCTATCTCTATTTC
CGCCCGAGAATGAGAATTGGATTAATGCGATTCCTTTTCTTTTAGCGCCC
TTGAAGCATCAGCCAGACTGGGCGGTGAAGGATTGACTCCATTTTACACC
CTTTTGGAGGGCGGAAGAGAAGGAGAATTATTTTCTGAATTGGAAGAATA
TTTCTATTACGCCCAAATGAAACAGTGAGTGTGACCATGGACATGATGTG
ACAGACTTGATCTGTTTACGTCTTCTCTCGGTGCTGAGTAGTACATTTTG
TCATTCTATGCTTTTCTTGACTGTTAATTGGTTCGAGTGTTAAAATCTCG
CAAACTGATGTGATCATCATCTTCAttcgatgttatcgtccgttacagtg
atagtaaagacaggaaaatatggcggtatggcatTAAGTtagtatacgga
aaaaaatcggcggtagagtttcgaagaaacggacgataacTCTTTGGCAT
AAAAGCGGTTTTCCCGTTTTGCTTGGACCAACCAGTGAGACCTGAAATTA
CGTACTTACTGTATTTGGTAGCTTGCAATGTTTTAAGTTTCACATTTTTA
ATACATAATATTTCTAcatgatctttttttttcatcatttcagTCAAGGA
ATTGACACAATGGAAACACGCGAAGTGTCCGGAACTATTCCTCTGTCCGA
AATTCCTTTCGTCGTTCGAGCGCTTGGTTTCTACCCGACCGAACAACAGG
TAAGTGGAAGACAGCTCTGTCATTACATAAATCACAATAATCAAGTTTAG
ACGAATCGAGGATGTCAAAGTGCTCGATGGGTAATCAGAGCCATATAATT
ATCAAGAAAAATTATCTTTCAATCCATCAAACAAAACTAAGAATTTAAAA
ATGAGTACAtaatcggccaaaacttagtcggccttaattattagtcggcc
ctaattttagtcacctcgtcaaaatttagtcactaagggccgactaagcG
GTTATTTTTACagttaatttggcccaaatttttagccAGCCCAAactttt
agtcggccctaattttagtcaccaagcaaaaatttagtcacttagggccg
actaagttttggccgataaggtacataACACAAGAAGATTTTCTTGTTGT
ACATTTGATAAATGTGGAAACATGAAAATCTGAGTTATGTactcatttta
aattttttagttttgtttgatGGATTGAAAGAGGACTTTTTTTGATAATC
ATAAATTGCAATATAACAATTTCTTCCATCTCAATTGGATTTCCGTCCGA
GGGAATTGAGGTACAGAAAGAGGCTCTTCCAtctaaattcaacaaaattc
tgTAAAACTTTACCTAATCTTGCCTAATTCGTTGTTCAGTCAAAACTTTG
TCTTGACCACACTGAGTTTACCAATTGTCTAATGTTACCAGTGAGAGCTC
TTGTTCTTTTTACCTCGCAAAATAAGCAAAGTTTTCTCGTTCATAAGAAG
GATTAATCTGAAATTGACTAAGGTCGTTTTCCTTCGAacctcatttttat
tttattcgaACCTCGTTTTCGTTTCAGATAGAGGAGATGACAAATGAAGT
GAAATTTAGTTCTTACGTGGAAACCGGCCATTACGTCAATCAAGTCGATC
TGGAAGCCCTTATTAAACGTGAGTGAACATCTCCTCTCATGATCTGATAT
TCcaatggcggattggcggccgcccacgctaaggCTCTAAAAGTGTGGGC
CAATTTTCTTATCGGAGAGGAATAATAGTCGAACTTTTATGCACCGTGTC
CCTAGCCAAGGTTCAGAAGCATAAGCTTGAAGTTATTTTGGTTGCACCCG
CCCAATCACCTGAAAACGAGGACCTTGGTTCAGACCCCTCACTGCAAAGT
CTGTGACGCAGCCTGGCGGAATTCCGTAATATAAATGTTGAAGATTTTCC
CGACCTTTCCTCTTCTTTTGATTATAATCGATCCTATTTCACATTTTCCT
CATATCTCTTGACCCCTTCTTCTTTTCGATGAAGTCTTGAAAACTAAtta
ataaagtaaaaataatctaCTTTCTGCCAGAGTTTTACATTGGTTGTATC
CTCTGTCAGATATTTCTTGAAAACTCACTTTTCCAAGCTCAAAAAATTCC
CTAGTTCTAGATTTAACGACCCTAAAATTCTTGCAAGAtcaatatcattt
tttttattctcaaTCGGTTAGTATACATCAACCATCGACCAGCATTTGGT
TTACACCCTGATCAACTAGTGAACGCGTTCGAGAAGATCGGATTAATCGG
AGAAGAAGGAGATGTTGAAATTCAAAGAAGTGAATTGCTCGCCATCCTTC
AAGACAAAGGTCTGTTTCTCTACCCATTCCCCGAAATTCCCCTCTCAAAA
GTGTTGTCCACTGTGTTGAGCTATATGACGCTCGCCTCGCTactttgttt
atatttaaaGCCGTCATATTTGTTTACTTCTGAACATTACTTAGAGAGCT
ACTTTTAtgaatttcattattttgaaaaatctaaatttctgGTCTGCAAT
TTGATTCGTTAACTTAGTTTTACTGTAAGGTAAATATATAAGTCTGATAA
GTGGATTTGCAGGTTGGAGTTTTTCCCCTCACTTATGACAATGAAAGTTA
CCTCACGAACCACGATAACGATAAACTAACAGatgaagaaaattatttta
aattcgATTCTGTTTTATTTCAGGCGAACATTTATCGGAAGGAGAATTAG
CCGAATATTTGTCGTCGTTATTCGGCGGAGGAGCGGACACCGAGAATTTT
TCGTTAGAAGATTGTTTACCGGAGAAGATTTCCATTTCCATGTTCGCTAA
ACAATTATTAGGGTTGGAACTCGCTTCTGAGTGATTCTTTGGCTTGATGT
AAACTTTCTTGTtgataaatttaatttctttattATATTGAGAATGAGTA
AAATCTGATTATACCTTTCAACTTCCTAGGATGTGTGTATGGGTAATGCC
TTATTCGGAACTTGAAAAATCCAAACAGAGTTTGAATTctccaaataaaa
tttttcctattgaaataaCTTTTCTATGCCAACCATCAGATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042123XLOC_042123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067432-exon-scaffold_47-1491911889:65064..65121TCONS_00067432-exon-scaffold_47-1491911889:65064..65121Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1510915933:65064..65121TCONS_00067432-exon-scaffold_47-1510915933:65064..65121Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1575043694:65064..65121TCONS_00067432-exon-scaffold_47-1575043694:65064..65121Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1491911889:65209..65337TCONS_00067432-exon-scaffold_47-1491911889:65209..65337Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1510915933:65209..65337TCONS_00067432-exon-scaffold_47-1510915933:65209..65337Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1575043694:65209..65337TCONS_00067432-exon-scaffold_47-1575043694:65209..65337Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1491911889:65757..65862TCONS_00067432-exon-scaffold_47-1491911889:65757..65862Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1510915933:65757..65862TCONS_00067432-exon-scaffold_47-1510915933:65757..65862Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1575043694:65757..65862TCONS_00067432-exon-scaffold_47-1575043694:65757..65862Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1491911889:66691..66781TCONS_00067432-exon-scaffold_47-1491911889:66691..66781Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1510915933:66691..66781TCONS_00067432-exon-scaffold_47-1510915933:66691..66781Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1575043694:66691..66781TCONS_00067432-exon-scaffold_47-1575043694:66691..66781Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1491911889:67335..67472TCONS_00067432-exon-scaffold_47-1491911889:67335..67472Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1510915933:67335..67472TCONS_00067432-exon-scaffold_47-1510915933:67335..67472Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1575043694:67335..67472TCONS_00067432-exon-scaffold_47-1575043694:67335..67472Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1491911889:67837..68209TCONS_00067432-exon-scaffold_47-1491911889:67837..68209Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1510915933:67837..68209TCONS_00067432-exon-scaffold_47-1510915933:67837..68209Clytia hemisphaericaexon
TCONS_00067432-exon-scaffold_47-1575043694:67837..68209TCONS_00067432-exon-scaffold_47-1575043694:67837..68209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:65064..68209 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.90161	0.871947	3.90163	5.29605	7.77934	6.64716e-09	0.000856674	4.25021	1.20388	1.85806	2.30657	2.22081	1.25237	0.068586	0.922086	0.527176	0.103034	0.919479	3.66	3.06167	0	2.54208	3.67619	0.646263	0.00758158	1.75066e-07	3.32479	3.37831	1.00098	2.46146e-05
Blast
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BLAST of TCONS_00067432 vs. Swiss-Prot (Human)
Match: CF251 (Cilia- and flagella-associated protein 251 OS=Homo sapiens GN=WDR66 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.021e-48
Identity = 100/220 (45.45%), Postives = 151/220 (68.64%), Query Frame = 3 
Query:   57 SALEASARLGGEGLTPFYTXXXXXXXXXXXXXXXXYFYYAQMKHQGIDTMETREVSGTIPLSEIPFVVRALGFYPTEQQIEEMTNEVKFSSYVETGHYVNQVDLEALIKLYINHRPAFGLHPDQLVNAFEKIGLIGEEGDVEIQRSELLAILQDKGEHLSEGELAEYLSSLFG---GGADTE---------NFSLEDCLPEKISISMFAKQLLGLELASE 680
            S LEA+  LGGE LTPFY LL GGREG+ + ELE+YFYY+Q++ QGIDTMETR+VS  I LSE+PFV+RA+GFYP+E++I+++ NE+KF  YV+TG  +++++L   +K+Y+NH+P FG     +  +FE +G    +G   I+R + L +L  KGEH++E E+ +  +SLFG    G  +E            LE+ LP++I+  +FA ++LGL ++ +
Sbjct:  924 SVLEAAVSLGGEDLTPFYGLLSGGREGKFYRELEDYFYYSQLRSQGIDTMETRKVSEHICLSELPFVMRAIGFYPSEEKIDDIFNEIKFGEYVDTGKLIDKINLPDFLKVYLNHKPPFGNTMSGIHKSFEVLGYTNSKGKKAIRREDFLRLLVTKGEHMTEEEMLDCFASLFGLNPEGWKSEPATCSVKGSEICLEEELPDEITAEIFATEILGLTISED 1143
The following BLAST results are available for this feature:
BLAST of TCONS_00067432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CF2514.021e-4845.45Cilia- and flagella-associated protein 251 OS=Homo... [more]
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