TCONS_00067429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067429
Unique NameTCONS_00067429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067429 ID=TCONS_00067429|Name=TCONS_00067429|organism=Clytia hemisphaerica|type=transcript|length=455bp
NNatttatttatttatttaacgaCCCAAGGTTTTTGTCCTGCCAAAAGAT
CGGTCAGATTGGCGAACGAAGGCCGACCCCTATAGCTCGAGGGAGGTAGG
TTTTCGTCCAAGGGAGGAGCTCGTTAGTTCAGGGAGTTCCTTAGGTTTAT
TTATAATTATACAAAGATAAGGAAGATCAAGACACATAGACAACGGTCAC
CATAAAACGAAGAAAATTGAGATATATTGAGAAATGATTTAAGACGGACT
TAATTTAGAGACATACATACACATACTTGATCGGAGAGATGAGACAAATG
TTTGTTCGTCATATAATTGATCTTGTTTATAGataatatataataaattt
CTTGTGATTATGTAATTCGTTTAACTTTATTCATATTATCTATTTATATT
ACGTATAATTATCTATTACAGGCCTTGCGTTACAAAGATAATCCAATTGT
CTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_469:567882..568336

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067429 ID=TCONS_00067429|Name=TCONS_00067429|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_469:567882..568336 (Clytia hemisphaerica)
CGGAGACAATTGGATTATCTTTGTAACGCAAGGCCTGTAATAGATAATTA
TACGTAATATAAATAGATAATATGAATAAAGTTAAACGAATTACATAATC
ACAAGaaatttattatatattatCTATAAACAAGATCAATTATATGACGA
ACAAACATTTGTCTCATCTCTCCGATCAAGTATGTGTATGTATGTCTCTA
AATTAAGTCCGTCTTAAATCATTTCTCAATATATCTCAATTTTCTTCGTT
TTATGGTGACCGTTGTCTATGTGTCTTGATCTTCCTTATCTTTGTATAAT
TATAAATAAACCTAAGGAACTCCCTGAACTAACGAGCTCCTCCCTTGGAC
GAAAACCTACCTCCCTCGAGCTATAGGGGTCGGCCTTCGTTCGCCAATCT
GACCGATCTTTTGGCAGGACAAAAACCTTGGGtcgttaaataaataaata
aatNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042122XLOC_042122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067429-exon-scaffold_469-1491911889:567882..568336TCONS_00067429-exon-scaffold_469-1491911889:567882..568336Clytia hemisphaericaexon
TCONS_00067429-exon-scaffold_469-1510915933:567882..568336TCONS_00067429-exon-scaffold_469-1510915933:567882..568336Clytia hemisphaericaexon
TCONS_00067429-exon-scaffold_469-1575043694:567882..568336TCONS_00067429-exon-scaffold_469-1575043694:567882..568336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:567882..568336 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.0561	15.6223	3.48934	4.14131	0	0	2.01301	3.76639	3.2853	4.27789	0.856683	3.60048	1.19405	0.860085	1.1317	0.268978	0.218584	0	0.542297	0.534281	2.57569	0.539112	4.24701	5.58498	0.538541	1.63909	3.87635	5.10151	7.0506	5.14195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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