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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067422 ID=TCONS_00067422|Name=TCONS_00067422|organism=Clytia hemisphaerica|type=transcript|length=1057bp
cgcaATTCAAAAAAGTTGGTGATCATCAAAAGAAAATGAGGGTATTAAGG
AGTGTAAATGCTCAAACCTGAAGGTAAGGATAAACAGAAAGGCGGGAACT
TAAGAATCTCGAAGTATAGGTGTTCTTAGTCATAACAAATTAGGTTTCAT
AAGATTTTTCTAGTTCTGCTATAAATTTATTTCTATCTAATATATTTGAT
ATCTTTGATGGTAATTTGTTCCATAAGTCAATGGTGAAGAGAAAGTACGA
GTTCAAATAAACTTTCAGTCGGGCATGTTGTCATTTGTATCTAATATTTA
CACAGCATTGACGTGCTGGTTTTAATTGATCGTCcacaaattttgaatta
ttgTTGATGTCAAATAGTAACTTCAGACATGCTATTTGTCTTCTAGTTTC
CAATGGCCGCAGTTTTAGTGATTTGATCATTCGAGTTGGACTGAAGACAT
ATTGCCACTTGTTTTCCACCCAACGAGCCAACTTTCTTTGTACCATTTCT
AAGTTGTTGATGAGTACTGTGTACTATTTGGACTCCAAACAGAGctgtgt
gtgtgtgtttctGTTCGAATATGTGTGCGTGaacttagtgtgttttccca
gggtgggagggggtgggtggtgtaacaggaagaacttttcaaagaaaact
actcaaagaaattgtcataaaataaaagtaaaaatatttcttatattcat
tattttgttgttactaTATTAACATTATACCTAACTAGATATACCTTATT
ATtaggtgataaaagagaaagattattaTATTATGATAattgtttattca
tttttattattattatttcttttttctttagttctgtaacaatttttcag
tttcttctaggttctCCATtcttgatatgcataagtcaagatgacgtcat
attttttaacggaagcacccaaaaaagctgGTCTTTGACAGAGGCTCTGT
GTTTCTATTTatagtaacagagagaggtcaaatcccggcttttttagggt
gtttccgctagaaaaatgacttccgcatatcaagaattgtaTTAGctgaa
atctttg Run BLAST on NCBI protein sequence of TCONS_00067422-protein >TCONS_00067422-protein ID=TCONS_00067422-protein|Name=TCONS_00067422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MSNSNFRHAICLLVSNGRSFSDLIIRVGLKTYCHLFSTQRANFLCTISKL
LMSTVYYLDSKQSCVCVFLFEYVCVNLVCFPRVGGGGWCNRKNFSKKTTQ
RNCHKIKVKIFLIFIILLLLY Run BLAST on NCBI transcript from alignment at scaffold_469:477345..478401 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067422 ID=TCONS_00067422|Name=TCONS_00067422|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at scaffold_469:477345..478401 (Clytia hemisphaerica)
caaagatttcagCTAAtacaattcttgatatgcggaagtcatttttctag
cggaaacaccctaaaaaagccgggatttgacctctctctgttactatAAA
TAGAAACACAGAGCCTCTGTCAAAGACcagcttttttgggtgcttccgtt
aaaaaatatgacgtcatcttgacttatgcatatcaagaATGGagaaccta
gaagaaactgaaaaattgttacagaactaaagaaaaaagaaataataata
ataaaaatgaataaacaatTATCATAATAtaataatctttctcttttatc
acctaATAATAAGGTATATCTAGTTAGGTATAATGTTAATAtagtaacaa
caaaataatgaatataagaaatatttttacttttattttatgacaatttc
tttgagtagttttctttgaaaagttcttcctgttacaccacccaccccct
cccaccctgggaaaacacactaagttCACGCACACATATTCGAACagaaa
cacacacacacagCTCTGTTTGGAGTCCAAATAGTACACAGTACTCATCA
ACAACTTAGAAATGGTACAAAGAAAGTTGGCTCGTTGGGTGGAAAACAAG
TGGCAATATGTCTTCAGTCCAACTCGAATGATCAAATCACTAAAACTGCG
GCCATTGGAAACTAGAAGACAAATAGCATGTCTGAAGTTACTATTTGACA
TCAAcaataattcaaaatttgtgGACGATCAATTAAAACCAGCACGTCAA
TGCTGTGTAAATATTAGATACAAATGACAACATGCCCGACTGAAAGTTTA
TTTGAACTCGTACTTTCTCTTCACCATTGACTTATGGAACAAATTACCAT
CAAAGATATCAAATATATTAGATAGAAATAAATTTATAGCAGAACTAGAA
AAATCTTATGAAACCTAATTTGTTATGACTAAGAACACCTATACTTCGAG
ATTCTTAAGTTCCCGCCTTTCTGTTTATCCTTACCTTCAGGTTTGAGCAT
TTACACTCCTTAATACCCTCATTTTCTTTTGATGATCACCAACTTTTTTG
AATtgcg Coding sequence (CDS) from alignment at scaffold_469:477345..478401 >TCONS_00067422 ID=TCONS_00067422|Name=TCONS_00067422|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_469:477345..478401 (Clytia hemisphaerica)
TTAATAtagtaacaacaaaataatgaatataagaaatatttttactttta
ttttatgacaatttctttgagtagttttctttgaaaagttcttcctgtta
caccacccaccccctcccaccctgggaaaacacactaagttCACGCACAC
ATATTCGAACagaaacacacacacacagCTCTGTTTGGAGTCCAAATAGT
ACACAGTACTCATCAACAACTTAGAAATGGTACAAAGAAAGTTGGCTCGT
TGGGTGGAAAACAAGTGGCAATATGTCTTCAGTCCAACTCGAATGATCAA
ATCACTAAAACTGCGGCCATTGGAAACTAGAAGACAAATAGCATGTCTGA
AGTTACTATTTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067422-exon-scaffold_469-1491911889:477345..478401 | TCONS_00067422-exon-scaffold_469-1491911889:477345..478401 | Clytia hemisphaerica | exon |
| TCONS_00067422-exon-scaffold_469-1510915933:477345..478401 | TCONS_00067422-exon-scaffold_469-1510915933:477345..478401 | Clytia hemisphaerica | exon |
| TCONS_00067422-exon-scaffold_469-1575043694:477345..478401 | TCONS_00067422-exon-scaffold_469-1575043694:477345..478401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:477345..478401 . |
Blast
The following BLAST results are available for this feature:
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