TCONS_00067408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067408
Unique NameTCONS_00067408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067408 ID=TCONS_00067408|Name=TCONS_00067408|organism=Clytia hemisphaerica|type=transcript|length=869bp
atctgattggttCAGACAGGACACTGCAGGAGCTTTAAAATCGCCTTGAA
AACACCTTGAACACCAGAGAAAAGACATTCTGGCTTGGAGAAAATTGTTT
TGTGGAGAAAATTGAGAGTTGATTTATGGAAATCCCAGAATGGGGACTAA
TTTTtgccaaaacacccaaaaaagcatgaaaggttcagaaaaagtgtttc
agaCACAGTGTTTTCAGCAGATCATTTCGATAGAAGTTgctggaatgttt
acaaggctcttgacagaaaatcctttgtttgattgtcatCCTAGCCCTTC
ATGGAAGGTGCTGTGGTAGATTGTGCTTAAGACTAGATCTGATATATAGA
AGTAATAAAATAAATACAGTACTCAAAGCTAGCAGAAAGAGAAAAGATTT
TAAGCTTATGTTtcagagctttagagctagcctgactggtagcttttgaa
aaatttcaaaattcaactgTGAAAATCTTAAATAATGCTTCTAAGAATCA
TAGGTATACAGGTACTAAATTTCCGGgtgaattttttagaatttgcGTTA
GAAGAATTAGTACAAtatcatccaaaaagacccactataTCAAAAAAGTT
AAGGGGTGTTACAGCCTCCCTAGTTTTGAACTGCCCCTTAAAAGCCTAGA
CTAGTATGAAATAGGGTTAAGGAAGTTGCATAAGTATTTCTCAGAAAATA
TGACAAGTGAAATAATAGCAGAATTTGATTAGCTGTGTTTTTAGGTTAGG
TTAGGTTaggtttatttcaaattgaagaACAAAACTGTCATCCTTCGGag
ctgggaaattcaaactaacAGCCCAAATGCCAAACCATTTTTCTAATTAA
AAGAAGGAATTATAGCATC
Run BLAST on NCBI

transcript from alignment at scaffold_469:43160..44028

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067408 ID=TCONS_00067408|Name=TCONS_00067408|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at scaffold_469:43160..44028 (Clytia hemisphaerica)
GATGCTATAATTCCTTCTTTTAATTAGAAAAATGGTTTGGCATTTGGGCT
gttagtttgaatttcccagctCCGAAGGATGACAGTTTTGTtcttcaatt
tgaaataaacctAACCTAACCTAACCTAAAAACACAGCTAATCAAATTCT
GCTATTATTTCACTTGTCATATTTTCTGAGAAATACTTATGCAACTTCCT
TAACCCTATTTCATACTAGTCTAGGCTTTTAAGGGGCAGTTCAAAACTAG
GGAGGCTGTAACACCCCTTAACTTTTTTGAtatagtgggtctttttggat
gataTTGTACTAATTCTTCTAACgcaaattctaaaaaattcacCCGGAAA
TTTAGTACCTGTATACCTATGATTCTTAGAAGCATTATTTAAGATTTTCA
cagttgaattttgaaatttttcaaaagctaccagtcaggctagctctaaa
gctctgaAACATAAGCTTAAAATCTTTTCTCTTTCTGCTAGCTTTGAGTA
CTGTATTTATTTTATTACTTCTATATATCAGATCTAGTCTTAAGCACAAT
CTACCACAGCACCTTCCATGAAGGGCTAGGatgacaatcaaacaaaggat
tttctgtcaagagccttgtaaacattccagcAACTTCTATCGAAATGATC
TGCTGAAAACACTGTGtctgaaacactttttctgaacctttcatgctttt
ttgggtgttttggcaAAAATTAGTCCCCATTCTGGGATTTCCATAAATCA
ACTCTCAATTTTCTCCACAAAACAATTTTCTCCAAGCCAGAATGTCTTTT
CTCTGGTGTTCAAGGTGTTTTCAAGGCGATTTTAAAGCTCCTGCAGTGTC
CTGTCTGaaccaatcagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042101XLOC_042101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067408-exon-scaffold_469-1491911889:43160..44028TCONS_00067408-exon-scaffold_469-1491911889:43160..44028Clytia hemisphaericaexon
TCONS_00067408-exon-scaffold_469-1510915933:43160..44028TCONS_00067408-exon-scaffold_469-1510915933:43160..44028Clytia hemisphaericaexon
TCONS_00067408-exon-scaffold_469-1575043694:43160..44028TCONS_00067408-exon-scaffold_469-1575043694:43160..44028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:43160..44028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537542	0.524188	0.258795	0.418238	0.289962	0.287277	0.138219	0.194098	0.317083	0.392759	0.762442	1.074	0.609503	0.705412	0.152617	0.196538	0.282471	0.248163	0.114284	0.298974	0.521895	0.320502	0	0.168101	0.346281	0.482455	0.515953	0.157326	0.298718	0.305503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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