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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067402 ID=TCONS_00067402|Name=TCONS_00067402|organism=Clytia hemisphaerica|type=transcript|length=2148bp
AAACTACATAAAAATATGATGGTGGTGGTGGTCGATGGATAGCTGACGGC
AGAATTATCTGGCACTTTGTTGAAGAAAAGCAAGATGATGCAAACGTACA
AATATCCAGAGGGTGACATTTATGAAGGGGATTGGTCGAAAGAAGGCAAA
AAACACGGTATCGGGAAAATCACGTTCACTGATGGCACAATGTATGAAGG
ACGTTTCGTCAACGGTTTTTTTGCTGGCTATGGAAGCCTAAGGTTACCTG
ATAACACTGTTTATGCAGGTGAATTCAGTGACGGTCTTTTCCATGGCTTT
GGCGTTTATCTGCGCTTTGATGGTATGCAGTACGAGGGAGAGTTCAAAGA
AGGCTCCCCCAACGGTCCAGGGCTGGTCACTTTCGGGAATGGGTCCTGTG
GCAACCCCCGGATGGAAGGTCATTTCGACGGAAGTGTTTTGAAGAGTCGA
CAATCGGTGAAAGAATACATTCGAAGGGCTCAAGTTAGTCGTGACCGCGC
TTTAAGGACTACTGTCGCCAATGCGTTGAAAGAAGCGGAAAATTGAGAGA
CTTTCTTGGGAATTATCGAGGTTGGTTGTGTTCGAACCTCTTTCGGTTTA
TTAATCATCTTGGTGTATAAAGCAGTTGTATTGATTGTTGGAAAGATGTT
CGAGACATCTATTATGATTACTGTTAGAAACAAAACACAGGGCCAATACA
AAACCATAATGTACTTCATGGAACCTTTTGTGGGTGATTTGATGGACTGT
AATGAAACATGAcaagaaattttaatatttttcaatttttttgaaaaagg
tagAAATTTTTTTACGATATTAGAATAATTATGATACACAGGTAAagtaa
atattaatttttttggcaaaaaaggaaaaaaaatgaactttttataaCAC
GCTTCATACAAGCTGACCACTTTGCATTTCATAAAAAATGCTGTAACTTT
ATTCACTAgttaaacactttttttttggaatatcaaatataaaataatta
ttacgaataaaaaaacatttgtttgcaGTCTAAGAGATCCATTGTTCAAC
CACTCGGGAGTTAATTATTTCGTGTACAGCTGTTAGATATACGGTTGGCT
CTAATGAGAAGACTtgaatcgcaaaatttaatgaaataaatttccgccaa
aattcGTTTATTAGAAGATTTTTTAACTGCAGTTTTTTCCAAGAGACTAG
ACTAGCCGATTTTCAGCAATTCATGGCGAAttttgtttcataaaaaaaaa
agaaaaatcttagTTGAGATTCAGAAAATAAATtacgaaaaaaaacaaat
tgttATAGATTTTCTACCTAAAAAagttatatataaaaaatattggtGTT
TATATTGAAGTCCCGATATCGTCTTTGATTTTAACGCGCATTCCTTCTTG
AGGCATGCGTGGGATTGTCAACTTCGTTTCAGTCCTCAACGAGCTAAAGA
CCTACGCGGCAAACCTCATgtcgttttataaataaaatctatGAAAGATA
TACCAAATGTACATTCCGCCCTGAGAAAGTTCAGACAAATGGGCGTGTCA
ATCATTCTCCGCCATCACGCCCTTTTtgtcttttaattattttccaCCGT
TTATTTTGGTGACCTTACTTCTTAGCGTTTTGATTTCCTTCAAGTCCTTC
AGGCGAACGGAAACAGGTCTTGGGCAAATACTGATACAATTGATGCACAA
ATTCCACTTGCGCCCTCAGTGGATCCAAGTCTAATTCGTATTCAGTAATT
GTCGCATTCTgagattttaatttattttgtaaTGAATTGATTTCGAATGA
AATAGCACCATCTATTTGATCTTGAGCTGCGGCGAACCTTCTTTCAGCTT
CTTCCAACTCGGCAAGGTTGATTTCATCTAAATTCTCGATAGTTTCGATC
AAATTATCGACATCCTCGAGACTCTTTGTCAGATCGTTATTTGCTTTAGA
GGCAACCTCGGCAGCCATCTTGGAATCGTCACTCGCCTTATCGACTTTCT
TTCCATCCTCGATGGCGATTTCCTTGTATTCATCTAACTTCTTGTCGGTC
TCTTTGATGTTGTTCTGTGTCTCGACTACCTCGTTCATCATAAAGGACAT
GGTTTCGTTCAACAATTTCTTGGCTTGGGCAATCAAGTCATCAATATC Run BLAST on NCBI transcript from alignment at scaffold_469:440034..443915- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067402 ID=TCONS_00067402|Name=TCONS_00067402|organism=Clytia hemisphaerica|type=transcript|length=3882bp|location=Sequence derived from alignment at scaffold_469:440034..443915- (Clytia hemisphaerica)
AAACTACATAAAAATATGATGGTGGTGGTGGTCGATGGATAGCTGACGGC
AGAATTATCTGGCACTTTGTTGAAGAAAAGCAAGGTTAGAATATTTCTTA
CTCTTTGGTTACAAAAAACTCAGTTTTCTCATTTTCTTCACGCAATCAGT
CGGAAATTTGATATTCCGAAAAATGTTATTGAAGAATTATTTTAAGCAGT
TTTAAGGTGTAAAGTTGTAATTGTATCTTTCTCTGTTCTACTTAACCCTT
TGAGTGCCAGGGTCCTTTTTTCTAAGTTTTTTTTAAAAAATCGCTAGTTC
AAACTTTAAGGGCTTATATCTCCTGATCTAGAAGGAATTAGAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCCTATA
TAGCCCATGTCGTATATATACGACATCGGCACTTAAAGGGTTAAAGAAGT
TTTATTCCAGTTGAAAAGTATTCCCTCTTTTCTATTCTATTCTATTCTAT
TATGGTTGAGTTACAGGAGGCCCTAGGAGCCCATTCTCGCAACTATAGAT
GCTTTGAGTAAGCATCCCGTCAGCACCTTGAACTGACTACCCAATTCCCC
TCACATGGCATGGGTTGACCCGGGCGAAGGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCGAAGGTTTGT
TCACTTGCCAAGTGAACCGTTGTGAGTGGGAATCGAACCTTGGTCGCCTG
TACAGGAATCAAGGTTGATGTCCACTATACCACAACGCCTTCATAGGAGA
AAGAATTCAAACTAATTCCGTCTCTTATATTTCCACCTGTTTAGATGATG
CAAACGTACAAATATCCAGAGGGTGACATTTATGAAGGGGATTGGTCGAA
AGAAGGCAAAAAACACGGTATCGGGAAAATCACGTTCACTGATGGCACAA
TGTATGAAGGACGTTTCGTCAACGGTTTTTTTGCTGGCTATGGAAGCCTA
AGGTTACCTGATAACACTGTTTATGCAGGTTTGTCCAACAATAAATTTAA
TTACTCAGTGATTTAGCTTTTCATTTTTTTCATCTTCATTTTTCAATTGT
TTTCATCTTTTATCATTTAGACCCTTCTCCTTGAAAATATCTTTCCAACG
GCGTAAAAGCTCTAACATAGCATGAATAAGTGTTTGGAAAATGATAAAAA
ACTAAACTGTCCACATACATTTGAGACAGGCTTTAGTATCTAACAGTAAA
TATGCCAGATTTTCTGGAGGTTTTTTTTCATTTTTCGAAATATTTGATTT
GTGGAGACTTAGGACGAATTTGTCACTACCGATTTGGAAAAATACTGAAG
TTGAGCTAGTATCTAACAGTAAACAAAATCCTATCCCACCTTGCCGGTGA
CTAAAGTCTTTAACAATTTTTGGTCCAATTTATCCCTAATTTAAGACCAA
AAATGCTATACACTAAGATGATAAAATATTTCTATTATTGCTCTTTCTGT
AGGTGAATTCAGTGACGGTCTTTTCCATGGCTTTGGCGTTTATCTGCGCT
TTGATGGTATGCAGTACGAGGGAGAGTTCAAAGAAGGCTCCCCCAACGGT
CCAGGGCTGGTCACTTTCGGGAATGGGTCCTGTGGCAACCCCCGGATGGA
AGGTCATTTCGACGGAAGTGTTTTGAAGAGTCGACAATCGGTGAAAGAAT
ACATTCGAAGGGCTCAAGTTAGTCGTGACCGCGCTTTAAGGACTACTGTC
GCCAATGCGTTGAAAGAAGCGGAAAATTGAGAGACTTTCTTGGGAATTAT
CGAGGTTGGTTGTGTTCGAACCTCTTTCGGTTTATTAATCATCTTGGTGT
ATAAAGCAGTTGTATTGATTGTTGGAAAGATGTTCGAGACATCTATTATG
ATTACTGTTAGAAACAAAACACAGGGCCAATACAAAACCATAATGTACTT
CATGGAACCTTTTGTGGGTGATTTGATGGACTGTAATGAAACATGACAAG
AAATTTTAATATTTTTCAATTTTTTTGAAAAAGGTAGAAATTTTTTTACG
ATATTAGAATAATTATGATACACAGGTAAAGTAAATATTAATTTTTTTGG
CAAAAAAGGAAAAAAAATGAACTTTTTATAACACGCTTCATACAAGCTGA
CCACTTTGCATTTCATAAAAAATGCTGTAACTTTATTCACTAGTTAAACA
CTTTTTTTTTGGAATATCAAATATAAAATAATTATTACGAATAAAAAAAC
ATTTGTTTGCAGTCTAAGAGATCCATTGTTCAACCACTCGGGAGTTAATT
ATTTCGTGTACAGCTGTTAGATATACGGTTGGCTCTAATGAGAAGACTTG
AATCGCAAAATTTAATGAAATAAATTTCCGCCAAAATTCGTTTATTAGAA
GATTTTTTAACTGCAGTTTTTTCCAAGAGACTAGACTAGCCGATTTTCAG
CAATTCATGGCGAATTTTGTTTCATAAAAAAAAAAGAAAAATCTTAGTTG
AGATTCAGAAAATAAATTACGAAAAAAAACAAATTGTTATAGATTTTCTA
CCTAAAAAAGTTATATATAAAAAATATTGGTGTTTATATTGAAGTCCCGA
TATCGTCTTTGATTTTAACGCGCATTCCTTCTTGAGGCATGCGTGGGATT
GTCAACTTCGTTTCAGTCCTCAACGAGCTAAAGACCTACGCGGCAAACCT
CATGTCGTTTTATAAATAAAATCTATGAAAGATATACCAAATGTACATTC
CGCCCTGAGAAAGTTCAGACAAATGGGCGTGTCAATCATTCTCCGCCATC
ACGCCCTTTTTGTCTTTTAATTATTTTCCACCGTTTATTTTGGTGACCTT
ACTTCTTAGCGTTTTGATTTCCTTCAAGTCCTTCAGGCGAACGGAAACAG
GTCTTGGGCAAATACTGATACAATTGATGCACAAATTCCACTTGCGCCCT
CAGTGGATCCAAGTCTAATTCGTATTCAGTAATTGTCGCATTCTGAGATT
TTAATTTATTTTGTAATGAATTGATTTCGAATGAAATAGCACCATCTATT
TGATCTTGAGCTGCGGCGAACCTTCTTTCAGCTTCTTCCAACTCGGCAAG
GTTGATTTCATCTAAATTCTCGATAGTTTCGATCAAATTATCGACATCCT
CGAGACTCTTTGTCAGATCGTTATTTGCTTTAGAGGCAACCTCGGCAGCC
ATCTTGGAATCGTCACTCGCCTTATCGACTTTCTTTCCATCCTCGATGGC
GATTTCCTTGTATTCATCTAACTTCTTGTCGGTCTCTTTGATGTTGTTCT
GTGTCTCGACTACCTCGTTCATCATAAAGGACATGGTTTCGTTCAACAAT
TTCTTGGCTTGGGCAATCAAGTCATCAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067402-exon-scaffold_469-1575043694:443832..443915 | TCONS_00067402-exon-scaffold_469-1575043694:443832..443915 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1575043694:442388..442571 | TCONS_00067402-exon-scaffold_469-1575043694:442388..442571 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1575043694:440034..441913 | TCONS_00067402-exon-scaffold_469-1575043694:440034..441913 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1510915933:443832..443915 | TCONS_00067402-exon-scaffold_469-1510915933:443832..443915 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1510915933:442388..442571 | TCONS_00067402-exon-scaffold_469-1510915933:442388..442571 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1510915933:440034..441913 | TCONS_00067402-exon-scaffold_469-1510915933:440034..441913 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1491911889:443832..443915 | TCONS_00067402-exon-scaffold_469-1491911889:443832..443915 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1491911889:442388..442571 | TCONS_00067402-exon-scaffold_469-1491911889:442388..442571 | Clytia hemisphaerica | exon |
| TCONS_00067402-exon-scaffold_469-1491911889:440034..441913 | TCONS_00067402-exon-scaffold_469-1491911889:440034..441913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:440034..443915 - |
Blast
BLAST of TCONS_00067402 vs. Swiss-Prot (Human)
Match: MORN4 (MORN repeat-containing protein 4 OS=Homo sapiens GN=MORN4 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.083e-31 Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 1
Query: 94 TYKYPEGDIYEGDWSKEGKKHGIGKITFTDGTMYEGRFVNGFFAGYGSLRLPDNTVYAGEFSDGLFHGFGVYLRFDGMQYEGEFKEGSPNGPGLVTFGNGSCGNPRMEGHFDGSVLKSRQSVKEYIRRAQVSRDRALRTTV 516
++ Y G+ Y G+W KEG++HG G++ F DG Y G F NG F G+G L D + Y GEF+ G F+G GV++R+D M +EGEFK G +G GL+TF +GS G PR EG F+ + L R+ ++RAQ + A T
Sbjct: 7 SFTYSSGEEYRGEW-KEGRRHGFGQLMFADGGTYLGHFENGLFNGFGVLTFSDGSRYEGEFAQGKFNGVGVFIRYDNMTFEGEFKNGRVDGFGLLTFPDGSHGIPRNEGLFENNKLLRREKCSAIVQRAQSASKSARNLTA 146
The following BLAST results are available for this feature:
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