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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067390 ID=TCONS_00067390|Name=TCONS_00067390|organism=Clytia hemisphaerica|type=transcript|length=3263bpRun BLAST on NCBI transcript from alignment at scaffold_469:269595..286501- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067390 ID=TCONS_00067390|Name=TCONS_00067390|organism=Clytia hemisphaerica|type=transcript|length=16907bp|location=Sequence derived from alignment at scaffold_469:269595..286501- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067390 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3) HSP 1 Score: 145.976 bits (367), Expect = 4.257e-35 Identity = 172/691 (24.89%), Postives = 294/691 (42.55%), Query Frame = 3
Query: 138 CACLDGYTGKFCETEINHCESAPCLXXXXXXXXXXXXS---CACAEGFGGKKCSTDL-QERCK--EMCVHGL------------CEKG---------------------ACECHQGWSGLTCQ-----DESCPSECNQQFSE-------CNQACNIPQCQFDHYRCTLGID-PFKGCRKTSCRQATGDGRCDVECNIAECLFDGGDCR-NRSTCDLEEKCSIQYGNQRCDKECDNAGCGYDALECRSNVTKNLLPGKLVLDISSNQNQTXXXXXXXXXXXXX---------XNSRVNVVEIRRGGEETVNRRK-----RNVKSSDRQSVS---LRTTLDNGGCMRDCFHTVNQAARYIAFKASKQQLDHLPFKVRSVAVEKDSAQKEDDVINKYLWLFTLFVIAIVLMFG-IWYQRRQKGTSLWVPPTLT---ELANSPRNETSS--AVPRK-MCKEIRPSHMPILHSDDEDLEKESCLPSSSANEDEGTDCDHKEKIIKDNPYILHFAIHYGFMDLFKEQLDDLKNINLQDHNGRTPLHVAIALQRHEMFEELIAVKGIDLNIRDGNGETPLM---------------EACNAYSTDQVQKLLKAG-SKATLTNRQGKTALHVSAQIDNYQAVRLLVEVNSNVNKQDSMGRTPLHLAILEDSEQSTIILLQSG-SNTSIRDTDGLTPLAL 1928
C C +TG+ CET ++ C PCLNGG C N C C GF G +C + Q +C+ E CVH CE G +C+C +SG C+ + P+ C Q+ C++ACN CQ+D C+L ++ P+ C + +CD CN ECLFD +C+ N TC ++ C+ + + CD+ C++ CG+D L+C ++ +NL G LV+ + Q +++ +S+ ++ GE++ +K R++ Q V+ + +DN C++D H A AS L + + SV E + ++ + YL + +I +++ G I +R++K SLW+P T + +N R E AV K + ++ +++ + + ++ E P EDE + + I + + +Q + +I RTP ++AL + +E V +D+N+R +G TPLM E S + + L+ G S T+R G+ ALH++A+ A + L++ ++ N QD+MGR PLH A+ D++ IL+++ ++ R DG TPL L
Sbjct: 1290 CVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVKCRKGEQCVHTASGPRCFCPSPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSRCELYTAPPSTPPATCLSQYCADKARDGVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVECLFDNFECQGNSKTCKYDKYCADHFKDNHCDQGCNSEECGWDGLDCAADQPENLAEGTLVIVVLMPPEQLLQDARSFLRALGTLLHTNLRIKRDSQGELMVYPYYGEKSAAMKKQRMTRRSLPGEQEQEVAGSKVFLEIDNRQCVQDSDHCFKNTDAAAALLASHAIQGTLSYPLVSVVSESLTPERTQLL---YLLAVAVVIILFIILLGVIMAKRKRKHGSLWLPEGFTLRRDASNHKRREPVGQDAVGLKNLSVQVSEANLIGTGTSEHWVDDEGPQPKKVKAEDEALLSEEDDPIDRRP---------------WTQQHLEAADIR------RTP---SLALTPPQAEQE---VDVLDVNVRGPDGCTPLMLASLRGGSSDLSDEDEDAEDSSANIITDLVYQGASLQAQTDRTGEMALHLAARYSRADAAKRLLDAGADANAQDNMGRCPLHAAVAADAQGVFQILIRNRVTDLDARMNDGTTPLIL 1950 HSP 2 Score: 99.7525 bits (247), Expect = 6.501e-21 Identity = 57/160 (35.62%), Postives = 83/160 (51.88%), Query Frame = 3
Query: 1422 LHFAIHYGFMDLFKEQLDDLKNINLQDHNGRTPLHVAIALQRHEMFEELIAVKGIDLNIRDGNGETPLMEACNAYSTDQVQKLLKAGSKATLTNRQGKTALHVSAQIDNYQAVRLLVEVNSNVNKQDSMGRTPLHLAILEDSEQSTIILLQSGSNTSIRD 1901
LH A Y D K LD + N QD+ GR PLH A+A +F+ LI + DL+ R +G TPL+ A V +L+ + + GK+ALH +A ++N +A LL++ +N + QD+ TPL LA E S ++ ILL +N I D
Sbjct: 1881 LHLAARYSRADAAKRLLDAGADANAQDNMGRCPLHAAVAADAQGVFQILIRNRVTDLDARMNDGTTPLILAARLAVEGMVAELINCQADVNAVDDHGKSALHWAAAVNNVEATLLLLKNGANRDMQDNKEETPLFLAAREGSYEAAKILLDHFANRDITD 2040 The following BLAST results are available for this feature:
BLAST of TCONS_00067390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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