|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067381 ID=TCONS_00067381|Name=TCONS_00067381|organism=Clytia hemisphaerica|type=transcript|length=3461bpRun BLAST on NCBI protein sequence of TCONS_00067381-protein >TCONS_00067381-protein ID=TCONS_00067381-protein|Name=TCONS_00067381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1001bp LENTQIKMSNHSMNAGGLKEAKEYMMDKEIPQLFESMMTALMYKKPEDHIRun BLAST on NCBI transcript from alignment at scaffold_469:227285..250411- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067381 ID=TCONS_00067381|Name=TCONS_00067381|organism=Clytia hemisphaerica|type=transcript|length=23127bp|location=Sequence derived from alignment at scaffold_469:227285..250411- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_469:227285..250411- >TCONS_00067381 ID=TCONS_00067381|Name=TCONS_00067381|organism=Clytia hemisphaerica|type=CDS|length=66132bp|location=Sequence derived from alignment at scaffold_469:227285..250411- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067381 vs. Swiss-Prot (Human)
Match: KAD5 (Adenylate kinase isoenzyme 5 OS=Homo sapiens GN=AK5 PE=1 SV=2) HSP 1 Score: 241.121 bits (614), Expect = 3.879e-68 Identity = 166/583 (28.47%), Postives = 289/583 (49.57%), Query Frame = 2
Query: 59 EAKEYMMDKEIPQLFESMMTALMYKKPEDHIEFLETCLNKAKE---DPKIRWHSFI----QPLPPIPKATEKIRTEAESPQPFAEDVLASPKAVSPVQNAPSDIVQKKTEASLLAEQVFNKHMQEIDALDNDDEKPWYADYTEKYIDTSAIQEKP-IVFVLGGPGSGKGTQCAKIVEKYGFLHLSAGDLLRAEVKKGS--EIGAKIDQAIKEGQLVPQDVTICLLKEAMVAKADSKGFLIDGFPREIKQGKQFERQVASAKLMLNYECPDEVLTERLIERGKHSGRVDDNIESIKKRLVLFHEKTSPVVQHYSE--IVSSIQANRSIDEVFEDTCKALEQSI--NSQPSTTDTSLDLAK----------------------------------------PIVFILGAKSSGREKQCELLSHRYSLHHVSLDTILKED-------SEKFQDLMISYADNIPMGVALEAINKR-IHNNKDNNGFIIDGFPRTLEEAVCFEMEICPASFVVYFECPDDV----LLRRQLGXXXXXXXXXXXXXXXXXFHSRMTPILLKYPDKLKI--INSARSEDIIFKETCDFVD 1603
+AKEY+ +EIPQLFES++ LM KPED +E+LE+CL K KE K++W +F+ + LPP+ +S + F +V+ S+ ++ + Q ++++D + A+ E+Y + +P I+ V+GGPGSGKGTQ KI E+YGF ++S G+LLR ++ S + I + I G+L PQ+ TI +K+ ++ D +G +IDGFPR++ Q FE Q+ + L++ C ++ L ERL++R + GR DDN+++ ++RL+ F + +P+V+++ E ++ + A+R DEVF D A++ + N + + + LD + I+FI+G SG+ QCE L +Y H+S +L+E+ S+ +D+M D +P G+ LE + + + + D GF+IDG+PR +++ F I V+ +C D LL+R + + K LE+++ P++ Y K ++ IN+ + + +F + C +D
Sbjct: 5 DAKEYLARREIPQLFESLLNGLMCSKPEDPVEYLESCLQKVKELGGCDKVKWDTFVSQEKKTLPPL--------NGGQSRRSFLRNVMPEN----------SNFPYRRYDRLPPIHQF---------SIESDTDLSETAELIEEYEVFDPTRPRPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGSSDLDPSMILDTGEIIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIM-ERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 559 HSP 2 Score: 234.958 bits (598), Expect = 4.559e-66 Identity = 142/429 (33.10%), Postives = 229/429 (53.38%), Query Frame = 2
Query: 1862 KVIFVAGSPGTGKSTQCQKIAESFGYAHISKDLVLREIEAGTERGLK---IVEFLKNKESVPDKLAFDILGEAMLEMDGCHGYLMEGYPANVQQISVFEDEFKLADMVLHLTCPEIVASERFLSR----GQPGDTHENYQERLDLYKEQTLPMLDL--KVDLVKEIIVSGNPEEIFEEIS----------KHFTEENSQTKPA-----------------------EETKQEVMAG---DLSNKNIVFVLGGPGSGKGTQCAKIVEKYGFCHLSTGDLLRAEVSSGSARAEEMKEIMAKGELIPLETILALLKEAMLKN-SDCKGFILDGYPRDVPQGEKFEESVGKCKFILYFHCTNECMTERLLGRAKTSGRVDDNIDTIKLRLKTFENQTLPILDKYSDR--IKKIDAMRGVDDIFADVCKELDTL 3004
K+I V G PG+GK TQ KIAE +G+ +IS +LR+ T K I + + E P + + + ++++ G +++G+P +V Q FED+ D+V+ L C ER L R G+P D + Q RL +K+ P++ + L+ + +E+F +IS K +S P+ ++ M G DL I+F++GGPGSGKGTQC K+VEKYGF HLSTG+LLR E++S S R++ +++IM +G+L+P +L LLKEAM+ + D +GF++DGYPR+V QGE+F +G + ++ C+ + MT RLL R+++S VDD TI RL+ + ++P++ Y + + KI+A +D+F +C +D++
Sbjct: 133 KIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGSSDLDPSMILDTGEIIDTGSDYEDQGDDQLNVFGEDTMGGFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 561 HSP 3 Score: 138.658 bits (348), Expect = 6.994e-34 Identity = 110/448 (24.55%), Postives = 208/448 (46.43%), Query Frame = 2
Query: 1097 IVFILGAKSSGREKQCELLSHRYSLHHVSLDTILKE-----DSEKFQDLM---ISYADNIPMGVALEAINKRIHNNKDNNGFIIDGFPRTLEEAVCFEMEICPASFVVYFECPD----DVLLRRQLGXXXXXXXXXXXXXXXXXFHSRMTPILLKYPDK--LKIINSARSEDIIFKETCDFVDFLIAGQKSQVINEEQISPEQQKDIESAVQDIVNEIAPQQSSNDEPQVKSEGKPQVEGEEDHMEVQEEPAGESGNKKLIYQEMLKNKKVIFVAGSPGTGKSTQCQKIAESFGYAHISKDLVLR-EIEAGTERGLKIVEFLKNKESVPDKLAFDILGEAMLEMDG-CHGYLMEGYPANVQQISVFEDEFKLADMVLHLTCPEIVASERFLSRGQPG----DTHENYQERLDLYKEQTLPML---DLKVDLVKEIIVSGNPEEIFEEI 2371
I+ ++G SG+ Q ++ RY ++S+ +L++ S + L+ I+ + P + I +++ D G +IDGFPR + +A+ FE +IC VV+ C + + LL+R + + +A ++ L +F P++ + +K + ++ R ED +F + VD + K + P D +I++ + + D+ Q+ G+ + G + E L+ K+IF+ G PG+GK TQC+K+ E +G+ H+S +LR E+ + +ER I + ++ + VP + ++L EAM+ G G+L++GYP V+Q F +V+ + C + R L R + DT + +RL+ Y ++P++ + K L K I G PE++F ++
Sbjct: 134 IILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTGELAPQETTITEIKQKLMQIPDEEGIVIDGFPRDVAQALSFEDQICTPDLVVFLACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRDEDEVFYDISMAVDNKLFPNKEAAAGSSDLDPSMILD----TGEIIDTGSDYEDQGDD-QLNVFGEDTMGG---------------------FMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHK-INAEGTPEDVFLQL 554 The following BLAST results are available for this feature:
BLAST of TCONS_00067381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.