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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067367 ID=TCONS_00067367|Name=TCONS_00067367|organism=Clytia hemisphaerica|type=transcript|length=2694bp
TAGAATTGAGCAACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTA
AAGGACCTAACAAAGACACATTGGAACTTGCCAGAGCCTGTTTCCATCTT
CTTTGGACGAGAAAGTTTGATTAAATCCATTCACTTGAAACTTCAACAAA
ATCAAGCAGTTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACC
GCTGCAAAGTTCGTTCAAATACACAAGGATGAATATCAGAAGATATTTTG
GATTTCTGCTGTCAGCCTCAAGAGATCTCTGAACGAGATTTTGTGTGCAT
TTGGTTGTAAACAACTAATACCTGATGAACCTTCGATGGAAACTCTTGCT
TTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCCAAGGATCGCTAGTTGT
ATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCATTCATTCGaa
atgtgaaagaaaaaatcagcTTATTGTTGACATCTCAATTGAGGGATTGG
GAAGATTATGATTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGA
ATCCATGGGCTTCTTACAGAATGAACTTTCTTCAGCCAGCCAACATGACA
TCTCCTTTTTAGCGAGTCGTTTACAATCATTACCTTTAGCCCTTCACCAA
GCCATTTGTTACATCAAGAAACATAAAGTTCCTCTACACAAATACATCGA
ACAATTCGAAGTTTGCAGAGAAATTGTTTTGGGAATGAAAATCAATTCTT
TTACTGAATATGACAAAACATTGTTGACAGTTTGGGATTTGGCTTTTGAG
AAAATTCGGGTCGAATCAAAGAATGCTCTTTTGTTCTTGGGAATGATGGC
TTTCATGGACaatcgaaaaatcaataaaaagacaTTCAGCTATTTTGATA
AAGTTGACGAATTTGAATTAAATGANAAGAATGCTCTTTTGATCTTGGGA
ATGATGGCTTTCATGGACaatcgaaaaatcaataaaaagacaTTCAGCTA
TTTTGATAAAGTTGACGAATTTGAATTAAGTGAAATCATCAATCTGCTTT
GTCAATATTCATTGGTCAACGAGCGGAACGAATATTTAGAAATTCACAGT
CTTGTGCAAAAAGTTATCCGATATCGTATTGAACAAAAACAATTTGTTAA
GGACGAATGTCCGTTGACACTTCTTGAAGGTGTTCTTTTGAAAATCAAGT
CTTCTGTTGCGGTTTTGGGATTAAATGCTGACTGTGAAGATTTATGGTAC
ATCCATGTTTTTCGTTTGATCATGAGTGGTGCACTCAAAACTATCAACTT
TGATGTTTCCCTTGTGTTAAATATCGCCATAGGCAGAATGGAGATGGAAA
ACTTTTACCAAATTTCTGAACttcttttaaaagttttgtttaaaCAATAT
AGGTTGTTTCGAGATGTGGAAACTTTTCACACGTTGTTGCTTGTTCATCA
TCGTTTCATAAACGCGTCAATTAATTTAGGTTTGCTTAATTTGAATGaga
tttttgcttttgaagAAGAGTTTTCCTCAGAGCTTGAAGAACattttgaa
gaagtttaccAGTGGAAGCTACAGCAAGCTGAGGTATATAATGTACATGG
ACGAGTGTCGTTATTCAATGATATCGTTCGAAATTTATTTAATGAACTTG
TCAAGAAGAAAGGATTTGataatattaaattaaaattggcGAGACATCTC
ACTGCAAGGGATGTTGAAGTTTTGTTGATTTCCGTTGACACAAATAATCT
CAGTGACGAGGAATTTTTGATGTATTATGATGCAAAATGTTCTTTATACA
TCCAGAATGGTTGCTTTGATTTAGCTGAACAAACCATGAACGATTGGAAA
GAACATATACAAAGACAAACATTTTCTCGAATATGGCACTTTAACTTGAC
AAAAAGGAATTGCTTTTTACTTTACAAGAAAGGAAATTACAACGAAGCGC
TTCTTGCATGCGATGTTCTTAAACCAGACATTGTTTTTACTGGTGCAAAT
GTTTTCATTTGGGAAGCAttgattttgatcaaattaGGAAAGTTCAACGA
TGCAGAAGTGTTACTTGATGACCTTGACCAACACAATAAGATTACCATTG
AAATCAGTTCATACCTGAAATTTCGAAAGCATGACTTTGAAGCAGTAGAA
AATTTCCTAATCGATGGGGAAGATGAGCGTCagtcaaatcttttgttttc
ggTAAAGGAATATGCGAAACTGCATCGACAACTCAAAAATAATAAATCGA
AAGAATTGGTTGAACAATGTCTGCAAATGAAGAAAAGTATAACTAAGTTC
TTTGAAGAAGATTTAAATTCGATTCGTTTTTGAAATGCAATTTTATCAAA
TTGTGATTAGAATCGCATGTTTGGGAATTACTCCAActtttggctaaaat
ttttaACTGACTGCAATGTAATTGTTGTATTGACTTGGCCTGGAAAAGCA
GAAATGgaagtgtttttattttaattatgaAAATATTCTAAGGGGtgttt
tcagggggtacccgattccgccaTTCGGTCTAAATTTTGTCCAATTTCTG
TCACACCGTCAAGTTCAAGTCTGAAATTCCACCACCGAAAATTTCCAATG
AAATTGAttcttttctccaaaattccagaattttgactttttggtgTAAA
TTCCGAAATTTCGAACGATTATTTGCCAAATTCCATTTTTTCGG Run BLAST on NCBI transcript from alignment at scaffold_469:548661..552172+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067367 ID=TCONS_00067367|Name=TCONS_00067367|organism=Clytia hemisphaerica|type=transcript|length=3512bp|location=Sequence derived from alignment at scaffold_469:548661..552172+ (Clytia hemisphaerica)
TAGAATTGAGCAACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTA
AAGGGTAAAGCTTTAGctatgatttttattttctctatccacgcttatta
ttatttttattatgtaAAAGGAATGTTGCTGAATAAAAAGGCCTTTTCTG
ACGAGTATCATCTTTTTAATAGAATTGAGCAACAAAGTTGACCAGCTATC
AGTGGAATCAAAATCTGTAaagggtaaagttttagttATGATTCTCATTT
TTAATATCCATTCTTAAACTTAAAACTCGCACCGATGAACAATACCggta
aaactttacaaattcaATCAATCTATTCAAAAAAATGACCTTCTTTTCTT
TGTTGGACATAACTTTagggaggtcctataaattaaccttgtTATGTtag
tccgtccgtctgttataagcttttctcgggattagCTCAttagatttttg
tgatttttcgcACAATGATTTGAAATGGTAATTCCCAAAATGTGGTGGAG
CCCGactttcgaaaaagaaaattctCCCAGTTGCCAGATCCTGAAGTGTc
acggaaaaaagtttttcagaattttctggagaatttattattagtttttt
ctattttttgtacATAGATGCGTATTAATACTGCTATCAATGTGTCTTAC
TTACTTGATAATTTCTTTATCGTCGAGATGCCCAAAGCTTAGCATCGTTT
GGTTTCCTAAGAAATCATCTTTAATCCCGGaaggaactccttaaaaattg
CTGGAACAGCCAAAAACCGGCGTAAAGCGGGTTTCCTTCACTATTTCGAG
AATATCAGGTATATAAAGTGTCACTTGTTGCACTTTTGAACCTTaagaaa
tatttatttgtaTTCCTTCCAGACCTAACAAAGACACATTGGAACTTGCC
AGAGCCTGTTTCCATCTTCTTTGGACGAGAAAGTTTGATTAAATCCATTC
ACTTGAAACTTCAACAAAATCAAGCAGTTGCTTTGAGTGAAATGGGAGGT
GTGGGGAAAACACAAACCGCTGCAAAGTTCGTTCAAATACACAAGGATGA
ATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAGATCTCTGA
ACGAGATTTTGTGTGCATTTGGTTGTAAACAACTAATACCTGATGAACCT
TCGATGGAAACTCTTGCTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTC
CCAAGGATCGCTAGTTGTATTGGATGACGTCACTGAGGTCACAAAAGACG
TCACTTCATTCATTCGaaatgtgaaagaaaaaatcagcTTATTGTTGACA
TCTCAATTGAGGGATTGGGAAGATTATGATTTGATTCAAATTGCTGTTCC
ATGTTTCCAAGAACAAGAATCCATGGGCTTCTTACAGAATGAACTTTCTT
CAGCCAGCCAACATGACATCTCCTTTTTAGCGAGTCGTTTACAATCATTA
CCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAGAAACATAAAGTTCC
TCTACACAAATACATCGAACAATTCGAAGTTTGCAGAGAAATTGTTTTGG
GAATGAAAATCAATTCTTTTACTGAATATGACAAAACATTGTTGACAGTT
TGGGATTTGGCTTTTGAGAAAATTCGGGTCGAATCAAAGAATGCTCTTTT
GTTCTTGGGAATGATGGCTTTCATGGACaatcgaaaaatcaataaaaaga
caTTCAGCTATTTTGATAAAGTTGACGAATTTGAATTAAATGANAAGAAT
GCTCTTTTGATCTTGGGAATGATGGCTTTCATGGACaatcgaaaaatcaa
taaaaagacaTTCAGCTATTTTGATAAAGTTGACGAATTTGAATTAAGTG
AAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCGGAACGAA
TATTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGTATTGA
ACAAAAACAATTTGTTAAGGACGAATGTCCGTTGACACTTCTTGAAGGTG
TTCTTTTGAAAATCAAGTCTTCTGTTGCGGTTTTGGGATTAAATGCTGAC
TGTGAAGATTTATGGTACATCCATGTTTTTCGTTTGATCATGAGTGGTGC
ACTCAAAACTATCAACTTTGATGTTTCCCTTGTGTTAAATATCGCCATAG
GCAGAATGGAGATGGAAAACTTTTACCAAATTTCTGAACttcttttaaaa
gttttgtttaaaCAATATAGGTTGTTTCGAGATGTGGAAACTTTTCACAC
GTTGTTGCTTGTTCATCATCGTTTCATAAACGCGTCAATTAATTTAGGTT
TGCTTAATTTGAATGagatttttgcttttgaagAAGAGTTTTCCTCAGAG
CTTGAAGAACattttgaagaagtttaccAGTGGAAGCTACAGCAAGCTGA
GGTATATAATGTACATGGACGAGTGTCGTTATTCAATGATATCGTTCGAA
ATTTATTTAATGAACTTGTCAAGAAGAAAGGATTTGataatattaaatta
aaattggcGAGACATCTCACTGCAAGGGATGTTGAAGTTTTGTTGATTTC
CGTTGACACAAATAATCTCAGTGACGAGGAATTTTTGATGTATTATGATG
CAAAATGTTCTTTATACATCCAGAATGGTTGCTTTGATTTAGCTGAACAA
ACCATGAACGATTGGAAAGAACATATACAAAGACAAACATTTTCTCGAAT
ATGGCACTTTAACTTGACAAAAAGGAATTGCTTTTTACTTTACAAGAAAG
GAAATTACAACGAAGCGCTTCTTGCATGCGATGTTCTTAAACCAGACATT
GTTTTTACTGGTGCAAATGTTTTCATTTGGGAAGCAttgattttgatcaa
attaGGAAAGTTCAACGATGCAGAAGTGTTACTTGATGACCTTGACCAAC
ACAATAAGATTACCATTGAAATCAGTTCATACCTGAAATTTCGAAAGCAT
GACTTTGAAGCAGTAGAAAATTTCCTAATCGATGGGGAAGATGAGCGTCa
gtcaaatcttttgttttcggTAAAGGAATATGCGAAACTGCATCGACAAC
TCAAAAATAATAAATCGAAAGAATTGGTTGAACAATGTCTGCAAATGAAG
AAAAGTATAACTAAGTTCTTTGAAGAAGATTTAAATTCGATTCGTTTTTG
AAATGCAATTTTATCAAATTGTGATTAGAATCGCATGTTTGGGAATTACT
CCAActtttggctaaaatttttaACTGACTGCAATGTAATTGTTGTATTG
ACTTGGCCTGGAAAAGCAGAAATGgaagtgtttttattttaattatgaAA
ATATTCTAAGGGGtgttttcagggggtacccgattccgccaTTCGGTCTA
AATTTTGTCCAATTTCTGTCACACCGTCAAGTTCAAGTCTGAAATTCCAC
CACCGAAAATTTCCAATGAAATTGAttcttttctccaaaattccagaatt
ttgactttttggtgTAAATTCCGAAATTTCGAACGATTATTTGCCAAATT
CCATTTTTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067367-exon-scaffold_469-1491911889:548661..548714 | TCONS_00067367-exon-scaffold_469-1491911889:548661..548714 | Clytia hemisphaerica | exon |
| TCONS_00067367-exon-scaffold_469-1510915933:548661..548714 | TCONS_00067367-exon-scaffold_469-1510915933:548661..548714 | Clytia hemisphaerica | exon |
| TCONS_00067367-exon-scaffold_469-1575043694:548661..548714 | TCONS_00067367-exon-scaffold_469-1575043694:548661..548714 | Clytia hemisphaerica | exon |
| TCONS_00067367-exon-scaffold_469-1491911889:549533..552172 | TCONS_00067367-exon-scaffold_469-1491911889:549533..552172 | Clytia hemisphaerica | exon |
| TCONS_00067367-exon-scaffold_469-1510915933:549533..552172 | TCONS_00067367-exon-scaffold_469-1510915933:549533..552172 | Clytia hemisphaerica | exon |
| TCONS_00067367-exon-scaffold_469-1575043694:549533..552172 | TCONS_00067367-exon-scaffold_469-1575043694:549533..552172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:548661..552172 + |
Blast
The following BLAST results are available for this feature:
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