|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067361 ID=TCONS_00067361|Name=TCONS_00067361|organism=Clytia hemisphaerica|type=transcript|length=2602bp
TAGAATTGAGCAACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTA
AAGGACCTAACAAAGACACATTGGAACTTGCCAGAGCCTGTTTCCATCTT
CTTTGGACGAGAAAGTTTGATTAAATCCATTCACTTGAAACAAAATCAAG
CAGTTGCATTGAGTGAAATGGGAGGTGTGGGGAAAACACAAATCGCTGCA
AAGTTCGTTCAAATACACAAAAATAAGGATGAATATCAGAAGATATTTTG
GATTTCTGCTGTCAGCCTCAAGAGATCTTTGAGCGAGATTTTGTGTGCAT
TTGGTTGGAAACAACTAATTCCTGATGAACCTTCGATGGAAAGTCTTGCT
TTCATTTTCCTCTCTAAGATTTGCGAAGGCTCCAAAGGATCGCTGGTTGT
ATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCATTCATTCGaa
atgtgaaagaaaaaatcagcTTATTGTTGACATCTCAATTGAAAGATTGG
GAAGGTTATGGTTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGA
ATCCATTGGTTTCTTACAGAATGAGCTTACTACAGCCAGCCATCAAGAAA
TCTCCATTTTAGCGAATCGTTTACAATCATTACCTTTAGCCCTTCACCAA
GCCATTTGTTACATCAGAAAACATAAAGTTCCTCTACACAAATACattaa
agaatttgaaaaatgcagTGAAAGTGTTTTGGGAATGAAGGGAATGAAAT
TTAATTCTTTTACTGAATATGACAAAACATTGTTGACAGTTTGGGATTTG
GCTTTTGCGAAGATTCGGGTCGAATCAAAGAATGCTCTTCTGATCTTGGG
AATGATGGCTTTCATGGACaatcgaaaaatcaataaaaagacaTTCAGCT
ATTTTGATAAAGTTGACGAATTTGAATTAAATGAAATAATCTCACTGCTT
GGTCAATATTCATTGGTCAACGAGTGGAAAGATTGTTTAGAAATTCACAG
TCTTGTGCAAAAAGTTATCCGATATCGCATTGAAAAAAAACAGTTTGTTG
AAGATGAAAGTCCGTTGACACTGCTTGAAGGTGTGCTTTTGAAAATTGAG
GGCTCCGTTGAAGATTTGGTTATAAATGCTGACCAGGAGGATTTATGGTA
CATTCATGTTTTTCATTTGATCATGAGTGGTGCACTCAAAACTATCAACT
TTGATGTTACCCAGGTGTTTACTATCGCCGTAGGCAAAATAGAGATGGAA
AAGTTGTACCAAATTTCTGAATTTCTATCAAAAGATTTGTTAAAACAATA
TAGGTGGTCTCGAGATGTGGAAACTTTTCACATGTTATTGCGTGTTCATT
ATCGTTTCATAGACGCGTCAATTAGATTAGGTTTACTTAATGTGAATGAA
ATTATTGCTTTTGAAGAAGAGTTTTCCTCAGAGCTTGAAGAGCATTCTGA
AGAAGTTTACTGGTGGAAGTTACAGCAAGCTGAGGCATATAATATACATG
GACGAGTGCAATGCAATGATATCGTTCAAAAATTATTCAATGAACTGGTC
AAGAAGAAAGGATTTGATGATATTAAATTAGGATTGGCGAGTTTTCTCAC
CGTAAGGGATGTTGAAGTTTTGTTGAATACCGTTGACACAAATAATCTCT
GTGACTTGGACTTTTTGGTTCATTATAATGCAAAATGTGATTTATACATC
AAGAACGGTTGCTTTGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGA
ACATTTACACAGAAAACAATTTTCTCGAATGTTGCActttaatttcacaa
aaaagaatTGCTATTTACTTTACAAGAAAGGACATTACAACGAAGCATTG
CTAGCTTGCGATGAacttaaatgtgatttttttactGATGCAGATATTTT
AGTATTCGAAGCAttgattttgatcaaattaAGAAAGTTCAACGACGCAG
AAATTTTACTTGACACCTTTGACCATCACAATAAGATTATTATTGAAATC
AGCTCATACCTGAAATTTCGAAAGCATGACTTTGAGGCAGTAAAGAATCT
CCTCGCCGAAAAGGAAGATGAGCGCCggtcaaatcttttgtttttggtAA
AGGAATATGCGAAACTGCATCGACAACTCGAAAATAATAAATCGAGAGAA
TTGGTTGAACAATGTTTGCAAATGAAAACATTTGTAAATAATATCTTTCA
AGTAGAATTGGATTCGATTGGtatttaaaatacaattttatcgATTTATG
ATTAGAATCGGATCTTTGGGAATTACTCAAACTTTTCGCTAAACTGATGA
GTTTTTCAATTGGTTGCAATGTAATTTTTGCATTGACTTGGCCCGTAAAA
CCATGGCCCCCGGCGTGTAAAAaaagtgagggggccaaaaaaaattaaaa
atgtcgtccaccatggttgggcgacgaagaaaatttttcgtttttaaCCC
TTATTTTGCCCCTAAAACGGTATATTTAAGCATAAGCAGTTATCTcaatt
tctgacgaaatataaatagtcgcgtctatTTCTCACCATTACTTCATTGC
CCAAagccaaaagaatctttttcacttaaactgatataacattcaatttt
gg Run BLAST on NCBI transcript from alignment at scaffold_469:540596..544017+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067361 ID=TCONS_00067361|Name=TCONS_00067361|organism=Clytia hemisphaerica|type=transcript|length=3422bp|location=Sequence derived from alignment at scaffold_469:540596..544017+ (Clytia hemisphaerica)
TAGAATTGAGCAACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTA
AAGGGTAAAGCTTTAGctatgatttttattttctctatccacgcttatta
ttatttttattatgtaAAAGGAATGTTGCTGAATAAAAAGGCCTTTTCTG
ACGAgtatcattctttttaatagaATTGAGCAACAAAGTTCACCAGCTAT
CAGTGGAATCAAAATCTGTAAAGGGTAAAGCTTTAGCTATGATTCTCATT
TTTACTATCCATTCTTTAACTTAAAACTCGCACCGATGAACAATACCGGT
AAACCTTTACAAATTCAATCAATCCATTCAAAAAGAAATGACCTTCTTTG
TTGGATATAACTTTAGGGagatcctataaattaaccttgtTATGTtagtc
cgtccgtctgttataagcttttctcgggacttgctcattagatttttctg
attattttttcGCACAATGATTTGAAATGGTAattcccaaaatgtgacgg
agcccgaatttcgaaaaagaaaattctCCCAGTTGCCAGATCCTGAAGTG
Tcacggaaaaaagtttttcagaattttctggagaatttattattagtttt
ttctattttttgtacATAGATGCGTATTAATACTGCTATCAATGTGTCTT
ACTTACTTGATAATTTCTTTATCATCGAGATGCCCAAAGCTTAGCATCGT
TTGGTTTCCTAAGAAGTCATATTTAATTCCGGAAGGAACTCCTTAAGAAT
TGCTGGAACAGCCAAAAACCGGCTTAAAGCGGGTTACCTTCACTATTTCG
AGAATATCAGTTATATAAAGTGTCACTTGTTGCTCTTTTGAACCTTaaga
aatatttatttgtaTTCCTTCCAGACCTAACAAAGACACATTGGAACTTG
CCAGAGCCTGTTTCCATCTTCTTTGGACGAGAAAGTTTGATTAAATCCAT
TCACTTGAAACAAAATCAAGCAGTTGCATTGAGTGAAATGGGAGGTGTGG
GGAAAACACAAATCGCTGCAAAGTTCGTTCAAATACACAAAAATAAGGAT
GAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAGATCTTT
GAGCGAGATTTTGTGTGCATTTGGTTGGAAACAACTAATTCCTGATGAAC
CTTCGATGGAAAGTCTTGCTTTCATTTTCCTCTCTAAGATTTGCGAAGGC
TCCAAAGGATCGCTGGTTGTATTGGATGACGTCACTGAGGTCACAAAAGA
CGTCACTTCATTCATTCGaaatgtgaaagaaaaaatcagcTTATTGTTGA
CATCTCAATTGAAAGATTGGGAAGGTTATGGTTTGATTCAAATTGCTGTT
CCATGTTTCCAAGAACAAGAATCCATTGGTTTCTTACAGAATGAGCTTAC
TACAGCCAGCCATCAAGAAATCTCCATTTTAGCGAATCGTTTACAATCAT
TACCTTTAGCCCTTCACCAAGCCATTTGTTACATCAGAAAACATAAAGTT
CCTCTACACAAATACattaaagaatttgaaaaatgcagTGAAAGTGTTTT
GGGAATGAAGGGAATGAAATTTAATTCTTTTACTGAATATGACAAAACAT
TGTTGACAGTTTGGGATTTGGCTTTTGCGAAGATTCGGGTCGAATCAAAG
AATGCTCTTCTGATCTTGGGAATGATGGCTTTCATGGACaatcgaaaaat
caataaaaagacaTTCAGCTATTTTGATAAAGTTGACGAATTTGAATTAA
ATGAAATAATCTCACTGCTTGGTCAATATTCATTGGTCAACGAGTGGAAA
GATTGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCGCAT
TGAAAAAAAACAGTTTGTTGAAGATGAAAGTCCGTTGACACTGCTTGAAG
GTGTGCTTTTGAAAATTGAGGGCTCCGTTGAAGATTTGGTTATAAATGCT
GACCAGGAGGATTTATGGTACATTCATGTTTTTCATTTGATCATGAGTGG
TGCACTCAAAACTATCAACTTTGATGTTACCCAGGTGTTTACTATCGCCG
TAGGCAAAATAGAGATGGAAAAGTTGTACCAAATTTCTGAATTTCTATCA
AAAGATTTGTTAAAACAATATAGGTGGTCTCGAGATGTGGAAACTTTTCA
CATGTTATTGCGTGTTCATTATCGTTTCATAGACGCGTCAATTAGATTAG
GTTTACTTAATGTGAATGAAATTATTGCTTTTGAAGAAGAGTTTTCCTCA
GAGCTTGAAGAGCATTCTGAAGAAGTTTACTGGTGGAAGTTACAGCAAGC
TGAGGCATATAATATACATGGACGAGTGCAATGCAATGATATCGTTCAAA
AATTATTCAATGAACTGGTCAAGAAGAAAGGATTTGATGATATTAAATTA
GGATTGGCGAGTTTTCTCACCGTAAGGGATGTTGAAGTTTTGTTGAATAC
CGTTGACACAAATAATCTCTGTGACTTGGACTTTTTGGTTCATTATAATG
CAAAATGTGATTTATACATCAAGAACGGTTGCTTTGATTTGGCTGAACAA
GTCATGAAGAATTGGAAAGAACATTTACACAGAAAACAATTTTCTCGAAT
GTTGCActttaatttcacaaaaaagaatTGCTATTTACTTTACAAGAAAG
GACATTACAACGAAGCATTGCTAGCTTGCGATGAacttaaatgtgatttt
tttactGATGCAGATATTTTAGTATTCGAAGCAttgattttgatcaaatt
aAGAAAGTTCAACGACGCAGAAATTTTACTTGACACCTTTGACCATCACA
ATAAGATTATTATTGAAATCAGCTCATACCTGAAATTTCGAAAGCATGAC
TTTGAGGCAGTAAAGAATCTCCTCGCCGAAAAGGAAGATGAGCGCCggtc
aaatcttttgtttttggtAAAGGAATATGCGAAACTGCATCGACAACTCG
AAAATAATAAATCGAGAGAATTGGTTGAACAATGTTTGCAAATGAAAACA
TTTGTAAATAATATCTTTCAAGTAGAATTGGATTCGATTGGtatttaaaa
tacaattttatcgATTTATGATTAGAATCGGATCTTTGGGAATTACTCAA
ACTTTTCGCTAAACTGATGAGTTTTTCAATTGGTTGCAATGTAATTTTTG
CATTGACTTGGCCCGTAAAACCATGGCCCCCGGCGTGTAAAAaaagtgag
ggggccaaaaaaaattaaaaatgtcgtccaccatggttgggcgacgaaga
aaatttttcgtttttaaCCCTTATTTTGCCCCTAAAACGGTATATTTAAG
CATAAGCAGTTATCTcaatttctgacgaaatataaatagtcgcgtctatT
TCTCACCATTACTTCATTGCCCAAagccaaaagaatctttttcacttaaa
ctgatataacattcaattttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067361-exon-scaffold_469-1491911889:540596..540649 | TCONS_00067361-exon-scaffold_469-1491911889:540596..540649 | Clytia hemisphaerica | exon |
| TCONS_00067361-exon-scaffold_469-1510915933:540596..540649 | TCONS_00067361-exon-scaffold_469-1510915933:540596..540649 | Clytia hemisphaerica | exon |
| TCONS_00067361-exon-scaffold_469-1575043694:540596..540649 | TCONS_00067361-exon-scaffold_469-1575043694:540596..540649 | Clytia hemisphaerica | exon |
| TCONS_00067361-exon-scaffold_469-1491911889:541470..544017 | TCONS_00067361-exon-scaffold_469-1491911889:541470..544017 | Clytia hemisphaerica | exon |
| TCONS_00067361-exon-scaffold_469-1510915933:541470..544017 | TCONS_00067361-exon-scaffold_469-1510915933:541470..544017 | Clytia hemisphaerica | exon |
| TCONS_00067361-exon-scaffold_469-1575043694:541470..544017 | TCONS_00067361-exon-scaffold_469-1575043694:541470..544017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:540596..544017 + |
Blast
The following BLAST results are available for this feature:
|
