|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067357 ID=TCONS_00067357|Name=TCONS_00067357|organism=Clytia hemisphaerica|type=transcript|length=2150bp
tagaCCTTGAATGATGATCATACCTCTCTATTATAGAAATATTTATTTCa
gttattttaaaaatgaattcaaaatatcatcaaaaataCTTCGATAAAGT
TGGTATTGTACACTGTGGTGATAAGAAGTCCAAACAACTGGTGGATCGTT
NGTTGGTATTGTACACTGTGGTGATAAGAAGTCCAAGCAACTGGTGGATC
GTTTGATGAAGAATATCGCACAAAAAGATTATCTCAACGAGACAACGTTT
ACCAgcaaagattttcataccagcAACAATGTCCCGTTGTTAGTCAGCAT
GACTCTGGCAACTTTCAAAGAATCTAGACTACCCTTACTAGTGATTCTTA
CTAAAGACTTTTTCCACAAGATCTGGACAGATCAATTGAAGATTGGAATT
CAACAAATGTTGCTTGGATATTCAAGTCATTTTTGTTTACATATCTGGAT
GGATGACTTGGACAGTACTGAGGTCAGGAAGTGGAGTACCGGCCTTCTCA
GAAACGATTCTTCCTTCAGAAGAGTCAAGTACCAAGACTTGCAATATACT
actgataaagaactaaaagaACAGATCATTGCTTTGATTAGagACAATAC
AGATAGAGAAGCaaagtatcgaaattattcagTACAAGACCAAGACGCAT
TGAACTTCACCGATTTAGCGTTGAAATCATTATCCATCAAATCAAAGGAC
ACAGCAGAGGGCTCACCACCGACAAGCATAACATCTGTTCCTTCGTCCTC
AAGcaagaaacgaaagaaaaagaagaaccaATCTGCCAACCAGTATTTAA
GAGGAGCGGCTGCATTCCCCAAAGCGAAAGTACCAAAAGAGACAACTCGA
TTGAGGGATTTATCACTGGATCAACGAGACAGAATAACGACCTTACTGGA
TGTTGGGTACGGTGCCAACTGGAAACAAATTGGTCATTTCTATCAACTAA
CACCCGCTGAATTCCGTGTCATTGAAACGGCGGGCCATGCTGGTCAACGA
CCGGCTGATTGTTTGTTGAGATTGTTGTTGGCGAAAATGCCTGATTTGAG
TTTGCAGGATTTAAAGGAGAAATGTCAGCGAATTTTAAGGAGGGATGTTA
TCGAAATCATCGATGAATTGATGGGGAGCTAGAGGTCGTTATTTCGAAAG
CTTTGTAAAGCGTTTAAAAGAAGTCATTACTGAGGAATTGGGAGGATTCA
AAATGACAGGCAGTTTGTGGAGGTACCTGTGTTTGAGATGAGGAGGCGTG
CGAGACGCAGAAGACAGACACCTCTAAAGTTTCTGGATGACTTGCTTTAA
ACGTCCAAATCAGTATGTAACCAAGATAACTGTGCGGAATAAAAGAATAT
TCTGCTAAGTCAGCAGAAATGTAGTCGAGTCTGTCAAGAGCTGTGGTaga
aaggcaaaatttttatttctcttGAAATATTTGATACAAACACGAGGTTC
GAAATCTAAAATCTAATATCAAACGAACTATAGTATATATAATTATATTA
agagatttttaattttttatagcAATGTAATATTTAatgtaaaggcttgg
ggacacgagaagtttttttcgcgttggtgcaatgcaatatGTTCCATCCC
AACaccacaagaaaaaaagtgcgtgtcccatagtttcttttattgtttca
tgggacaaaaagtgagggaaatacccaaaagacattgattttgtccctgg
gacaatggagcaaaatattattcaaatcaattttactccattgtcccagg
gacaaaagtgagttgcattgcaccaacatgaaaaaaacttctcgggTCCC
CAAGCCTTTTATAAAGGAAGGCCTTATAATAATTTTAATGAAGCACGTAT
TCTTCCTCTTAGTTACCGTATTCAGCCTAGCTGTATAAACAAACTTActg
gaaatttattttgataaaagttttgacAGATCGCCTACTTTGTGTGTACG
ACCTTTATGATTTGTCTCTCCTTTGTCATTTTAGTATGTAACAGATGTTA
GGGTTGACCCACCAAACTCTATAACAACCTTGTTTCACAGCCCAgaggaa
ctttttcccacagtggggaaTGTTCTAAGCTCTAAAAATTTGGTCCAAAG
GATGGTccaattagtttttttattgtcaatttccagaggggggggggggN Run BLAST on NCBI transcript from alignment at scaffold_469:531810..535952+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067357 ID=TCONS_00067357|Name=TCONS_00067357|organism=Clytia hemisphaerica|type=transcript|length=4143bp|location=Sequence derived from alignment at scaffold_469:531810..535952+ (Clytia hemisphaerica)
tagaCCTTGAATGATGATCATACCTCTCTATTATAGAAATATTTATTTCa
gttattttaaaaatgaattcaaaatatcatcaaaaataCTTCGATAAAGG
TATTGAATCTCTTTCAAGttgataaaattttctcttttgcatttctttta
atttgattaTTCTAAACTGCCTGGCTTGTACTCGATATCGAAACAATATT
TATAGGCCTTATAGTTTATTCACAGATTAAAACCAAGAAATCCAAATTTA
GCTTAACGTACTCTCTTAGTTttacattttgattttattaaacCTTTGCT
CATCCTTGAATTCTATAAACCTTCTATAAACCTCTGAGCCATTTTACTTG
TGATATCAAGTTCCTCATAAATCTTTCTCATACGTTTTTCTCGGAGctct
tcaatattttcattcctGTTAATAGTTGGTATTGTACACTGTGGTGATAA
GAAGTCCAAACAACTGGTGGATCGTTNGTTGGTATTGTACACTGTGGTGA
TAAGAAGTCCAAGCAACTGGTGGATCGTTTGATGAAGAATATCGCACAAA
AAGATTATCTCAACGAGACAACGTTTACCAgcaaagattttcataccagc
AACAATGTCCCGTTGTTAGTCAGCATGACTCTGGCAACTTTCAAAGAATC
TAGACTACCCTTACTAGTGATTCTTACTAAAGACTTTTTCCACAAGATCT
GGACAGATCAATTGAAGATTGGAATTCAACAAATGTTGCTTGGATATTCA
AGTCATTTTTGTTTACATATCTGGATGGATGACTTGGACAGTACTGAGGT
CAGGAAGTGGAGTACCGGCCTTCTCAGAAACGATTCTTCCTTCAGAAGAG
TCAAGTACCAAGACTTGCAATATACTactgataaagaactaaaagaACAG
ATCATTGCTTTGATTAGaggtattcaattttttttttaagaggaCTTCAT
CATTTTTCTAAGTGGAATATTTCAGGCTTGGACAAAGGCAAAATCAAACT
TTTATTATAACTCATGGAGATTCctaaaaacaagaaatttcCGCAGGAAG
AAACATTCGCTGCTTTCACgaaattgcaaaagtttattACGCGAGAGATT
CTTTTGACAGACTGATTCGAGAATAGTTAAAGTTTTCGTGTTTGTGAAAA
ACTCCTTCTCTTAGAATCTTACCTAggccatgaaattttcttaaaagcaa
CTGAAATCGTATGGGAGTTTTTTCtaggaaaaaattttgaaaaggacTAT
TCTTACAATGGATTTGAATAGGTTGATTAAAAAAACTCGTACAAAGCAAT
CCTCTTTTGTCAGGTAATCACCATTTTTTCTGGCAATTAAGTTCGGTAAG
TTTTGAGAAATGTTGTGAAAATCATTActttgaagtcgaaaatttcacCT
AAAGTTTATactgcatgggaaaaacaagaagtagagatggaagctaatct
gaaatctactttacattgagccttgatgaaacaattttataagaacaacg
aggctcaaaatcgataaaaaagttaaccaatttaagaacaatggttgttt
aattcttttaagaactaataaccgaaGGCGGTTATAGACGGTGATatcgt
ctatcaagagttattaatttgattcttataaagtatatgcttataagaaa
aataaatatgctcatattgtgtgccatcccttgtttactttataagaact
aataaccgaagtgtatatcaccgtctatcaagagttattgatttgattct
tataaagtatatgcttatgagaaaaatgaatatgctcatattgtgcgcca
tcccttgtttacttcgtaagaactaattaccgaaaggtatatcaccgtct
atcaagaattattgatttgattcttataaagtatacgcttataagaaaaa
taaatatgcttatattgtgcgccatcccttgtttactttgtaaaaactaa
ttcccgaagggtatatcatcgtctatcgagagttattgatttgattctta
taaagtatacgcttataagaaaataaagaaaaagactaaagacacaaaga
tatatgacgtaatctaaagaaaacccgcgaaaatcgtccgtggttatacg
agcgtgtaatttgtaaatcaattttagtgagttcgtccaccgcatcgagt
actttcgttttctaattttttttcctcaccgccgccgccgcagaatgctg
attgtaatactttcgttaaggcgaaattaaaaaaCGATCTTATAAAACTA
ACTGCTGAAAACTACACGAGTAGTGCATAAATCTGCATAAATTCATTTAG
AGATATTTTCGTGACAAtaagaagacaatggatctctcttgggagcaata
AGAGAGCTTAATCCATCTATTCCAATCCGATAATTCGTGAAAGTTAGTCA
CCGCGAATTGcagaaatttcgcgaatttctccATTCGTTTCATCTCCTTA
AGTATTGAATTTTCTATATGATCTTTACTTCATTTTCCTATAATTATTTT
AAGTAAATGTCCCCGAAAATTTTGTCTCCAGAAATACTATGTGTCCCTTT
TTCAATCATAATTTGataattcatcattttttcaaGACAATACAGATAGA
GAAGCaaagtatcgaaattattcagTACAAGACCAAGACGCATTGAACTT
CACCGATTTAGCGTTGAAATCATTATCCATCAAATCAAAGGACACAGCAG
AGGGCTCACCACCGACAAGCATAACATCTGTTCCTTCGTCCTCAAGcaag
aaacgaaagaaaaagaagaaccaATCTGCCAACCAGTATTTAAGAGGAGC
GGCTGCATTCCCCAAAGCGAAAGTACCAAAAGAGACAACTCGATTGAGGG
ATTTATCACTGGATCAACGAGACAGAATAACGACCTTACTGGATGTTGGG
TACGGTGCCAACTGGAAACAAATTGGTCATTTCTATCAACTAACACCCGC
TGAATTCCGTGTCATTGAAACGGCGGGCCATGCTGGTCAACGACCGGCTG
ATTGTTTGTTGAGATTGTTGTTGGCGAAAATGCCTGATTTGAGTTTGCAG
GATTTAAAGGAGAAATGTCAGCGAATTTTAAGGAGGGATGTTATCGAAAT
CATCGATGAATTGATGGGGAGCTAGAGGTCGTTATTTCGAAAGCTTTGTA
AAGCGTTTAAAAGAAGTCATTACTGAGGAATTGGGAGGATTCAAAATGAC
AGGCAGTTTGTGGAGGTACCTGTGTTTGAGATGAGGAGGCGTGCGAGACG
CAGAAGACAGACACCTCTAAAGTTTCTGGATGACTTGCTTTAAACGTCCA
AATCAGTATGTAACCAAGATAACTGTGCGGAATAAAAGAATATTCTGCTA
AGTCAGCAGAAATGTAGTCGAGTCTGTCAAGAGCTGTGGTagaaaggcaa
aatttttatttctcttGAAATATTTGATACAAACACGAGGTTCGAAATCT
AAAATCTAATATCAAACGAACTATAGTATATATAATTATATTAagagatt
tttaattttttatagcAATGTAATATTTAatgtaaaggcttggggacacg
agaagtttttttcgcgttggtgcaatgcaatatGTTCCATCCCAACacca
caagaaaaaaagtgcgtgtcccatagtttcttttattgtttcatgggaca
aaaagtgagggaaatacccaaaagacattgattttgtccctgggacaatg
gagcaaaatattattcaaatcaattttactccattgtcccagggacaaaa
gtgagttgcattgcaccaacatgaaaaaaacttctcgggTCCCCAAGCCT
TTTATAAAGGAAGGCCTTATAATAATTTTAATGAAGCACGTATTCTTCCT
CTTAGTTACCGTATTCAGCCTAGCTGTATAAACAAACTTActggaaattt
attttgataaaagttttgacAGATCGCCTACTTTGTGTGTACGACCTTTA
TGATTTGTCTCTCCTTTGTCATTTTAGTATGTAACAGATGTTAGGGTTGA
CCCACCAAACTCTATAACAACCTTGTTTCACAGCCCAgaggaactttttc
ccacagtggggaaTGTTCTAAGCTCTAAAAATTTGGTCCAAAGGATGGTc
caattagtttttttattgtcaatttccagaggggggggggggN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067357-exon-scaffold_469-1491911889:531810..531908 | TCONS_00067357-exon-scaffold_469-1491911889:531810..531908 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1510915933:531810..531908 | TCONS_00067357-exon-scaffold_469-1510915933:531810..531908 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1575043694:531810..531908 | TCONS_00067357-exon-scaffold_469-1575043694:531810..531908 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1491911889:532235..532728 | TCONS_00067357-exon-scaffold_469-1491911889:532235..532728 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1510915933:532235..532728 | TCONS_00067357-exon-scaffold_469-1510915933:532235..532728 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1575043694:532235..532728 | TCONS_00067357-exon-scaffold_469-1575043694:532235..532728 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1491911889:534396..535952 | TCONS_00067357-exon-scaffold_469-1491911889:534396..535952 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1510915933:534396..535952 | TCONS_00067357-exon-scaffold_469-1510915933:534396..535952 | Clytia hemisphaerica | exon |
| TCONS_00067357-exon-scaffold_469-1575043694:534396..535952 | TCONS_00067357-exon-scaffold_469-1575043694:534396..535952 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:531810..535952 + |
Blast
The following BLAST results are available for this feature:
|
