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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067354 ID=TCONS_00067354|Name=TCONS_00067354|organism=Clytia hemisphaerica|type=transcript|length=5892bpRun BLAST on NCBI protein sequence of TCONS_00067354-protein >TCONS_00067354-protein ID=TCONS_00067354-protein|Name=TCONS_00067354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp MPIQAPQWTDFRLCPVCQNEYNQTQKPPISLGCGHSICQSCLFQLSKQQCRun BLAST on NCBI transcript from alignment at scaffold_469:497489..511466+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067354 ID=TCONS_00067354|Name=TCONS_00067354|organism=Clytia hemisphaerica|type=transcript|length=13978bp|location=Sequence derived from alignment at scaffold_469:497489..511466+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_469:497489..511466+ >TCONS_00067354 ID=TCONS_00067354|Name=TCONS_00067354|organism=Clytia hemisphaerica|type=CDS|length=39480bp|location=Sequence derived from alignment at scaffold_469:497489..511466+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067354 vs. Swiss-Prot (Human)
Match: RC3H2 (Roquin-2 OS=Homo sapiens GN=RC3H2 PE=1 SV=2) HSP 1 Score: 567 bits (1460), Expect = 3.838e-174 Identity = 280/455 (61.54%), Postives = 341/455 (74.95%), Query Frame = 3
Query: 117 MPIQAPQWTDFRLCPVCQNEYNQTQKPPISLGCGHSICQSCLFQLSKQQCPFDQAEIQIAIKKLPINYALLSLVGGKINDCVDSIDIEEVQQNKKEYSAAKKAIEILAQSLQNVVIXXXXXXXXXXXXXXXALTRPMQRKLVTLIHTQLAEDEGRSRALRAARSIGERAVKELILMHQNPQTLSTALWAAVRQRGCQFLGPAMQEAVLHLIVLSLEDGISLSRKVLVLFVVQRLEKQFTQASKTSIGHVVQLLYRASCFKVTKREGDSSLLQLQEKYRTYSALRKEHDAQIVQIAMEAGLHISPEQWSALLYGDDEHKSHMQSIIDKLQTPASFASSIQELVIALQRTNDPHNLQSLRQHLDKLSAIDPSPDAVLDSWEQLEECMESLSVAVTGLQSYSKEYASRNKGNLEGAQMINTKYRTSMCRDILQKNNCPRGSNCNFAHTEEELEKYRKR 1481
MP+QA QWT+F CP+C NE+++ PISLGC H++C++CL +L ++ CPFDQ I I LP+N+ALL LVG ++ D SI + + +NK Y AKK +E LA L+ + S S AL+RPMQRKLVTL++ QL E+EGR RA+RAARS+GER V ELIL HQNPQ LS LWAAVR RGCQFLGPAMQE L L++L+LEDG +LSRKVLVLFVVQRLE +F QASKTSIGHVVQLLYRASCFKVTKR+ DSSL+QL+E++R+Y ALR+EHDAQIV IAMEAGL ISPEQWS+LLYGD HKSHMQSIIDKLQ+P SFA S+QEL I LQRT DP NL LR HL+ L+ IDP+PDAV +WEQLE M ++ V GL + + Y+ KG+ N+KY+TSMCRD+ Q+ CPRG+NC FAH++EELEKYR R
Sbjct: 1 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFALLQLVGAQVPDH-QSIKLSNLGENK-HYEVAKKCVEDLALYLKPL-----SGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYS--RKGHETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLR 446 The following BLAST results are available for this feature:
BLAST of TCONS_00067354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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