TCONS_00067354-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067354-protein
Unique NameTCONS_00067354-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067354-protein ID=TCONS_00067354-protein|Name=TCONS_00067354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp
MPIQAPQWTDFRLCPVCQNEYNQTQKPPISLGCGHSICQSCLFQLSKQQC
PFDQAEIQIAIKKLPINYALLSLVGGKINDCVDSIDIEEVQQNKKEYSAA
KKAIEILAQSLQNVVISGTSSNNNSYSTGSGALTRPMQRKLVTLIHTQLA
EDEGRSRALRAARSIGERAVKELILMHQNPQTLSTALWAAVRQRGCQFLG
PAMQEAVLHLIVLSLEDGISLSRKVLVLFVVQRLEKQFTQASKTSIGHVV
QLLYRASCFKVTKREGDSSLLQLQEKYRTYSALRKEHDAQIVQIAMEAGL
HISPEQWSALLYGDDEHKSHMQSIIDKLQTPASFASSIQELVIALQRTND
PHNLQSLRQHLDKLSAIDPSPDAVLDSWEQLEECMESLSVAVTGLQSYSK
EYASRNKGNLEGAQMINTKYRTSMCRDILQKNNCPRGSNCNFAHTEEELE
KYRKRRNLSYNRPPPQMGHMPNGGPPPMMNGMAPNGMPPYPNSRASSSPD
SCINADLDDEIVEMTKITQVRTESFPPPQQHNPTMHRIPMGYMDQEGSPQ
QQQMDINNQMKNLSMNGHPPPNGPYTQPYANNQPNFSQPQVSPPQQPKKN
EQVMKLPPGYAASMPPQMPPQNIQPNAPPPRQPPSMYSPPIQQQAHYQPS
YYDMREPPMPQQPPPHAQVYLQSNQHPYVTNAQVYQPPPQQAPEFNGGYM
QYQQPNMDYPTFNSHFPHPMPIQRTAVGARGASNEDFKDLIKPTKSEFGN
LSISVKDDSDWKTGGGSSSTKSSAFDYIDSGRGSSSGYHSSSDAFSPISN
SSLGSRSSPPNMKPDSDCSKMFDNIWSLEPKSSGNGWTTGKTNGWDNLLD
TGNRMSDADDRNTSNESLGRSSEHQSTTLDDERSYTSFMNLSRSSSDLLN
NNTSSTANQNGSTSSANHDFMGLLSPTLTRRPPPGFGLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042088XLOC_042088Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067354TCONS_00067354Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107
NoneNo IPR availableGENE3D4.10.1000.10coord: 415..453
e-value: 3.9E-11
score: 42.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 832..884
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 896..939
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 755..819
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..645
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 9..58
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 419..446
e-value: 6.4E-4
score: 29.0
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 419..447
score: 15.554
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 417..450
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 14..53
e-value: 2.7E-6
score: 36.9
IPR001841Zinc finger, RING-typePFAMPF14634zf-RING_5coord: 14..52
e-value: 8.9E-7
score: 28.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 14..54
score: 11.486
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 14..52
e-value: 1.1132E-5
score: 42.818
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..164
e-value: 5.3E-10
score: 38.8
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 33..42

Blast
[Close]
BLAST of TCONS_00067354-protein vs. Swiss-Prot (Human)
Match: RC3H2 (Roquin-2 OS=Homo sapiens GN=RC3H2 PE=1 SV=2)

HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 280/455 (61.54%), Postives = 341/455 (74.95%), Query Frame = 0 
Query:    1 MPIQAPQWTDFRLCPVCQNEYNQTQKPPISLGCGHSICQSCLFQLSKQQCPFDQAEIQIAIKKLPINYALLSLVGGKINDCVDSIDIEEVQQNKKEYSAAKKAIEILAQSLQNVVISGTSSNNNSYSTGSGALTRPMQRKLVTLIHTQLAEDEGRSRALRAARSIGERAVKELILMHQNPQTLSTALWAAVRQRGCQFLGPAMQEAVLHLIVLSLEDGISLSRKVLVLFVVQRLEKQFTQASKTSIGHVVQLLYRASCFKVTKREGDSSLLQLQEKYRTYSALRKEHDAQIVQIAMEAGLHISPEQWSALLYGDDEHKSHMQSIIDKLQTPASFASSIQELVIALQRTNDPHNLQSLRQHLDKLSAIDPSPDAVLDSWEQLEECMESLSVAVTGLQSYSKEYASRNKGNLEGAQMINTKYRTSMCRDILQKNNCPRGSNCNFAHTEEELEKYRKR 455
            MP+QA QWT+F  CP+C NE+++    PISLGC H++C++CL +L ++ CPFDQ  I   I  LP+N+ALL LVG ++ D   SI +  + +NK  Y  AKK +E LA  L+ +     S      S    AL+RPMQRKLVTL++ QL E+EGR RA+RAARS+GER V ELIL HQNPQ LS  LWAAVR RGCQFLGPAMQE  L L++L+LEDG +LSRKVLVLFVVQRLE +F QASKTSIGHVVQLLYRASCFKVTKR+ DSSL+QL+E++R+Y ALR+EHDAQIV IAMEAGL ISPEQWS+LLYGD  HKSHMQSIIDKLQ+P SFA S+QEL I LQRT DP NL  LR HL+ L+ IDP+PDAV  +WEQLE  M ++   V GL  + + Y+   KG+       N+KY+TSMCRD+ Q+  CPRG+NC FAH++EELEKYR R
Sbjct:    1 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFALLQLVGAQVPDH-QSIKLSNLGENK-HYEVAKKCVEDLALYLKPL-----SGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYS--RKGHETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLR 446
The following BLAST results are available for this feature:
BLAST of TCONS_00067354-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RC3H20.000e+061.54Roquin-2 OS=Homo sapiens GN=RC3H2 PE=1 SV=2[more]
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