TCONS_00067354-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067354-protein
Unique Name	TCONS_00067354-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	939

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067354-protein ID=TCONS_00067354-protein|Name=TCONS_00067354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp
MPIQAPQWTDFRLCPVCQNEYNQTQKPPISLGCGHSICQSCLFQLSKQQC
PFDQAEIQIAIKKLPINYALLSLVGGKINDCVDSIDIEEVQQNKKEYSAA
KKAIEILAQSLQNVVISGTSSNNNSYSTGSGALTRPMQRKLVTLIHTQLA
EDEGRSRALRAARSIGERAVKELILMHQNPQTLSTALWAAVRQRGCQFLG
PAMQEAVLHLIVLSLEDGISLSRKVLVLFVVQRLEKQFTQASKTSIGHVV
QLLYRASCFKVTKREGDSSLLQLQEKYRTYSALRKEHDAQIVQIAMEAGL
HISPEQWSALLYGDDEHKSHMQSIIDKLQTPASFASSIQELVIALQRTND
PHNLQSLRQHLDKLSAIDPSPDAVLDSWEQLEECMESLSVAVTGLQSYSK
EYASRNKGNLEGAQMINTKYRTSMCRDILQKNNCPRGSNCNFAHTEEELE
KYRKRRNLSYNRPPPQMGHMPNGGPPPMMNGMAPNGMPPYPNSRASSSPD
SCINADLDDEIVEMTKITQVRTESFPPPQQHNPTMHRIPMGYMDQEGSPQ
QQQMDINNQMKNLSMNGHPPPNGPYTQPYANNQPNFSQPQVSPPQQPKKN
EQVMKLPPGYAASMPPQMPPQNIQPNAPPPRQPPSMYSPPIQQQAHYQPS
YYDMREPPMPQQPPPHAQVYLQSNQHPYVTNAQVYQPPPQQAPEFNGGYM
QYQQPNMDYPTFNSHFPHPMPIQRTAVGARGASNEDFKDLIKPTKSEFGN
LSISVKDDSDWKTGGGSSSTKSSAFDYIDSGRGSSSGYHSSSDAFSPISN
SSLGSRSSPPNMKPDSDCSKMFDNIWSLEPKSSGNGWTTGKTNGWDNLLD
TGNRMSDADDRNTSNESLGRSSEHQSTTLDDERSYTSFMNLSRSSSDLLN
NNTSSTANQNGSTSSANHDFMGLLSPTLTRRPPPGFGLI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042088	XLOC_042088	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067354	TCONS_00067354	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	GENE3D	4.10.1000.10		coord: 415..453 e-value: 3.9E-11 score: 42.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 832..884
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 896..939
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 755..819
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 522..645
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 9..58
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 419..446 e-value: 6.4E-4 score: 29.0
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 419..447 score: 15.554
IPR000571	Zinc finger, CCCH-type	SUPERFAMILY	90229	CCCH zinc finger	coord: 417..450
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 14..53 e-value: 2.7E-6 score: 36.9
IPR001841	Zinc finger, RING-type	PFAM	PF14634	zf-RING_5	coord: 14..52 e-value: 8.9E-7 score: 28.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 14..54 score: 11.486
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 14..52 e-value: 1.1132E-5 score: 42.818
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 3..164 e-value: 5.3E-10 score: 38.8
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 33..42

Blast

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BLAST of TCONS_00067354-protein vs. Swiss-Prot (Human)
Match: RC3H2 (Roquin-2 OS=Homo sapiens GN=RC3H2 PE=1 SV=2)

HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 280/455 (61.54%), Postives = 341/455 (74.95%), Query Frame = 0

Query:    1 MPIQAPQWTDFRLCPVCQNEYNQTQKPPISLGCGHSICQSCLFQLSKQQCPFDQAEIQIAIKKLPINYALLSLVGGKINDCVDSIDIEEVQQNKKEYSAAKKAIEILAQSLQNVVISGTSSNNNSYSTGSGALTRPMQRKLVTLIHTQLAEDEGRSRALRAARSIGERAVKELILMHQNPQTLSTALWAAVRQRGCQFLGPAMQEAVLHLIVLSLEDGISLSRKVLVLFVVQRLEKQFTQASKTSIGHVVQLLYRASCFKVTKREGDSSLLQLQEKYRTYSALRKEHDAQIVQIAMEAGLHISPEQWSALLYGDDEHKSHMQSIIDKLQTPASFASSIQELVIALQRTNDPHNLQSLRQHLDKLSAIDPSPDAVLDSWEQLEECMESLSVAVTGLQSYSKEYASRNKGNLEGAQMINTKYRTSMCRDILQKNNCPRGSNCNFAHTEEELEKYRKR 455
            MP+QA QWT+F  CP+C NE+++    PISLGC H++C++CL +L ++ CPFDQ  I   I  LP+N+ALL LVG ++ D   SI +  + +NK  Y  AKK +E LA  L+ +     S      S    AL+RPMQRKLVTL++ QL E+EGR RA+RAARS+GER V ELIL HQNPQ LS  LWAAVR RGCQFLGPAMQE  L L++L+LEDG +LSRKVLVLFVVQRLE +F QASKTSIGHVVQLLYRASCFKVTKR+ DSSL+QL+E++R+Y ALR+EHDAQIV IAMEAGL ISPEQWS+LLYGD  HKSHMQSIIDKLQ+P SFA S+QEL I LQRT DP NL  LR HL+ L+ IDP+PDAV  +WEQLE  M ++   V GL  + + Y+   KG+       N+KY+TSMCRD+ Q+  CPRG+NC FAH++EELEKYR R
Sbjct:    1 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFALLQLVGAQVPDH-QSIKLSNLGENK-HYEVAKKCVEDLALYLKPL-----SGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYS--RKGHETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLR 446

The following BLAST results are available for this feature:

BLAST of TCONS_00067354-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067354-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
RC3H2	0.000e+0	61.54	Roquin-2 OS=Homo sapiens GN=RC3H2 PE=1 SV=2	[more]

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TCONS_00067354-protein (polypeptide) - C. hemisphaerica

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