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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067350 ID=TCONS_00067350|Name=TCONS_00067350|organism=Clytia hemisphaerica|type=transcript|length=6532bpRun BLAST on NCBI protein sequence of TCONS_00067350-protein >TCONS_00067350-protein ID=TCONS_00067350-protein|Name=TCONS_00067350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1629bp MRLLILLSFVLNYVWTQDFANNDEYQFGRAIKCKRDDGIGQRCMPVFENVRun BLAST on NCBI transcript from alignment at scaffold_469:418309..441917+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067350 ID=TCONS_00067350|Name=TCONS_00067350|organism=Clytia hemisphaerica|type=transcript|length=23609bp|location=Sequence derived from alignment at scaffold_469:418309..441917+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_469:418309..441917+ >TCONS_00067350 ID=TCONS_00067350|Name=TCONS_00067350|organism=Clytia hemisphaerica|type=CDS|length=78240bp|location=Sequence derived from alignment at scaffold_469:418309..441917+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067350 vs. Swiss-Prot (Human)
Match: LAMC1 (Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3) HSP 1 Score: 1098.19 bits (2839), Expect = 0.000e+0 Identity = 624/1605 (38.88%), Postives = 921/1605 (57.38%), Query Frame = 2
Query: 386 KCKRDDGIGQRCMPVFENVAYNRIVVANNTCGTYGKPEEYCVQTGVSGATKICETCYEKVPGQNHPADLMTDIKIDGNPTWWQSQTLLDN-RY--GVHLILDFKKKYNIAFIRIRFHTIRPHSFAIHKKSTYSPSERWLPYQFYSRTCNDTYGLPNKGIV-TLANQNIALCTDRYSGMIPLSGGNVAYLTLDHRPGKNNFDRYPSLQEWVTVTQLKISLDQLNTFGDEVFGDPKVLKSYYFAISDIAVGGRCKCNGHASTCARNQNTARYYCECDHNTAGVDCEKCLPLYNDRPWRRASGRFANPCKKCDCNGLADTCVFDEQLWIDSNYRSGGRCVNCQKNTDGVNCERCKQYHYRKTSSESCTPCNCNQDGSRSASCNNDGRCSCKPGVTGDKCDRCISGYYGFSSTGCQQCYCDKEGSLSNTCDATGQCKCKENVMGKRCDQCKPNHFDLDTTNPKGCKACFCNGHGVSCTHAQGIQSKLISSTFDTDLNGWRLEDQYGNDYTNLLRRQQGTQHITSEAVGSKTLYMVAPSRYLGDKLSSYAKNFAFTYGIYREPEDPEIVTSREDIIFEGAGMTATYEITSQNNERPKGRFVKFNYKLVEPS------GMTTFNFQKLLSDLTAIKIRTTFLKNRRFAIDDVNMESTQYVSLNSLDQVTWKEKCQCQVGYAGEQCEKCQPGFTRENVGSGPLGRCVPCECNNHGTRCDPETGICECQDNTSGRNCELCKKGYYGNPTRGTKGDCQPCPCIFANECILIGQS--VKCTDCPEGHIGDNCEKCADGYFGDPEGKLGTPTKCQRCDCNGNVDPNAIGNCDGLTGACLKCIYNTTNGDEEKCEECADGFYGDALA-EPKGNCTACKCFEPGTKKPAGHVAGEAISCDK-NGKCECLDNVKGDHCDQCPAGHWNVQSGNGCEKCNCHPDGSIGEDCDIETGQCKCRPGVAGRTCNQCAPGHFEFSADGCKACNCHPDGSVHQNCTSDGVCVCKPGVLGIKCDQCPENN-YNLS-VGCIACPKCFDLVQLAVNKLRQRLSTMNLTKGNF-TNEEVGIDVRDENFENAIRALDKAIDELKKKTNSLLDGDKQLFEFFDGLRKQFEKINERFGELKSMVEQSKEASEKGEVEVTRAXXXXXXXKKLLQDAEDKIAQESAKLFDKNDDSAVDLSDLAKEMREIAKEARKLATKHEKEAGEIQSTTDMALNQSTNAYNTAKMARDMEEKINKELKENVVDVDEAMKLAEESRKLINDSVAESNAAIADGKKLIDEAMEELPDFKAKEMKESADEKTKSASDVSEKSDQLLKENKEAIEQLKKDDEEARRLMKEGRELKADSNDLYAKAKNASDEAMQAQEDGKRVANEAKEMLKTLMEFEETIAKSKANATEAMXXXXXXXXXXXEANEVANVADKKVSGAEGDAEESHNTASNAHNVTMAAKNDIDDLIAQAKKLLNETMSFMMNEVVETQNNIKETDKKLDEYKEIAIEDGKKVDKASDDSKMAAEVASKANNDLTKSLEDVDNLIETXXXXXXXXXXXXXXXXXXXXXXXXXIDGA-ISFEINSLQNKLKSQNATITEYELDLDPLRAQVEFVHQLYQYLPKTCFRSP 5146
+C + G QRCMP F N A+N VVA NTCGT PEEYCVQTGV+G TK C C P H A +TD + TWWQSQT+L +Y ++L L K ++I ++R++FHT RP SFAI+K++ W+PYQ+YS +C +TY N+G + T ++ ALCTD +S + PL+GGNVA+ TL+ RP NFD P LQEWVT T ++++L++LNTFGDEVF DPKVLKSYY+AISD AVGGRCKCNGHAS C +N+ + C C HNT GVDCEKCLP +NDRPWRRA+ A+ C CDCNG + C FD +L+ + + GG C NCQ NTDG +CERC++ +R ++E+C+ C+C+ GS S C++ GRCSCKPGV GDKCDRC G++ + GC+ C CD GS+ TG+C CK+NV G C++CKP F+L+++NP+GC CFC GH CT+A G ISSTF D +GWR E + G++ + ++ + S++ + Y +AP+++LG ++ SY +N +F++ + R + S ED++ EGAG+ + + +Q N P VK+ ++L E + +T F FQKLL++LT+IKIR T+ + +DDV + S + TW E C C VGY G+ CE C G+ RE GP CV C CN H CDPETG+C C+DNT+G +CE C GYYG+ T GT DCQPCPC + C ++ ++ V CT+CP G G CE C DGYFGDP G+ G C+ C C+ N+DPNA+GNC+ LTG CLKCIYNT C+ C DGF+G+ LA P C AC C GT K + SC+ G+CECL +V G C C G +N+QSG GCE+C+CH GS CDI TGQC+C+PG+ G+ C +C HF F +GCK C+CHP+GS+ C DG C C+ G +G +CDQC EN YN S GC CP C+ LV+ V R +L + N T +E+ V D+ FE+ ++ ++ + +L ++ + D D+ L + + R +++ +E++ +E+ V E +IE + L+ A+ A S + D M +A+EARKLA +H++EA +I A + ST AYN E + E++E ++A ++++ K V E D I ++ +L ++ ++ A+ A ++ + DQ LK+ ++ E ++ + E + L+++G+ + ++ L A+A A A +A + G+ EA ++L L +F+ + +K A EA++ IP I + I EANE A + + A DA E+ N A A + A + + A+A++ E ++ + NEV ++E +K+L ++ A +D AS ++ A A KA N +T L +++L+E + LD ++L +L E E A+D++ + + +++ L+N+ K Q A I +Y D++ + + + + + LP CF +P
Sbjct: 39 ECTDEGGRPQRCMPEFVNAAFNVTVVATNTCGT--PPEEYCVQTGVTGVTKSCHLCDAGQPHLQHGAAFLTDYNNQADTTWWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGP--WIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECMKNE-FDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH--GGHCTNCQDNTDGAHCERCRENFFRLGNNEACSSCHCSPVGSLSTQCDSYGRCSCKPGVMGDKCDRCQPGFHSLTEAGCRPCSCDPSGSIDECNIETGRCVCKDNVEGFNCERCKPGFFNLESSNPRGCTPCFCFGHSSVCTNAVGYSVYSISSTFQIDEDGWRAEQRDGSEASLEWSSERQDIAVISDSYFPR--YFIAPAKFLGKQVLSYGQNLSFSFRVDRR----DTRLSAEDLVLEGAGLRVSVPLIAQGNSYPSETTVKYVFRLHEATDYPWRPALTPFEFQKLLNNLTSIKIRGTYSERSAGYLDDVTLASAR---PGPGVPATWVESCTCPVGYGGQFCEMCLSGYRRETPNLGPYSPCVLCACNGHSETCDPETGVCNCRDNTAGPHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTKEVVCTNCPTGTTGKRCELCDDGYFGDPLGRNGPVRLCRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTAGF---YCDRCKDGFFGNPLAPNPADKCKACNCNLYGTMK-------QQSSCNPVTGQCECLPHVTGQDCGACDPGFYNLQSGQGCERCDCHALGSTNGQCDIRTGQCECQPGITGQHCERCEVNHFGFGPEGCKPCDCHPEGSLSLQCKDDGRCECREGFVGNRCDQCEENYFYNRSWPGCQECPACYRLVKDKVADHRVKLQELESLIANLGTGDEM---VTDQAFEDRLKEAEREVMDLLREAQDVKDVDQNLMDRLQRVNNTLSSQISRLQNIRNTIEETGNLAEQARAHVENTERLIEIASRELEKAKVAAANVSVTQPESTGD--------PNNMTLLAEEARKLAERHKQEADDIVRVAKTANDTSTEAYNLLLRTLAGENQTAFEIEELNRKYEQAKNISQDLEKQAA-RVHEEAKRAGDKAVEIYASVAQLSPLDSETLENEANNIKMEAENLEQLIDQKLKDYEDLREDMRGKELEVKNLLEKGKTEQQTADQLLARADAAKALAEEAAKKGRDTLQEANDILNNLKDFDRRVNDNKTAAEEALRKIPAINQTITEANEKTREAQQALGSAAADATEAKNKAHEAERIASAVQKNATSTKAEAERTFAE-VTDLDNEVNNMLKQLQEAEKELKRKQDDADQDMMMAGMASQAAQEAEINARKAKNSVTSLLSIINDLLEQLGQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIEEIMKDIRNLEDIRKTLPSGCFNTP 1604 The following BLAST results are available for this feature:
BLAST of TCONS_00067350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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