TCONS_00067348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067348
Unique NameTCONS_00067348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067348 ID=TCONS_00067348|Name=TCONS_00067348|organism=Clytia hemisphaerica|type=transcript|length=1988bp
NAATGAAGAACCGCACGAAGGAACGAATGCAGATGACTCAGTTCTCATCG
TCAATGAGGTGCGAGGAACAACGGATCTTTCGAGACCAACACTTGAAGAC
GACGAACCAACCTTCCCTCCAAACCTCTCTTCTAGACCAGACCCAATGcA
ACCTCCGCACGGACCTCACTCGTCGCTCGATTTGATCGAAGACCGACTCC
GCATCCTTCGTGAAAGACGCCAAATGCATGAAGCCATGACACGAGTTAAC
CCAATCGACTCGGTACGCGAACGTGAGGAAATCGCTCAACCGTCCTCAGG
CGTTCATGAACGAATGGGATTACGTAATCGTAACCGGCCAACCAATAACA
ATCGAGAATCGAATGAAGGAACAGCTAATGAGAGTCGAGCAAATGAAGAG
GAACAGCGACCGAGGGAAAACCTCCGCCAAAGCGAACGAAACATGACCGC
GCGAATGACCGCTTCGGATAATCTAAACCAAGagGCTGCAGACAATGGTG
GTGAAGTGGAGTTTATCGGAGAGTGGAATGTACGGAACAGCCCTGCATCA
CGACAACGTCACATTCCGCCATCCCTCCTTCCCTTTCAACTTGGTCACCC
GTTACATTTACCGTTCGCGTCGTCCGAACATCGTCATCATTTCTTGAGAT
TTCTTCCGACTGTCACACCTCCACGTCTCCATCATTTGTAccaagaaaat
tatgaagctctTCTCAACCTTGCCGACACTCTCGGTCCAGGGAAACCACG
TGGTCTTGACAAAACAGAGATCGAGCGGATTCCGTCCTTCCGCTTTTCAT
CGAACACGGCCAAAGAGACGAACGTCAAATGTGTCGTCTGCATCAGCGAG
TACACTAATCGTGAGAAGTTGAGACGTCTTCCATGTTCGCACGACTTCCA
TGCTAAATGTATCGATAAATGGCTCAAGTCCAACAAAACATGTCCAGTGT
GTCGTGATGAAGTGAAAGTTACGTCCGCCGAATGATGTTTGTATATACAT
TGGGTTGTCAAGACAACAAGTGGTCGAGACTGGTGACGAAGAAAGGAGAA
TAAAGACGGCAGCTCCTCGCTGTAGAATATGAAAGAATGATGCATGACCA
TGAGGGTCAATGGATGTCTTCCTACACAAGGTGTTTATAGATATCAACAT
CCACCTTACCTTCTGAGATGTTGTTTGGATGCATGTCATTCAAAATAAAG
CCATGATGCCACCATATGCAACAATTGATCACATTCTCCAGCTATGGGTT
GATGAGAAAAACCCATTAAAATTTTGGGTTCAAATTGAATGGAATGGAAA
GATATTCTAAAGTGGTCTCTTGTTCAGTTTTCTCCCGCGCATGTGCAGAA
GCAATGATTGATGCGTATAAACAATAAAGAAGTGTTTCATTATTTGATAA
CAACCGTAAATTAAGTACGCCTCATTAACCATGTCTTTTCTATCATACTT
CTCTTGACCAAGCTGGATGTGGTTCGCGTTTTTACTGTTTAAGGCTCTGT
GCCAGAAAGGTCCATCTGGATGATTCAGAGCTGAAACTTGCATTTAACTG
GACCTATAGATGCTATTGTTAAGGGTTTTATCAAAGGGATGTCATATTCT
TGCCCTTCAGCTTTTGTGTTCGATATTTGTCAACTTTTTAAGCCAATCTT
TGTATGATGTAtagaatttactttttttttcactttttgtctTATTATTA
GCTCTACTCCACATGAAATAATAGTTTTCAAGCAGGCTTTTTGTTTCGTC
TGGTATACAAATGTACTTTatttcttgttttattttctggtGATTTTTAG
TGGTGATCTTAGAGACAATATTATTGCCTAATAAATTTGTTTATGTAATT
ATTACTAccattttttaaagtatattttcaTTGGTTCTACTAAAGAAATC
ACACTGCATACATTTATTTTCAagcaaaagtttattttttttaatcttta
tttTAACTTGTTTGGCTATTTTTTCCAATTTATGCTTC
Run BLAST on NCBI

transcript from alignment at scaffold_469:411296..415667+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067348 ID=TCONS_00067348|Name=TCONS_00067348|organism=Clytia hemisphaerica|type=transcript|length=4372bp|location=Sequence derived from alignment at scaffold_469:411296..415667+ (Clytia hemisphaerica)
NAATGAAGAACCGCACGAAGGAACGAATGCAGATGACTCAGTTCTCATCG TCAATGAGGTATATCTTTCAtactatgtttttttttacttttgacaATAT CTATCTACCCTAACGCCACCGGGTTTTCTGGTTTGTTACCTGATTTATTG AGCCACACATGCACTTGTTGTTAAATTCCCTATAATTCTTACAATATTCC ATTTCCGGCTCCATAATAACACACACAATAATATTTGAACGAATTAAAGT TGTTTATAACGACTTCTTTCTGTGATGATTCGTGAAAGTTTTCTATATCA TACGTTTTACTTAGGTGCGAGGAACAACGGATCTTTCGAGACCAACACTT GAAGACGACGAACCAACCTTCCCTCCAAACCTCTCTTCTAGACCAGACCC AATGGTAAGACTTCCTATACTGATAATTCCCAGTAGGAATGGAAACCGTC GGAAAATACAGCCACTTTGTCACCTACAGATGGGGGTCTTTAACTTCTTG TTATTTCAGGGTCAAATTTGATTGTAGGAATGCAACAAAATTTTTACGAA CCTTTTAGAATCGGGAATCGGTACCTATGTGGagtttttgatggattttt gtaTCTCCTTAGAAACGGTTACTAAGAAACTTAACTGACTCTGCCAAAAC AAAATGACCTATACGACCCGTACATTTAGGCGGagtaaattgaaaataaa actattGTTAATCGTAACAtctattattttcatcaaagcAACCTCCGCAC GGACCTCACTCGTCGCTCGATTTGATCGAAGACCGACTCCGCATCCTTCG TGAAAGACGCCAAATGCATGAAGCCATGACACGAGTTAACCCAATCGACT CGGTACGCGAACGTGAGGAAATCGCTCAACCGTCCTCAGGCGTTCATGAA CGAATGGGATTACGTAATCGTAACCGGCCAACCAATAACAATCGAGAATC GAATGAAGGAACAGCTAATGAGAGTCGAGCAAATGAAGAGGAACAGCGAC CGAGGGAAAACCTCCGCCAAAGCGAACGAAACATGACCGCGCGAATGACC GCTTCGGATAATCTAAACCAAGaggtaatgttttttttagtttgagcATG CTGCTATTTGAGGGACTACtccgaaaaaaatgaagatgtgTGCCAGTAGA GACTTTATTTTGAGGCTTTCTCAAAATCCCAACATTTACGACCAATTTTG AAGGTTGTGCTGGTCAAAGTGAAAATGAGTGTACAGTAAAGAAGCTTTCC TCCATTCAAATGAAAAGTTCTGTTTTTTGCAGGCTGCAGACAATGGTGGT GAAGTGGAGTTTATCGGAGAGTGGAATGTACGGAACAGCCCTGCATCACG ACAACGTCACATTCCGCCATCCCTCCTTCCCTTTCAACTTGGTGTAAGTT CAACCTTCAAACAGTAACACACTCCTGTGCGGTGTGTGCCGAGCCTTAAC TTTGCGCCTTTTTAACAGAAATACTGTCGTGTGTGGTGTGTGTCAAGCCT TAATTCTGTGCCCTTTTCTAACAAAAGTACTCTCGTGTGTGTTGTGTGCC GAGCCTTAACATTGTGCTCTGATTAACAGAAACACGCTCTGTTGTGAAAA TGCTTAAACATTTTGTTGCTAGCAAATCTGTCACTTCATTTTTCGAGTCT TTTCTTTCAAACAATGTTTGTTTGTATGTTTGGTTCTTTAGTGTCATCAT TGATAAACAATTTACAAATGTAGATGTCTCTTTTCTTTCGTTCCAGCACC CGTTACATTTACCGTTCGCGTCGTCCGAACATCGTCATCATTTCTTGTAA GTATCTACTCTGCTTCGTGTACTGCCACTGGCCTGCTTGGTCAAACAGAC CTGGTGGATAGTGGTAATAAGTCCTTTTATTGTCGGTACTTTAAATCGTT TTTAGCAAGCCAGTTGCATTTTTAGTGCATCTTCTTGTGGCAAAATTATC CCTCCGCTTGATGAtaataaaatattgattgaCTTTTCAGGAGATTTCTT CCGACTGTCACACCTCCACGTCTCCATCATTTGTAccaagaaaattatga agctctTCTCAACCTTGCCGACACTCTCGGTCCAGGGAAACCACGTGGTC TTGACAAAACAGGTAATTCGTTGTCGGTGGTTGTGTTTGGGTTGATACAA TTGACTCTAGTTTATTTAAACTCAaaccaaaaaattgatttttttctatt gaAGTACAGAAAGATTTCAACTGTTCACGAGGTTTTTATCCTTGACGATA TGACTGAAAATTAGTTTGCATTGTACTGATCTTTTGAGGCTCCTCTAAAA ACCTGAGGAGTTAATTGACTACTTTCCGACTACTTTCTGCAAGATCTGAG GGAAAAACTCCTCTTTTATCCAGCATATTGCTTTTGATCCAAAAGATTTA TTATCAGATCGCATGTTTTTACACGGATAAGCTTCGAGAATATGGGAGAA ATAGTCAAGAAGTCAAGCATAGTGTCAAATATCTCTTTCCTTAATATTTT GatattctctctctctcttcgtgTCGTTTTGTGATGAAGATTAGATATTT AAACCTTCTCCTCATCTTATCAAGGTTACgacaaattattgaaaaagaaa gaggaaagaaaaaaatgatgatgatgatgaaaaggaaagaaaaatatatt taaccTCTGTTTGCATTTAAAAAGCAAAGATGTTGTTTAAAGTATAGACA GCGAAAAAGGATATGATAAATATAACATCACATCTTTCGTATATGGTTCA gcacaaaaattttcaattcaaaaaaatttcaacttcgTCTGCCAAACTCA CTTTAAATATAAAACATGGACTCTCAAGCTACTACAACCAGTTTCACGGA TAAAATCGCAGCTTTGTCTACCATATTGATTTGTTGTCTTTCAGAGATCG AGCGGATTCCGTCCTTCCGCTTTTCATCGAACACGGCCAAAGAGACGAAC GTCAAATGTGTCGTCTGCATCAGCGAGTACACTAATCGTGAGAAGTTGAG ACGTCTTCCATGTTCGCACGACTTCCATGCTAAATGTATCGATAAATGGC TCAAGGTGGGTACAATCAacgaatttaatttttttcaaaatatttgagat cTTGACTGACGTATATTCTTACAACGTATCATACTTTTCGCTTCACTGGT TTTGGGCCGGGCTATTAATAAAATAAGGTTTACGGCCATAACGATTACTT TCGCGATTCAAATAGTTGTTAGTCGTTAGTTACTGATATTTTCAAAGCCA ACGAGCGGTTTAGATTTTTCCTCATGTCATATTTATGACTCAAAATTGTT CTTCTCTTGCAGTCCAACAAAACATGTCCAGTGTGTCGTGATGAAGTGAA AGTTACGTCCGCCGAATGATGTTTGTATATACATTGGGTTGTCAAGACAA CAAGTGGTCGAGACTGGTGACGAAGAAAGGAGAATAAAGACGGCAGCTCC TCGCTGTAGAATATGAAAGAATGATGCATGACCATGAGGGTCAATGGATG TCTTCCTACACAAGGTGTTTATAGATATCAACATCCACCTTACCTTCTGA GATGTTGTTTGGATGCATGTCATTCAAAATAAAGCCATGATGCCACCATA TGCAACAATTGATCACATTCTCCAGCTATGGGTTGATGAGAAAAACCCAT TAAAATTTTGGGTTCAAATTGAATGGAATGGAAAGATATTCTAAAGTGGT CTCTTGTTCAGTTTTCTCCCGCGCATGTGCAGAAGCAATGATTGATGCGT ATAAACAATAAAGAAGTGTTTCATTATTTGATAACAACCGTAAATTAAGT ACGCCTCATTAACCATGTCTTTTCTATCATACTTCTCTTGACCAAGCTGG ATGTGGTTCGCGTTTTTACTGTTTAAGGCTCTGTGCCAGAAAGGTCCATC TGGATGATTCAGAGCTGAAACTTGCATTTAACTGGACCTATAGATGCTAT TGTTAAGGGTTTTATCAAAGGGATGTCATATTCTTGCCCTTCAGCTTTTG TGTTCGATATTTGTCAACTTTTTAAGCCAATCTTTGTATGATGTAtagaa tttactttttttttcactttttgtctTATTATTAGCTCTACTCCACATGA AATAATAGTTTTCAAGCAGGCTTTTTGTTTCGTCTGGTATACAAATGTAC TTTatttcttgttttattttctggtGATTTTTAGTGGTGATCTTAGAGAC AATATTATTGCCTAATAAATTTGTTTATGTAATTATTACTAccatttttt aaagtatattttcaTTGGTTCTACTAAAGAAATCACACTGCATACATTTA TTTTCAagcaaaagtttattttttttaatctttatttTAACTTGTTTGGC TATTTTTTCCAATTTATGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042084XLOC_042084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067348-exon-scaffold_469-1491911889:411296..411353TCONS_00067348-exon-scaffold_469-1491911889:411296..411353Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:411296..411353TCONS_00067348-exon-scaffold_469-1510915933:411296..411353Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:411296..411353TCONS_00067348-exon-scaffold_469-1575043694:411296..411353Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1491911889:411610..411699TCONS_00067348-exon-scaffold_469-1491911889:411610..411699Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:411610..411699TCONS_00067348-exon-scaffold_469-1510915933:411610..411699Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:411610..411699TCONS_00067348-exon-scaffold_469-1575043694:411610..411699Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1491911889:412034..412369TCONS_00067348-exon-scaffold_469-1491911889:412034..412369Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:412034..412369TCONS_00067348-exon-scaffold_469-1510915933:412034..412369Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:412034..412369TCONS_00067348-exon-scaffold_469-1575043694:412034..412369Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1491911889:412578..412688TCONS_00067348-exon-scaffold_469-1491911889:412578..412688Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:412578..412688TCONS_00067348-exon-scaffold_469-1510915933:412578..412688Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:412578..412688TCONS_00067348-exon-scaffold_469-1575043694:412578..412688Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1491911889:413042..413091TCONS_00067348-exon-scaffold_469-1491911889:413042..413091Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:413042..413091TCONS_00067348-exon-scaffold_469-1510915933:413042..413091Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:413042..413091TCONS_00067348-exon-scaffold_469-1575043694:413042..413091Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1491911889:413286..413407TCONS_00067348-exon-scaffold_469-1491911889:413286..413407Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:413286..413407TCONS_00067348-exon-scaffold_469-1510915933:413286..413407Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:413286..413407TCONS_00067348-exon-scaffold_469-1575043694:413286..413407Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1491911889:414190..414350TCONS_00067348-exon-scaffold_469-1491911889:414190..414350Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:414190..414350TCONS_00067348-exon-scaffold_469-1510915933:414190..414350Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:414190..414350TCONS_00067348-exon-scaffold_469-1575043694:414190..414350Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1491911889:414608..415667TCONS_00067348-exon-scaffold_469-1491911889:414608..415667Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1510915933:414608..415667TCONS_00067348-exon-scaffold_469-1510915933:414608..415667Clytia hemisphaericaexon
TCONS_00067348-exon-scaffold_469-1575043694:414608..415667TCONS_00067348-exon-scaffold_469-1575043694:414608..415667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:411296..415667 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.05123e-06 0 0 2.24579e-09 0.0961664 0 0 0 0 0 0 0 0 0 0 0 0 0 0.977012 0 0 1.04732e-09 0 0.00958682 0.0323913 0
Blast
BLAST of TCONS_00067348 vs. Swiss-Prot (Human)
Match: RNF38 (E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 127.872 bits (320), Expect = 3.586e-31
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 2
Query:  695 ENYEALLNLADTLGPGKPRGLDKTEIERIPSFRFSSNTAKETNVKCVVCISEYTNREKLRRLPCSHDFHAKCIDKWLKSNKTCPVCRDEV 964
            ENYEALLNLA+ LG  KPRGL K +IE++PS+RF+ N  +     CVVC+ ++ +R+ LR LPC+H+FHAKC+DKWLK+N+TCP+CR + 
Sbjct:  418 ENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 507          
The following BLAST results are available for this feature:
BLAST of TCONS_00067348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF383.586e-3157.78E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens ... [more]
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