TCONS_00067348 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067348
Unique Name	TCONS_00067348
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1988

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_469:411296..415667+

transcript sequence

>TCONS_00067348 ID=TCONS_00067348|Name=TCONS_00067348|organism=Clytia hemisphaerica|type=transcript|length=1988bp
NAATGAAGAACCGCACGAAGGAACGAATGCAGATGACTCAGTTCTCATCG
TCAATGAGGTGCGAGGAACAACGGATCTTTCGAGACCAACACTTGAAGAC
GACGAACCAACCTTCCCTCCAAACCTCTCTTCTAGACCAGACCCAATGcA
ACCTCCGCACGGACCTCACTCGTCGCTCGATTTGATCGAAGACCGACTCC
GCATCCTTCGTGAAAGACGCCAAATGCATGAAGCCATGACACGAGTTAAC
CCAATCGACTCGGTACGCGAACGTGAGGAAATCGCTCAACCGTCCTCAGG
CGTTCATGAACGAATGGGATTACGTAATCGTAACCGGCCAACCAATAACA
ATCGAGAATCGAATGAAGGAACAGCTAATGAGAGTCGAGCAAATGAAGAG
GAACAGCGACCGAGGGAAAACCTCCGCCAAAGCGAACGAAACATGACCGC
GCGAATGACCGCTTCGGATAATCTAAACCAAGagGCTGCAGACAATGGTG
GTGAAGTGGAGTTTATCGGAGAGTGGAATGTACGGAACAGCCCTGCATCA
CGACAACGTCACATTCCGCCATCCCTCCTTCCCTTTCAACTTGGTCACCC
GTTACATTTACCGTTCGCGTCGTCCGAACATCGTCATCATTTCTTGAGAT
TTCTTCCGACTGTCACACCTCCACGTCTCCATCATTTGTAccaagaaaat
tatgaagctctTCTCAACCTTGCCGACACTCTCGGTCCAGGGAAACCACG
TGGTCTTGACAAAACAGAGATCGAGCGGATTCCGTCCTTCCGCTTTTCAT
CGAACACGGCCAAAGAGACGAACGTCAAATGTGTCGTCTGCATCAGCGAG
TACACTAATCGTGAGAAGTTGAGACGTCTTCCATGTTCGCACGACTTCCA
TGCTAAATGTATCGATAAATGGCTCAAGTCCAACAAAACATGTCCAGTGT
GTCGTGATGAAGTGAAAGTTACGTCCGCCGAATGATGTTTGTATATACAT
TGGGTTGTCAAGACAACAAGTGGTCGAGACTGGTGACGAAGAAAGGAGAA
TAAAGACGGCAGCTCCTCGCTGTAGAATATGAAAGAATGATGCATGACCA
TGAGGGTCAATGGATGTCTTCCTACACAAGGTGTTTATAGATATCAACAT
CCACCTTACCTTCTGAGATGTTGTTTGGATGCATGTCATTCAAAATAAAG
CCATGATGCCACCATATGCAACAATTGATCACATTCTCCAGCTATGGGTT
GATGAGAAAAACCCATTAAAATTTTGGGTTCAAATTGAATGGAATGGAAA
GATATTCTAAAGTGGTCTCTTGTTCAGTTTTCTCCCGCGCATGTGCAGAA
GCAATGATTGATGCGTATAAACAATAAAGAAGTGTTTCATTATTTGATAA
CAACCGTAAATTAAGTACGCCTCATTAACCATGTCTTTTCTATCATACTT
CTCTTGACCAAGCTGGATGTGGTTCGCGTTTTTACTGTTTAAGGCTCTGT
GCCAGAAAGGTCCATCTGGATGATTCAGAGCTGAAACTTGCATTTAACTG
GACCTATAGATGCTATTGTTAAGGGTTTTATCAAAGGGATGTCATATTCT
TGCCCTTCAGCTTTTGTGTTCGATATTTGTCAACTTTTTAAGCCAATCTT
TGTATGATGTAtagaatttactttttttttcactttttgtctTATTATTA
GCTCTACTCCACATGAAATAATAGTTTTCAAGCAGGCTTTTTGTTTCGTC
TGGTATACAAATGTACTTTatttcttgttttattttctggtGATTTTTAG
TGGTGATCTTAGAGACAATATTATTGCCTAATAAATTTGTTTATGTAATT
ATTACTAccattttttaaagtatattttcaTTGGTTCTACTAAAGAAATC
ACACTGCATACATTTATTTTCAagcaaaagtttattttttttaatcttta
tttTAACTTGTTTGGCTATTTTTTCCAATTTATGCTTC

Run BLAST on NCBI

transcript from alignment at scaffold_469:411296..415667+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067348 ID=TCONS_00067348|Name=TCONS_00067348|organism=Clytia hemisphaerica|type=transcript|length=4372bp|location=Sequence derived from alignment at scaffold_469:411296..415667+ (Clytia hemisphaerica)
NAATGAAGAACCGCACGAAGGAACGAATGCAGATGACTCAGTTCTCATCG
TCAATGAGGTATATCTTTCAtactatgtttttttttacttttgacaATAT
CTATCTACCCTAACGCCACCGGGTTTTCTGGTTTGTTACCTGATTTATTG
AGCCACACATGCACTTGTTGTTAAATTCCCTATAATTCTTACAATATTCC
ATTTCCGGCTCCATAATAACACACACAATAATATTTGAACGAATTAAAGT
TGTTTATAACGACTTCTTTCTGTGATGATTCGTGAAAGTTTTCTATATCA
TACGTTTTACTTAGGTGCGAGGAACAACGGATCTTTCGAGACCAACACTT
GAAGACGACGAACCAACCTTCCCTCCAAACCTCTCTTCTAGACCAGACCC
AATGGTAAGACTTCCTATACTGATAATTCCCAGTAGGAATGGAAACCGTC
GGAAAATACAGCCACTTTGTCACCTACAGATGGGGGTCTTTAACTTCTTG
TTATTTCAGGGTCAAATTTGATTGTAGGAATGCAACAAAATTTTTACGAA
CCTTTTAGAATCGGGAATCGGTACCTATGTGGagtttttgatggattttt
gtaTCTCCTTAGAAACGGTTACTAAGAAACTTAACTGACTCTGCCAAAAC
AAAATGACCTATACGACCCGTACATTTAGGCGGagtaaattgaaaataaa
actattGTTAATCGTAACAtctattattttcatcaaagcAACCTCCGCAC
GGACCTCACTCGTCGCTCGATTTGATCGAAGACCGACTCCGCATCCTTCG
TGAAAGACGCCAAATGCATGAAGCCATGACACGAGTTAACCCAATCGACT
CGGTACGCGAACGTGAGGAAATCGCTCAACCGTCCTCAGGCGTTCATGAA
CGAATGGGATTACGTAATCGTAACCGGCCAACCAATAACAATCGAGAATC
GAATGAAGGAACAGCTAATGAGAGTCGAGCAAATGAAGAGGAACAGCGAC
CGAGGGAAAACCTCCGCCAAAGCGAACGAAACATGACCGCGCGAATGACC
GCTTCGGATAATCTAAACCAAGaggtaatgttttttttagtttgagcATG
CTGCTATTTGAGGGACTACtccgaaaaaaatgaagatgtgTGCCAGTAGA
GACTTTATTTTGAGGCTTTCTCAAAATCCCAACATTTACGACCAATTTTG
AAGGTTGTGCTGGTCAAAGTGAAAATGAGTGTACAGTAAAGAAGCTTTCC
TCCATTCAAATGAAAAGTTCTGTTTTTTGCAGGCTGCAGACAATGGTGGT
GAAGTGGAGTTTATCGGAGAGTGGAATGTACGGAACAGCCCTGCATCACG
ACAACGTCACATTCCGCCATCCCTCCTTCCCTTTCAACTTGGTGTAAGTT
CAACCTTCAAACAGTAACACACTCCTGTGCGGTGTGTGCCGAGCCTTAAC
TTTGCGCCTTTTTAACAGAAATACTGTCGTGTGTGGTGTGTGTCAAGCCT
TAATTCTGTGCCCTTTTCTAACAAAAGTACTCTCGTGTGTGTTGTGTGCC
GAGCCTTAACATTGTGCTCTGATTAACAGAAACACGCTCTGTTGTGAAAA
TGCTTAAACATTTTGTTGCTAGCAAATCTGTCACTTCATTTTTCGAGTCT
TTTCTTTCAAACAATGTTTGTTTGTATGTTTGGTTCTTTAGTGTCATCAT
TGATAAACAATTTACAAATGTAGATGTCTCTTTTCTTTCGTTCCAGCACC
CGTTACATTTACCGTTCGCGTCGTCCGAACATCGTCATCATTTCTTGTAA
GTATCTACTCTGCTTCGTGTACTGCCACTGGCCTGCTTGGTCAAACAGAC
CTGGTGGATAGTGGTAATAAGTCCTTTTATTGTCGGTACTTTAAATCGTT
TTTAGCAAGCCAGTTGCATTTTTAGTGCATCTTCTTGTGGCAAAATTATC
CCTCCGCTTGATGAtaataaaatattgattgaCTTTTCAGGAGATTTCTT
CCGACTGTCACACCTCCACGTCTCCATCATTTGTAccaagaaaattatga
agctctTCTCAACCTTGCCGACACTCTCGGTCCAGGGAAACCACGTGGTC
TTGACAAAACAGGTAATTCGTTGTCGGTGGTTGTGTTTGGGTTGATACAA
TTGACTCTAGTTTATTTAAACTCAaaccaaaaaattgatttttttctatt
gaAGTACAGAAAGATTTCAACTGTTCACGAGGTTTTTATCCTTGACGATA
TGACTGAAAATTAGTTTGCATTGTACTGATCTTTTGAGGCTCCTCTAAAA
ACCTGAGGAGTTAATTGACTACTTTCCGACTACTTTCTGCAAGATCTGAG
GGAAAAACTCCTCTTTTATCCAGCATATTGCTTTTGATCCAAAAGATTTA
TTATCAGATCGCATGTTTTTACACGGATAAGCTTCGAGAATATGGGAGAA
ATAGTCAAGAAGTCAAGCATAGTGTCAAATATCTCTTTCCTTAATATTTT
GatattctctctctctcttcgtgTCGTTTTGTGATGAAGATTAGATATTT
AAACCTTCTCCTCATCTTATCAAGGTTACgacaaattattgaaaaagaaa
gaggaaagaaaaaaatgatgatgatgatgaaaaggaaagaaaaatatatt
taaccTCTGTTTGCATTTAAAAAGCAAAGATGTTGTTTAAAGTATAGACA
GCGAAAAAGGATATGATAAATATAACATCACATCTTTCGTATATGGTTCA
gcacaaaaattttcaattcaaaaaaatttcaacttcgTCTGCCAAACTCA
CTTTAAATATAAAACATGGACTCTCAAGCTACTACAACCAGTTTCACGGA
TAAAATCGCAGCTTTGTCTACCATATTGATTTGTTGTCTTTCAGAGATCG
AGCGGATTCCGTCCTTCCGCTTTTCATCGAACACGGCCAAAGAGACGAAC
GTCAAATGTGTCGTCTGCATCAGCGAGTACACTAATCGTGAGAAGTTGAG
ACGTCTTCCATGTTCGCACGACTTCCATGCTAAATGTATCGATAAATGGC
TCAAGGTGGGTACAATCAacgaatttaatttttttcaaaatatttgagat
cTTGACTGACGTATATTCTTACAACGTATCATACTTTTCGCTTCACTGGT
TTTGGGCCGGGCTATTAATAAAATAAGGTTTACGGCCATAACGATTACTT
TCGCGATTCAAATAGTTGTTAGTCGTTAGTTACTGATATTTTCAAAGCCA
ACGAGCGGTTTAGATTTTTCCTCATGTCATATTTATGACTCAAAATTGTT
CTTCTCTTGCAGTCCAACAAAACATGTCCAGTGTGTCGTGATGAAGTGAA
AGTTACGTCCGCCGAATGATGTTTGTATATACATTGGGTTGTCAAGACAA
CAAGTGGTCGAGACTGGTGACGAAGAAAGGAGAATAAAGACGGCAGCTCC
TCGCTGTAGAATATGAAAGAATGATGCATGACCATGAGGGTCAATGGATG
TCTTCCTACACAAGGTGTTTATAGATATCAACATCCACCTTACCTTCTGA
GATGTTGTTTGGATGCATGTCATTCAAAATAAAGCCATGATGCCACCATA
TGCAACAATTGATCACATTCTCCAGCTATGGGTTGATGAGAAAAACCCAT
TAAAATTTTGGGTTCAAATTGAATGGAATGGAAAGATATTCTAAAGTGGT
CTCTTGTTCAGTTTTCTCCCGCGCATGTGCAGAAGCAATGATTGATGCGT
ATAAACAATAAAGAAGTGTTTCATTATTTGATAACAACCGTAAATTAAGT
ACGCCTCATTAACCATGTCTTTTCTATCATACTTCTCTTGACCAAGCTGG
ATGTGGTTCGCGTTTTTACTGTTTAAGGCTCTGTGCCAGAAAGGTCCATC
TGGATGATTCAGAGCTGAAACTTGCATTTAACTGGACCTATAGATGCTAT
TGTTAAGGGTTTTATCAAAGGGATGTCATATTCTTGCCCTTCAGCTTTTG
TGTTCGATATTTGTCAACTTTTTAAGCCAATCTTTGTATGATGTAtagaa
tttactttttttttcactttttgtctTATTATTAGCTCTACTCCACATGA
AATAATAGTTTTCAAGCAGGCTTTTTGTTTCGTCTGGTATACAAATGTAC
TTTatttcttgttttattttctggtGATTTTTAGTGGTGATCTTAGAGAC
AATATTATTGCCTAATAAATTTGTTTATGTAATTATTACTAccatttttt
aaagtatattttcaTTGGTTCTACTAAAGAAATCACACTGCATACATTTA
TTTTCAagcaaaagtttattttttttaatctttatttTAACTTGTTTGGC
TATTTTTTCCAATTTATGCTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042084	XLOC_042084	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_469	supercontig	scaffold_469:411296..415667 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.05123e-06	0	0	2.24579e-09	0.0961664	0	0	0	0	0	0	0	0	0	0	0	0	0	0.977012	0	0	1.04732e-09	0	0.00958682	0.0323913	0

Blast

[Close]

BLAST of TCONS_00067348 vs. Swiss-Prot (Human)
Match: RNF38 (E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 127.872 bits (320), Expect = 3.586e-31
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 2

Query:  695 ENYEALLNLADTLGPGKPRGLDKTEIERIPSFRFSSNTAKETNVKCVVCISEYTNREKLRRLPCSHDFHAKCIDKWLKSNKTCPVCRDEV 964
            ENYEALLNLA+ LG  KPRGL K +IE++PS+RF+ N  +     CVVC+ ++ +R+ LR LPC+H+FHAKC+DKWLK+N+TCP+CR + 
Sbjct:  418 ENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 507

The following BLAST results are available for this feature:

BLAST of TCONS_00067348 vs. Swiss-Prot (Human)

BLAST of TCONS_00067348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RNF38	3.586e-31	57.78	E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens ...	[more]

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TCONS_00067348 (transcript) - C. hemisphaerica