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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067339 ID=TCONS_00067339|Name=TCONS_00067339|organism=Clytia hemisphaerica|type=transcript|length=1922bp
GgatgaaaaagtttaaagaaaatgAACTTGGCACTAAAGCTGAAAGGTAC
ACAAATCAAATTTCGCAAAATGGCGCAAACGAACGGTCACGACGCATCCA
ATGGCATTGTCTTCGGTCTCATGAACCAGCAAGGTAAATACCTGACCGCT
GAGAAGTTCGGCAACCAAATTAGTGTCACCGGAACCTCCCTCAGATCCAA
ACAATTATGGACTTTCGAACCAGAAGGTGCTGAATCAAGCAAAGGGTATT
TGAGGAGCCCGCAAAAGAACTACCTGGAGACTACAAAGACAGGGACGGTC
ACTTGTGAGGCTGAGGAGAAGGAAGTCTCTCTATTGTTTGACGTAACGGT
GGCTGATGATGGTCGATGGGCTTTCAAAGATTCGTTTGGGAAATTCCTTG
CAGGAAACACTGAGAGGTTGTACACAACTATGGATTCTAAACAAGCTGAT
GAGTACCTCTGGGCCATCCACATCGCTGGTCACCCACAATGCAACATGAG
AAGTGTCTCACGCAAGCGATTTGTTCATTTGAAGGATGACCAACTGTGCG
CCAATGAAGACATCCCATGGGGTCACGATGCTGTCATCACACTTGAGTTC
CACCGAGGGAAATACGCCATTCGAGATAGCAACGGTCGTTATTTGAACGG
AGAAAGTGGAGAACTGGAAACGACTTCCACAGAAGAATGTATGTTTTCAA
TTGCTTTACAAGATACAGAATTCGCTTTCAAGAGTTCTTCAGGAAAATAT
TTGACGGTGTACGGTCCAGCGGGGAAGTTGATCGCTAACAAGAAAGCAAT
CAGTCGGGATGAACTTTTTGCATTGGAACAGAGCAAAGCACAAGTCATGT
TAACAGCAAATAATGGAAAGACCGCTTCCATCAAGCAAGGAATCGATGTC
ACAGCAAATCAATTCTTGGAGCTTGGTGATTTCGGAGATACGGAGACTTT
CCAAATGGAGTTCATAGATGGGCAGCAAAACCAAGTCACCttcttatcaa
aaaataaaaagtactgGACCGCTGGAAACAAATCcgtgacgtcatcagct
gatCAGATCAGTCCTGAGTGTATCTTTGAATTGGAGTATGAAGGAGATAA
GATCGCATTGAAAGCACATAATGATAGATACATCACATCAACGTCCGGAG
GGAAGTTGGTTCCAACCGGTGAAACGACTTCAGATGCCAACACTTTGTTC
TTGATGCAGTTGATGAATCGACCGATCTTGGTGTTGCGATGCGAGCATGG
TTATGTTGGATTGATCGATAGCAATGATAAAGTTCAATGCAGCAGGGGTG
GTTATGACGCAATGCTGGTGGAAGGGGATGGCCAAGGAAGATATCGATTG
AAGACATCCAAGGGAAAGAGCTGGAAGGTGGATGGCACCTCACATTTGTT
ACAATCCAGTGATGAAggtgatttatttttatttgaactTTGCAGTAAGA
ATAAGATGAGGATCCAAGCCTCTAatggaaaatatttgaaaggtGACCAT
AATGGCGTCATCACTGCAAGTGCTGGTAAAGATGATCGTAACATCTTGTG
GGAATATTGATGAAGATATTTTGACCGACAGAGGATTCATTCTGGTGATA
GACCAAATAGAAAGTAGATCAAAACAAGGAGATATCATTGACCTCTTCCT
CCAGCATTTTTGCTTCTCCATGAAGGACTTTTTGGGTATTGTTAGATATT
TGGTGAAACAACCAATTGACGAACTTtcaattagaattttttttttgttt
acatttatgtttgaaacttttgacattttctttgaactttgaaatttATT
GTATAAATTTAATGGTAGGATAATTTACTGATTTTTAATGTATTAGTTTT
AAAACCCTTTTGTATGAATAGTTCTTGACAAAGAAAATGATAACAACGAA
ATAGAGAAACGATAGTCTTCTg Run BLAST on NCBI protein sequence of TCONS_00067339-protein >TCONS_00067339-protein ID=TCONS_00067339-protein|Name=TCONS_00067339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
MNLALKLKGTQIKFRKMAQTNGHDASNGIVFGLMNQQGKYLTAEKFGNQI
SVTGTSLRSKQLWTFEPEGAESSKGYLRSPQKNYLETTKTGTVTCEAEEK
EVSLLFDVTVADDGRWAFKDSFGKFLAGNTERLYTTMDSKQADEYLWAIH
IAGHPQCNMRSVSRKRFVHLKDDQLCANEDIPWGHDAVITLEFHRGKYAI
RDSNGRYLNGESGELETTSTEECMFSIALQDTEFAFKSSSGKYLTVYGPA
GKLIANKKAISRDELFALEQSKAQVMLTANNGKTASIKQGIDVTANQFLE
LGDFGDTETFQMEFIDGQQNQVTFLSKNKKYWTAGNKSVTSSADQISPEC
IFELEYEGDKIALKAHNDRYITSTSGGKLVPTGETTSDANTLFLMQLMNR
PILVLRCEHGYVGLIDSNDKVQCSRGGYDAMLVEGDGQGRYRLKTSKGKS
WKVDGTSHLLQSSDEGDLFLFELCSKNKMRIQASNGKYLKGDHNGVITAS
AGKDDRNILWEY Run BLAST on NCBI transcript from alignment at scaffold_469:309734..317653+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067339 ID=TCONS_00067339|Name=TCONS_00067339|organism=Clytia hemisphaerica|type=transcript|length=7920bp|location=Sequence derived from alignment at scaffold_469:309734..317653+ (Clytia hemisphaerica)
GgatgaaaaagtttaaagaaaatgAACTTGGCACTAAAGCTGGTAAGTTT
TTGGTCTAATACCCGGTCGGTATCGCATCTTTCGATAGCCTGTAGATACA
agggagtctccataactcgaacaagcacggagaacacaaatttgttcgag
ttaaggaaatttcgagttatggagtaaggtataaggcattgttaacagAA
GGGACGAGTAAACTtgctcgagttatagaggttcaagttaAGGAAACTTT
ACTGTACTAGATTTAGTAGATTTGAGTTTCTGTTTAATGTCGTGCTCGAT
AACTGTGAAGAACGAATTCACAAATTTATTTCTGATTATTACGTCCCGTG
ATGATGGCCACATCAAGGCATGAAAGTTGAAGTAATGTACTTTTTTTAAC
CTGAAATTTTGAACTAAATAGATTTGAGTTTCAAGAAGTTTTCAGCCCAA
AATATCACAATGCTTTTATGACTAATGTCTAATCTTTAAGGTCACGAAAT
TCACTAAAAGAATTTAAGATATTAATTTTGACCTTTGCTGTCGGATGTTA
GTGATTTATAGATATATCACATAGGTGTCATCCTAAACGTCCCAAAAAAG
TAAATTCAAAGAAACGTTAGAATCGAAAAAAGCTTTACAGTTTATCAGGC
ATTGAGCGAAATAAGCAAGATGTGAGTGAGCAGGAGTTGAATAAATACAA
GCTAGTTCTGTACGTACACcgccttctcacagacccggtagtggtggtgg
taaaaataacggaccaaaactcgatatGGATTGACATTCCCATGTTTTGA
AAGGCTGGGGAtatgaattccattgttttcgagccataaaattcagtggg
gattgaaaaaattgaacattattttgcagtgaggatttgcttatctgatt
attttcagcggggacaaaataTAGGGTATAATTTCcgactggggacgata
ttttgggttcccagtgggactgtgagaaggggtgtgtaTGTTGGAAAGAT
ATCCAAAAGAGAAGGATCTCGGAGAGATGGTCTACCGTTCTAGGGTTTGA
TATCTTCAGTATGCTTGTGGTATGAATCTTGAAGGTTTAATATAAAGTAA
TTTCAGTACATAGCATTTTATCGTATTTTTTGTAACATTACGAATAGTTA
GAATGGTTAATAATAATCTAACATAAGGGTACAGCAGTGTAACAGGAAAG
CAGAGAATAAATACAAGAGAAGTACTTCCAAATTTCAAAGCAGATCAAGT
CAGCATCGTTTCACTTACTTTCCAGAGGAGATACTTCCAGTATTTGCTTC
AAATTGACCAAGACTGTCGGTAGGAACGGGTAATGGAATGCTGACCCAGT
TGCGTCCAGTCCCCTCCACATCGCCAAAGAAGATGGTCGAGAAAcctgca
aaaagaaaaattcattatttcttatcattgatttttgtatttttcggTTT
TGAGATCGACCCGTCAGCCCAGTTCATAACAAATTTAGACGAGGGTAAAA
TGCCTCTTGTGACTCTTCacataaagttttttatttttaagaaagaaaat
caagaacAGCTTTATATTATACAAATTTGTGTAACTTTGAAACTTTAATT
TGGATTAAAGAGAAAAGGGTGCTAAATTACCTATCAATCAAGCCTATCAA
TATCTATCAATCAAGCTTTAGCTTTTTAGCTGCAAACTGCATGGAGAGAT
GCGTACGATGGATCTCAGGCTTCGAAAAAGGAATTGGGTGAGGGCTAAGT
AAGCATACAGACAGTCtgatataaaattttattatctgCAAAAGTGGTAT
CCTTGGGACAAGGATAAATATTTATTGAATTTCCAGGGTAGTTTAAATCT
TCATGAATTGTATttgctttcttcttttcaagatAATCCAATACCAGAAA
AGgaactttttcaaataaaacttttcGTTTTACGTGGCTTGaacttgaat
tttcttttttatgaatGCATACCTTGTTGAGTTTTATCCGAGAAAGATAA
GAACCTGACAAAGTCCATCTCTACTGTCTTTGGTAGTTAGTTTTCTTAGG
AAGATTCCTAGGAAAACATCTTAAACAAAAGCGTACCTTGCCAGAGagtt
ttaaatgtttcttatcTCCGTTAGTAATTTAGCAACGTGTTGATAGAAAA
CATGCAAGAATTATGAAGTGATAAAAATCTTATCGAAAATATATCAGATA
CACGATcataaaagtttacaaaaaagttttatggAAATTTAGACTTGTAG
TAAAACAGATCCAGTAAATTGGGAAAAAAACCTTTCTTAGATGTCGTAGA
CCTCAAAACATAGTTACATCGTGCGTAGTACAGATGCATCTGAAAAGATT
ATATACTGACGCCGACAGACAATTTGTGACGATTGACAGACTAGGGAATA
AAGTGCTGTTGATGCATGTTTGTTTATGAAAGGCATCAAATGTCAACAAA
AATATCACAGAAAGAAATATAAGATATACAAAATACAAAGATTAAACAGC
ACGTCCTGTTGAACAGATTTTATACTCAGCTAGAGGAGacagtgtttttt
ttcttgaggGAGTGAACCCACAACCATGGTAAGGCTCTTTTTTTCCACAC
TTATTTTTTTCAAGggagaaaactttaaaaatctaGAGAGAGATTTGCTT
GCAGTAGCACTCTTTTCCCTCgaaactcaaattttcttttttggtgaGAA
AAATGACAACTTCAAATTTTGGGAATGTAAAGAAAGAGCTAACCTTTGAA
GTAACACTTCCTAAAGTGAAAAGTACATTAAAGATTCTTAGCGCATTTAC
CTGTTAGATATAATAGTGTTTTTTGTTCACTAAAAACCCTTGAAaccacc
ctcaaaacacctgtCTAAGAGGACAGTACTGAACAGATAAGATCTAATGT
AAATTTATGAAATTCTGTTTTTCTCAAATgtaaatattattttgaaactt
tgtttttcaatacgtttttttataagaaaccttGACTTTGCTCCGAGCCt
agagttccttatttttccagagaatttcagcctcaaagttccttttcGAG
TTACTTATTTTACTAAGCTGCTAAGATCGGCTTTGCTAACtgtaaaactt
ttttataaatataacaATGGACTAAAGTACAGAAAAACACGTTTATTGAA
TGTTTTTTCATCAATATCTTGTCATCTTTTAGTTTTAGCTTTTGTAAATG
TGTGAAAGTTCAAAATTAActcttgttttcttattctcagcctgagcagt
tccttaataATTCGTTATTTCTCGGactattttcagcctcgagttcctta
taaaggtgtttcttataaaaaaattgcatTATATGAAATTGATAACAAAG
GCTATAGgagttttataaaaaattacagatggaaaaaaaggatttaaaaa
gcaGAAGAAGAATTCATGTGCTTAATCTCTAATAATTTTCTATCTCTTAT
TATTTTCATCttctaaatttcttttgttttcatattttataTCCAAGGTT
CCTTTTATCTCCATAACTTTTCCATCTTCTCTTTCATTCAAAACCTTAAA
AGCTCGGAGTGTCTTCTCCCATGTTATAAGAAGGGGTGGATTAATTTAAA
GTACAAAATTGGATTTGGTTTTTCAGGGGTTTCAGGGTTTTACTCTTCGT
TATGTGGTTACAAGTCTGTTTTGGTTTGTGAAAGTTTAAATTTAATTTAG
GTtcagtaaaaatcattttttagttTAGAAGAATAGAGCAGAAAAAGTGA
AATTGAAGAATTTTTATGTGAAGATTTATTTGTGATCATTTGGGGTAGAG
TACTATTGTATTgtgttgttttgttgttgtcttTCTTCTTTCATATTTTT
CCCACGACTTTTCTTAttaattcttaaaaaatttcatttcgggGGTTTTT
CTTCGGAAGAAGACTCGTTAAAAAGACAGAGGTTTGATGGACAATAGAGT
TTTCCTGGACTAAAGGACGAAGGGAAATCGCATGGTGTTCAGTGAAGGAT
ATAGTGACTGACTATATGATAGAAACCTTCATCATTACCAAAGATCAGCT
AAGAAGTAAGGATGAAGTACCAAAGATTAGGAGGTCTGTACCCCAATTTC
AAAGTAAGAGaagattatttttcaaatactCATCAATTTAGTGGCGAAGT
AGCTCGGGCTCCACTTACACTGGATAGCGCGATTAAGggcttcactggac
tcagcgtcataagaaattatcaaaaagcaaagttaagccaaaagtagact
ctagtctagtgaCGAAGGAACAGATAAACATAAAAGAACGAAAGAAGGCA
GACAGTGAAAGATGTGTGACATAAAGAGACCGCAAGACTCGTCgtcgggg
gggggggcgttatGCACCCttgtttgtttactttgtagtACTGTCAATAC
CAAAACAGATCACACAGCATTGATCAAACGTTCATAACGACGTCCAAATA
ATGTTAGGTAGACGGTGGACTATAACGTTGTGTGTCGAATGAGTGAAAGA
TTGAAAAGGCGGTTGGAATGGAAAAAGAAGAGGCTATTTGATGAAAAGAG
ACATTGACGTATCATGAATGAGAAATGATAAGTTAGTGTTCGGTCATGAA
TGTGCAGTGATTTTTCAACGGAGAGAATCGTGATGACATGGAGATTGAGA
TATTGTGCGTGTCTGTGAGGAAGTAGCAAATCAAGAACGTCAAACCAAGA
TTGCATCTTTCCTTAATCCCCATGTGATGAAAGAATGTGCcaacaaatta
tttttgtttatgtGTTCTTTATAAGAGAAAATATTTCAGTATAGAAGTAA
GATTACATAGGTTAATAAGGAAATTGAGGTCTGGAACTGTTTAAGGTAAA
CTGAAATGTCGAGAAGAAAAGATAAAGAAGGATAGTATAAGAACTTGTAC
TGTCAAAATCACTTCACCCAAGATTTCTGGATCAAACCTTTTCGTTCCTA
TGCAGAGTATTGCATTGACCCATCATAGGAACGCCTATTACCATGTCATT
TTATCTACAGTGACGTTTCAAGTGATTAATTGGAGCTCTTTTGTGAATAA
GATTTTTAATTGCATTCCAGTATGCTTCTCGTTTCAAAACAATTGGCAAG
TTATTAATCATACCAAAAGTTGCAATTAAAGCAATAAATAGATCTGTTTT
CTATCGAAATAAGTGTATCGTTTTATTTTTGCAGATAGAAGAAAGTTTTC
TTTGAGTAGCATAAGTGGGTGGTGCCTTACTgaagaaaacaaacaaagaa
gacTAAGCAAAGTCTCAGAATAAAAAGTCGATAGTGACAAAAAGTGATGA
TCTGAAGGCTCAATATATTACAATTGAAGATACTGGTTGATTGAATCTTA
aatcaaaaatctcaaaattctaCTTTCCCAAAAACTTTAGATCGCTTTGT
TGTTAACTTTTCGCATGTCTTCTATTTTCAGAAAGGTACACAAATCAAAT
TTCGCAAAATGGCGCAAACGAACGGTCACGACGCATCCAATGGCATTGTC
TTCGGTCTCATGAACCAGCAAGGTAAATACCTGACCGCTGAGAAGTTCGG
CAACCAAATTAGTGTCACCGGAACCTCCCTCAGATCCAAACAATTATGGA
CTTTCGAACCAGAAGGTGCTGAATCAAGCAAAGGGTATTTGAGGAGCCCG
CAAAAGAACTACCTGGAGACTACAAAGACAGGGACGGTCACTTGTGAGGC
TGAGGAGAAGGAAGTCTCTCTATTGTTTGACGTAACGGTGGCTGATGATG
GTCGATGGGCTTTCAAAGATTCGTTTGGGAAATTCCTTGCAGGAAACACT
GAGAGGTTGTACACAACTATGGATTCTAAACAAGCTGATGAGTACCTCTG
GGCCATCCACATCGCTGGTCACCCACAATGCAACATGAGAAGTGTCTCAC
GCAAGCGATTTGTTCATTTGAAGGATGACCAACTGTGCGCCAATGAAGAC
ATCCCATGGGGTCACGATGCTGTCATCACACTTGAGTTCCACCGAGGGAA
ATACGCCATTCGAGATAGCAACGGTCGTTATTTGAACGGAGAAAGTGGAG
AACTGGAAACGACTTCCACAGAAGAATGTATGTTTTCAATTGCTTTACAA
GATACAGAATTCGCTTTCAAGAGTTCTTCAGGAAAATATTTGACGGTGTA
CGGTCCAGCGGGGAAGTTGATCGCTAACAAGAAAGCAATCAGTCGGGATG
AACTTTTTGCATTGGAACAGAGCAAAGCACAAGTCATGTTAACAGCAAAT
AATGGAAAGACCGCTTCCATCAAGCAAGGTAAGTGTCTCTTTCTTACAAA
TACTCCGCTAGTTGTAGGTACAATACACCCAAACTCGCAGGAATACACTT
TTTGGAGCTGGAGGTAGCAAACTTTTGGGAttctttcatctttttcttcC
TTCTATCATTCATTTTACACATCACCTCCCCTCCATTTTCTTCAAtgatt
tctcgatttttttaaagatgaaaCTTGGCTTCATACATGGTTTCAAAATC
CAATTAAACTCGGTCCAAAAAAATCACATTAAACTGAACCAATTAaagaa
attctttgaaattcTCTCAAAATGACGCAAACCTTATCTTCGAAAACGTC
ATTAATCTAAACAACTTAAAAGTTTAAAGGTAACATTTGAATCCAAAGCT
TCTAGCTCCCTTCTCCCTTCAGTGTACTCTTGAAGTAGTAGCCAACAGAC
AATTTGCATTCTTTTCTCCTCAGGAATTGACNCGAGATATGCAATCCTGT
GTAATCTTTGAGTAGTACCCAACAggcaatttgcaatttttctctCTCTT
CAGGAATCGATGTCACAGCAAATCAATTCTTGGAGCTTGGTGATTTCGGA
GATACGGAGACTTTCCAAATGGAGTTCATAGATGGGCAGCAAAACCAAGT
CACCttcttatcaaaaaataaaaagtactgGACCGCTGGAAACAAATCcg
tgacgtcatcagctgatCAGATCAGTCCTGAGTGTATCTTTGAATTGGAG
TATGAAGGAGATAAGATCGCATTGAAAGCACATAATGATAGATACATCAC
ATCAACGTCCGGAGGGAAGTTGGTTCCAACCGGTGAAACGACTTCAGATG
CCAACACTTTGTTCTTGATGCAGTTGATGAATCGACCGATCTTGGTGTTG
CGATGCGAGCATGGTTATGTTGGATTGATCGATAGCAATGATAAAGTTCA
ATGCAGCAGGGGTGGTTATGACGCAATGCTGGTGGAAGGGGATGGCCAAG
GAAGATATCGATTGAAGACATCCAAGGGAAAGAGCTGGAAGGTGGATGGC
ACCTCACATTTGGTACAATCCAGTGATGNCCAAGGAAGATATCGATTGAA
GACATCCAAGGGAAAGAGCTGGAAGGTGGATGGCACCTCACATTTGTTAC
AATCCAGTGATGAAggtgatttatttttatttgaactTTGCAGTAAGAAT
AAGATGAGGATCCAAGCCTCTAatggaaaatatttgaaaggtGACCATAA
TGGCGTCATCACTGCAAGTGCTGGTAAAGATGATCGTAACATCTTGTGGG
AATATTGATGAAGATATTTTGACCGACAGAGGATTCATTCTGGTGATAGA
CCAAATAGAAAGTAGATCAAAACAAGGAGATATCATTGACCTCTTCCTCC
AGCATTTTTGCTTCTCCATGAAGGACTTTTTGGGTATTGTTAGATATTTG
GTGAAACAACCAATTGACGAACTTtcaattagaattttttttttgtttac
atttatgtttgaaacttttgacattttctttgaactttgaaatttATTGT
ATAAATTTAATGGTAGGATAATTTACTGATTTTTAATGTATTAGTTTTAA
AACCCTTTTGTATGAATAGTTCTTGACAAAGAAAATGATAACAACGAAAT
AGAGAAACGATAGTCTTCTg Coding sequence (CDS) from alignment at scaffold_469:309734..317653+ >TCONS_00067339 ID=TCONS_00067339|Name=TCONS_00067339|organism=Clytia hemisphaerica|type=CDS|length=6156bp|location=Sequence derived from alignment at scaffold_469:309734..317653+ (Clytia hemisphaerica)
atgAACTTGGCACTAAAGCTGAAAGGTACACAAATCAAATTTCGCAAAAT
GGCGCAAACGAACGGTCACGACGCATCCAATGGCATTGTCTTCGGTCTCA
TGAACCAGCAAGGTAAATACCTGACCGCTGAGAAGTTCGGCAACCAAATT
AGTGTCACCGGAACCTCCCTCAGATCCAAACAATTATGGACTTTCGAACC
AGAAGGTGCTGAATCAAGCAAAGGGTATTTGAGGAGCCCGCAAAAGAACT
ACCTGGAGACTACAAAGACAGGGACGGTCACTTGTGAGGCTGAGGAGAAG
GAAGTCTCTCTATTGTTTGACGTAACGGTGGCTGATGATGGTCGATGGGC
TTTCAAAGATTCGTTTGGGAAATTCCTTGCAGGAAACACTGAGAGGTTGT
ACACAACTATGGATTCTAAACAAGCTGATGAGTACCTCTGGGCCATCCAC
ATCGCTGGTCACCCACAATGCAACATGAGAAGTGTCTCACGCAAGCGATT
TGTTCATTTGAAGGATGACCAACTGTGCGCCAATGAAGACATCCCATGGG
GTCACGATGCTGTCATCACACTTGAGTTCCACCGAGGGAAATACGCCATT
CGAGATAGCAACGGTCGTTATTTGAACGGAGAAAGTGGAGAACTGGAAAC
GACTTCCACAGAAGAATGTATGTTTTCAATTGCTTTACAAGATACAGAAT
TCGCTTTCAAGAGTTCTTCAGGAAAATATTTGACGGTGTACGGTCCAGCG
GGGAAGTTGATCGCTAACAAGAAAGCAATCAGTCGGGATGAACTTTTTGC
ATTGGAACAGAGCAAAGCACAAGTCATGTTAACAGCAAATAATGGAAAGA
CCGCTTCCATCAAGCAAGGAATCGATGTCACAGCAAATCAATTCTTGGAG
CTTGGTGATTTCGGAGATACGGAGACTTTCCAAATGGAGTTCATAGATGG
GCAGCAAAACCAAGTCACCttcttatcaaaaaataaaaagtactgGACCG
CTGGAAACAAATCcgtgacgtcatcagctgatCAGATCAGTCCTGAGTGT
ATCTTTGAATTGGAGTATGAAGGAGATAAGATCGCATTGAAAGCACATAA
TGATAGATACATCACATCAACGTCCGGAGGGAAGTTGGTTCCAACCGGTG
AAACGACTTCAGATGCCAACACTTTGTTCTTGATGCAGTTGATGAATCGA
CCGATCTTGGTGTTGCGATGCGAGCATGGTTATGTTGGATTGATCGATAG
CAATGATAAAGTTCAATGCAGCAGGGGTGGTTATGACGCAATGCTGGTGG
AAGGGGATGGCCAAGGAAGATATCGATTGAAGACATCCAAGGGAAAGAGC
TGGAAGGTGGATGGCACCTCACATTTGTTACAATCCAGTGATGAAggtga
tttatttttatttgaactTTGCAGTAAGAATAAGATGAGGATCCAAGCCT
CTAatggaaaatatttgaaaggtGACCATAATGGCGTCATCACTGCAAGT
GCTGGTAAAGATGATCGTAACATCTTGTGGGAATATTGAatgAACTTGGC
ACTAAAGCTGAAAGGTACACAAATCAAATTTCGCAAAATGGCGCAAACGA
ACGGTCACGACGCATCCAATGGCATTGTCTTCGGTCTCATGAACCAGCAA
GGTAAATACCTGACCGCTGAGAAGTTCGGCAACCAAATTAGTGTCACCGG
AACCTCCCTCAGATCCAAACAATTATGGACTTTCGAACCAGAAGGTGCTG
AATCAAGCAAAGGGTATTTGAGGAGCCCGCAAAAGAACTACCTGGAGACT
ACAAAGACAGGGACGGTCACTTGTGAGGCTGAGGAGAAGGAAGTCTCTCT
ATTGTTTGACGTAACGGTGGCTGATGATGGTCGATGGGCTTTCAAAGATT
CGTTTGGGAAATTCCTTGCAGGAAACACTGAGAGGTTGTACACAACTATG
GATTCTAAACAAGCTGATGAGTACCTCTGGGCCATCCACATCGCTGGTCA
CCCACAATGCAACATGAGAAGTGTCTCACGCAAGCGATTTGTTCATTTGA
AGGATGACCAACTGTGCGCCAATGAAGACATCCCATGGGGTCACGATGCT
GTCATCACACTTGAGTTCCACCGAGGGAAATACGCCATTCGAGATAGCAA
CGGTCGTTATTTGAACGGAGAAAGTGGAGAACTGGAAACGACTTCCACAG
AAGAATGTATGTTTTCAATTGCTTTACAAGATACAGAATTCGCTTTCAAG
AGTTCTTCAGGAAAATATTTGACGGTGTACGGTCCAGCGGGGAAGTTGAT
CGCTAACAAGAAAGCAATCAGTCGGGATGAACTTTTTGCATTGGAACAGA
GCAAAGCACAAGTCATGTTAACAGCAAATAATGGAAAGACCGCTTCCATC
AAGCAAGGAATCGATGTCACAGCAAATCAATTCTTGGAGCTTGGTGATTT
CGGAGATACGGAGACTTTCCAAATGGAGTTCATAGATGGGCAGCAAAACC
AAGTCACCttcttatcaaaaaataaaaagtactgGACCGCTGGAAACAAA
TCcgtgacgtcatcagctgatCAGATCAGTCCTGAGTGTATCTTTGAATT
GGAGTATGAAGGAGATAAGATCGCATTGAAAGCACATAATGATAGATACA
TCACATCAACGTCCGGAGGGAAGTTGGTTCCAACCGGTGAAACGACTTCA
GATGCCAACACTTTGTTCTTGATGCAGTTGATGAATCGACCGATCTTGGT
GTTGCGATGCGAGCATGGTTATGTTGGATTGATCGATAGCAATGATAAAG
TTCAATGCAGCAGGGGTGGTTATGACGCAATGCTGGTGGAAGGGGATGGC
CAAGGAAGATATCGATTGAAGACATCCAAGGGAAAGAGCTGGAAGGTGGA
TGGCACCTCACATTTGTTACAATCCAGTGATGAAggtgatttatttttat
ttgaactTTGCAGTAAGAATAAGATGAGGATCCAAGCCTCTAatggaaaa
tatttgaaaggtGACCATAATGGCGTCATCACTGCAAGTGCTGGTAAAGA
TGATCGTAACATCTTGTGGGAATATTGAatgAACTTGGCACTAAAGCTGA
AAGGTACACAAATCAAATTTCGCAAAATGGCGCAAACGAACGGTCACGAC
GCATCCAATGGCATTGTCTTCGGTCTCATGAACCAGCAAGGTAAATACCT
GACCGCTGAGAAGTTCGGCAACCAAATTAGTGTCACCGGAACCTCCCTCA
GATCCAAACAATTATGGACTTTCGAACCAGAAGGTGCTGAATCAAGCAAA
GGGTATTTGAGGAGCCCGCAAAAGAACTACCTGGAGACTACAAAGACAGG
GACGGTCACTTGTGAGGCTGAGGAGAAGGAAGTCTCTCTATTGTTTGACG
TAACGGTGGCTGATGATGGTCGATGGGCTTTCAAAGATTCGTTTGGGAAA
TTCCTTGCAGGAAACACTGAGAGGTTGTACACAACTATGGATTCTAAACA
AGCTGATGAGTACCTCTGGGCCATCCACATCGCTGGTCACCCACAATGCA
ACATGAGAAGTGTCTCACGCAAGCGATTTGTTCATTTGAAGGATGACCAA
CTGTGCGCCAATGAAGACATCCCATGGGGTCACGATGCTGTCATCACACT
TGAGTTCCACCGAGGGAAATACGCCATTCGAGATAGCAACGGTCGTTATT
TGAACGGAGAAAGTGGAGAACTGGAAACGACTTCCACAGAAGAATGTATG
TTTTCAATTGCTTTACAAGATACAGAATTCGCTTTCAAGAGTTCTTCAGG
AAAATATTTGACGGTGTACGGTCCAGCGGGGAAGTTGATCGCTAACAAGA
AAGCAATCAGTCGGGATGAACTTTTTGCATTGGAACAGAGCAAAGCACAA
GTCATGTTAACAGCAAATAATGGAAAGACCGCTTCCATCAAGCAAGGAAT
CGATGTCACAGCAAATCAATTCTTGGAGCTTGGTGATTTCGGAGATACGG
AGACTTTCCAAATGGAGTTCATAGATGGGCAGCAAAACCAAGTCACCttc
ttatcaaaaaataaaaagtactgGACCGCTGGAAACAAATCcgtgacgtc
atcagctgatCAGATCAGTCCTGAGTGTATCTTTGAATTGGAGTATGAAG
GAGATAAGATCGCATTGAAAGCACATAATGATAGATACATCACATCAACG
TCCGGAGGGAAGTTGGTTCCAACCGGTGAAACGACTTCAGATGCCAACAC
TTTGTTCTTGATGCAGTTGATGAATCGACCGATCTTGGTGTTGCGATGCG
AGCATGGTTATGTTGGATTGATCGATAGCAATGATAAAGTTCAATGCAGC
AGGGGTGGTTATGACGCAATGCTGGTGGAAGGGGATGGCCAAGGAAGATA
TCGATTGAAGACATCCAAGGGAAAGAGCTGGAAGGTGGATGGCACCTCAC
ATTTGTTACAATCCAGTGATGAAggtgatttatttttatttgaactTTGC
AGTAAGAATAAGATGAGGATCCAAGCCTCTAatggaaaatatttgaaagg
tGACCATAATGGCGTCATCACTGCAAGTGCTGGTAAAGATGATCGTAACA
TCTTGTGGGAATATTGAatgAACTTGGCACTAAAGCTGAAAGGTACACAA
ATCAAATTTCGCAAAATGGCGCAAACGAACGGTCACGACGCATCCAATGG
CATTGTCTTCGGTCTCATGAACCAGCAAGGTAAATACCTGACCGCTGAGA
AGTTCGGCAACCAAATTAGTGTCACCGGAACCTCCCTCAGATCCAAACAA
TTATGGACTTTCGAACCAGAAGGTGCTGAATCAAGCAAAGGGTATTTGAG
GAGCCCGCAAAAGAACTACCTGGAGACTACAAAGACAGGGACGGTCACTT
GTGAGGCTGAGGAGAAGGAAGTCTCTCTATTGTTTGACGTAACGGTGGCT
GATGATGGTCGATGGGCTTTCAAAGATTCGTTTGGGAAATTCCTTGCAGG
AAACACTGAGAGGTTGTACACAACTATGGATTCTAAACAAGCTGATGAGT
ACCTCTGGGCCATCCACATCGCTGGTCACCCACAATGCAACATGAGAAGT
GTCTCACGCAAGCGATTTGTTCATTTGAAGGATGACCAACTGTGCGCCAA
TGAAGACATCCCATGGGGTCACGATGCTGTCATCACACTTGAGTTCCACC
GAGGGAAATACGCCATTCGAGATAGCAACGGTCGTTATTTGAACGGAGAA
AGTGGAGAACTGGAAACGACTTCCACAGAAGAATGTATGTTTTCAATTGC
TTTACAAGATACAGAATTCGCTTTCAAGAGTTCTTCAGGAAAATATTTGA
CGGTGTACGGTCCAGCGGGGAAGTTGATCGCTAACAAGAAAGCAATCAGT
CGGGATGAACTTTTTGCATTGGAACAGAGCAAAGCACAAGTCATGTTAAC
AGCAAATAATGGAAAGACCGCTTCCATCAAGCAAGGAATCGATGTCACAG
CAAATCAATTCTTGGAGCTTGGTGATTTCGGAGATACGGAGACTTTCCAA
ATGGAGTTCATAGATGGGCAGCAAAACCAAGTCACCttcttatcaaaaaa
taaaaagtactgGACCGCTGGAAACAAATCcgtgacgtcatcagctgatC
AGATCAGTCCTGAGTGTATCTTTGAATTGGAGTATGAAGGAGATAAGATC
GCATTGAAAGCACATAATGATAGATACATCACATCAACGTCCGGAGGGAA
GTTGGTTCCAACCGGTGAAACGACTTCAGATGCCAACACTTTGTTCTTGA
TGCAGTTGATGAATCGACCGATCTTGGTGTTGCGATGCGAGCATGGTTAT
GTTGGATTGATCGATAGCAATGATAAAGTTCAATGCAGCAGGGGTGGTTA
TGACGCAATGCTGGTGGAAGGGGATGGCCAAGGAAGATATCGATTGAAGA
CATCCAAGGGAAAGAGCTGGAAGGTGGATGGCACCTCACATTTGTTACAA
TCCAGTGATGAAggtgatttatttttatttgaactTTGCAGTAAGAATAA
GATGAGGATCCAAGCCTCTAatggaaaatatttgaaaggtGACCATAATG
GCGTCATCACTGCAAGTGCTGGTAAAGATGATCGTAACATCTTGTGGGAA
TATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067339-exon-scaffold_469-1491911889:309734..309775 | TCONS_00067339-exon-scaffold_469-1491911889:309734..309775 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1510915933:309734..309775 | TCONS_00067339-exon-scaffold_469-1510915933:309734..309775 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1575043694:309734..309775 | TCONS_00067339-exon-scaffold_469-1575043694:309734..309775 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1491911889:315165..316011 | TCONS_00067339-exon-scaffold_469-1491911889:315165..316011 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1510915933:315165..316011 | TCONS_00067339-exon-scaffold_469-1510915933:315165..316011 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1575043694:315165..316011 | TCONS_00067339-exon-scaffold_469-1575043694:315165..316011 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1491911889:316537..317002 | TCONS_00067339-exon-scaffold_469-1491911889:316537..317002 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1510915933:316537..317002 | TCONS_00067339-exon-scaffold_469-1510915933:316537..317002 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1575043694:316537..317002 | TCONS_00067339-exon-scaffold_469-1575043694:316537..317002 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1491911889:317087..317653 | TCONS_00067339-exon-scaffold_469-1491911889:317087..317653 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1510915933:317087..317653 | TCONS_00067339-exon-scaffold_469-1510915933:317087..317653 | Clytia hemisphaerica | exon |
| TCONS_00067339-exon-scaffold_469-1575043694:317087..317653 | TCONS_00067339-exon-scaffold_469-1575043694:317087..317653 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:309734..317653 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030674 | protein binding, bridging |
| GO:0051015 | actin filament binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0051015 |
actin filament binding |
| molecular_function |
GO:0030674 |
protein binding, bridging |
Blast
BLAST of TCONS_00067339 vs. Swiss-Prot (Human)
Match: FSCN1 (Fascin OS=Homo sapiens GN=FSCN1 PE=1 SV=3) HSP 1 Score: 331.257 bits (848), Expect = 3.545e-105 Identity = 193/500 (38.60%), Postives = 280/500 (56.00%), Query Frame = 1
Query: 82 NGHDASNGIVFGLMNQQGKYLTAEKFGNQISVTGTSLRSKQLWTFE--PEGAESSKGYLRSPQKNYLETTKTGTVTCEAEEKEVSLLFDVTVADDGRWAFK-DSFGKFLAGNTERLYTTMDSKQADEYLWAIHIAGHPQCNMRSVSRKRFVHL---KDDQLCANEDIPWGHDAVITLEFHRGKYAIRDSNGRYLNXXXXXXXXXXXXXCMFSIALQDTEFAFKSSSGKYLTVYGPAGKLIANKKA-ISRDELFALEQSKAQVMLTANNGKTASIKQGIDVTANQFLELGDFGDTETFQMEFIDGQQNQVTFLSKNKKYWT-AGNKSVTSSADQISPECIFELEYEGDKIALKAHNDRYITSTSGGKLVPTGETTSDANTLFLMQLMNRPILVLRCEHGYVGLIDSNDKVQCSRGGYDAMLVEGDGQGRYRLKTSKGKSWKVDGTSHLLQSSDEGDLFLFELCSKNKMRIQASNGKYLKGDHNGVITASAGKDDRNILWEY 1557
NG + I FGL+N KYLTAE FG +++ + +SL+ KQ+WT E P+ A S+ LRS YL K G VTCE E F + DDGRW+ + ++ ++ G +RL + E W++HIA HPQ N+ SV+RKR+ HL D++ + D+PWG D++ITL F +Y+++ ++ R+L + + +++ + + AF+ G+YL GP+G L A K + +DELFALEQS AQV+L A N + S +QG+D++ANQ E D ETFQ+E ID + F + KYWT V S+A + C F++E+ +I L+A N +++TS G+L + ET D+ LFLM+L+NRPI+V R EHG++G + +R YD +E + G Y +K S GK W V S + S D F FE C NK+ I+ G+YLKGDH GV+ ASA D LWEY
Sbjct: 4 NGTAEAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEK-WSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPAT-GYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEET----DQETFQLE-IDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSE-LFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFN-DGAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKV-GGRYLKGDHAGVLKASAETVDPASLWEY 493
The following BLAST results are available for this feature:
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