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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067336 ID=TCONS_00067336|Name=TCONS_00067336|organism=Clytia hemisphaerica|type=transcript|length=1950bp
ATTTGGTTTTACTTGGATCAATCAGATCAGTTTAAGAAGTAACAGAGAGT
GGAATTTCAAGTTCTCTGAACTTCAGACCAAGTGTAAAATAAAATGGCAC
CATCAAAAGATAAGGAATCTACCCGACCACGTAGAAACAATCCATTTGCT
GAAGATGAACGAGATGAGGTTGATGATTCCACCCAGACAGATGGTGATCC
GACCGTTCAAGTGAATGTGCTGGTAAATGAGGAGAAGATTGCTGGAACAC
GAATTGTCGAGACCATTTTAAATACTGGATTACCAGCTAACCAGCGCAGA
CATTATTATGGACCACTCTCCGAACAAGAAAGACTTGCACAACGCGTTAT
CTCAAATGGTATCAACTGGGGTCGCATTGCTACCATCTTGATTCTTGGAG
CACGAATGTTGACTTCAAGTGGATACGAAATCGCAGACCTTGTTTTCACA
TTTTTACTAGAGTTCATAACAGAAAAGCTCTTTGCCTGGATCTTAGATAG
TGGTGGTTGGAGGTCCGCTATCGATTATGCTGAGAAGATTTGTCAACATC
CAGCAATCCCTGCTGTTGTGAATCCAACAAATATTGCTACTGTTTGCGCT
ATTGCTGCTGTTGTGGGCTTTATCTACTACAAGTACACCTCCAAGTAGTG
TCTGGTATCTTGTGATCCAAGAATGTTCAAGCTTGATGTCCCTTGATGCT
CATATGGTAATGGTTGCAAGGTTAACCGAAATGCCCAAAGAGCGTTTTTC
TCGATATTGGAAGATGATGTTAAAGAGAAACATGTTTTTGAATCCGATTC
TTTTTGGCTCCTGATTTTGGAGAACAGTTGGCTTTACAGAGCAAAATTTG
GTTCAAAAGGTTATTATCCTATTATGATTGTTGGAAATGAACcgttgaat
tttttgaaattatttaccGTGAAGTGTATTTACAATGGAATTGACACCAT
GCTTGGCACCGCACGAACAAATCTTTGATAACAGAACATGATTTTTATCG
CATCTCATCTTATTGCAAAGGAGGTAAATCACACTTACATACGATAAAAC
AGAAATTTTATGAATCAGATTggttattttttatgttttttattgaaatg
tttttattattgttttaaaTTATCAACTCATCTAGTTAGGACATAATTCA
CTTAAAGTCTGTCTCTAAAGGTATGtctacattttattttttggacattt
tctcaGCACATGTCAGAAagtttgaaagatattttcaaggaGAATAATAg
gataaaagatttttaaaaaatttgaaaaatgaagaagaaaaatcaaaatc
taaaaaatgaagatttcttcGACTTTTTAAAACTCATGAAATTCTTGAGA
ATGTTTGAAGcttgctgatttcaaatctgtATGTCACGATTTTTAAAAca
gtagaaaaaatcttcatatttttttcattttcattttcatttttcttctt
tatttttcaatttttcaaatatcttcTACCCTATAGATTATTTTCCTTAA
AGAAAATAACTTTCCAACATAGCATGAATAGGGGctgagaaaatattcaa
aaaccaAAGTGTCCACTgtcttttgagacagactttagaatCATAGCTTT
CCAAAAGAGACCCTTTTTGCCCTATCGATGTAAGTAATTCATTTAGCAGG
TTATTTCTAAGAAAAGTACGAAAATATTCGAAATCAGACCCAAACAGACT
GGTTTTCGATGAGCTAATAACGCAATCTTTGCTTTTTTATGTCACCGGTT
CTTTTAGCAGGAATGATATTTTGATGTACCAGTAGGTCctttttgtaatt
attacaGTTCTTATTTTAACTTTATTAGCGAATTTATAGAAATAGAGTAT
TTATGTAATTCGTTTTTTATATCATCCAGATGTCATTACTCATAGTTTTT
TATGTTacaaaaaaagagaatttcttGCTGATTCGATTGTAAGGAATTTG Run BLAST on NCBI transcript from alignment at scaffold_469:155818..162238+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067336 ID=TCONS_00067336|Name=TCONS_00067336|organism=Clytia hemisphaerica|type=transcript|length=6421bp|location=Sequence derived from alignment at scaffold_469:155818..162238+ (Clytia hemisphaerica)
ATTTGGTTTTACTTGGATCAATCAGATCAGTTTAAGAAGTAACAGAGAGT
GGAATTTCAAGTTCTCTGAACTTCAGAGTACCTAGgttattttctaagaa
atctttTCGCTGTCAGCTGTCTTTCCCAGCCTCAGCCCTCGACCAGGTCA
GGATGGATAGCGGGTATGAGActggaaagggtttgtttctatttctattt
ctatttggttgagttgcaggaggctttaatGCCTattttcacAACTATAG
ACGTTTTCatccgtcagcaccttgaactgactacccaattccccccCTCA
CGTCACATGGCATGTCAAGGGTTGACCCGGCCCGGgcaaaggttcattca
cttgccaagtgaaccactGCGAGTGGGAACCGAATCTCAGTcacctgtgc
agcaaccaaggtcaatgaccactataccacagcgccttaaaggtacggaa
aatcttgtgctTGCTCACaaaactgcctaactttccgaagctaATTGtaa
taggaccctgccgacgcaccggacttaacgagcaccggacacgcgaaagt
ccagtgtaaaatgagaatttttttaccaccggacaatctctacaccggac
ttaaggaagtcggatgtccggtgtcggagaaggctattttttcccaccgg
acaatcaaaacaacacACCAGACATATGCgtgtccggtgcgtccggtgtt
tcttaatttttcgtttcataaatgtccggcgtccaaaattccctgcatgc
aacaccggactgacaccggacttattgcgtccggtgtagcgaaaggatac
tttttgccaccggacaaatacaccggacagtccggtgcgtcggcagggtc
ctattgtaaaaaaaaaaatttttttgttaaatatttgcgaaagtaattct
aatgaatttatgcaaataaatatatagaaatagaaatagaaatgtaatag
accttttcgcctttccatccgccatcttgaattgtatgcaaaaatacagg
aacaaaaatgccgtggttggatttagttgtgAAGTATGTAAGGGGCGACG
TCTATATTCAAAGTCGCCACGcataacgggaaaagaccgttagtgggtag
gtatatcggaatgttgagagttagctgtggcattgatgaccaaaatgaaa
CTCCACTAAAAATTCCAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCAAATCATGAAGACCGTTAAGGTGGTGGGTAGGTATGTTT
TGAAagtaacggtcttttcccgttacgcgtggcaagattgaatatggacg
tcgcccctaaaacatatgcaagtttacacaaagattaaaaagacaacaaa
ggatcttataaataaatattataccgtaagttggtctaatctcgacaccg
gatctgtcaaataatcaaaacaaaccttgaatgaaattcttggtatcatt
cttatcaaacaagttcatccatcaaactagaagttcagtaaacattgcaa
tcctttcaattaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
caatcctttcaattaaaaaaacagccaaattataagcagttttacacaac
acacgaaacgcatgcaaacttcctcgtaactttctcgtgtccatcattac
aattttacaactttattacgctgataaaaataattcgcgcgcttagtcga
cctggtttccatttccttattatttattgcaagcacacgctctaggcgct
aggaggccacgttaaacttctaggcgccgcacctagcacacacggtccct
tttcaaattcataaggaaaccgggtttttttaattattttcgattcacag
taaaaaggtctactaaaaaattcctcccgtgcaaaatgttgttgtgattt
gggcatcttcgttgaaagcatgctaattagttttttagtgattactacat
cgttaaagtgttcttttcaaatataagtaatNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtacaatttagtgattgattgata
actttggtatgtatttgtttatgtttgattttttatttcgaagaccagcc
tacagctatgttgAGATTAgaagacgtatgtcgatattagacgatcctac
ggtaatcattagaacaataaaagatggaaatttttaatccaaaaagaaat
atttacagaataacaaaagccttttagaaatttgttcttaaagacatagc
atattttgttttcatgccATGAGTTTTTTAAACTCCacaaagacggagta
cacacatcaaactttcaaaacacgcaaactaaaagcagtaattatgacgt
cacacattatcaatgttttgatttgatcacccaggagaataatttaccgt
cagccaaataaggattattttttacctttgcaggtgatttttcagtttga
gtttatgtctaatgttatggtcttttgaagtgcttgttctaagaggtgag
tgaatataattgtttttagttttcaagagaagcaaatttaatctttcttc
tacaagatgtcgctttaatataatgccaattatgcatgtaagttttattt
taatactttcttttttcatatgttttgcatactttctaagggaatttcNC
AAGAGAAGCAAATGTGATAGAGTGCATCTGTCAACCCCCAAATTAAATAC
AGTACACCCAAAAATCCGTACACCCAAGGTAAAAAGTAATGCAATCATAG
TATGCAATATTAACCATAACAAAAGACTAAAAACTGGTACTACGTAAACA
GGGAGAAAGAAGAGTCAATAAAATATGAGACATGATTCCCTCTTCATAAA
TGTCATGAATTTCTTCTGTGTCAGTGCTCAGCGCAGCTAAGAGGCCAACT
ATCTAACAGATGATTATTCTCAATACCTAAGTATATGTTTAGTAGAATCA
CAATGGgcaacacccctccaacccccacctgaaaaaggtcacCTCCACCT
GAAATCTGTTATCAGCCCAACCCCCACCTTATTCAACAATCCATACCTAA
ATTGTGGTCATAAGTCCCTAATACTTCAAACTGGAGAGAAAGAGActaga
gaaaaacaaaactttcaaaatggattacgttttttcaaaatttatttcat
aatCATAGTAAAAGCTTTTCGGCTACGCCATCagtacaaaaatgtttttt
tattattctcTAGTTTGtgcaaaaatgattgaaaatgaCAGAATAAATTC
AGAAACTTTGACAACGAACCTTCGCCTGAAAAATTTAACACCTGCCTACA
TAGGGGTTATCTCCACCTGAAATTTCTCATTAACCCAAATCCCACCTTTT
TTAACAAATCTGAAAATCCTTTTGCCATAGCCAGGTCATTGAGGCTAACC
CCCTCATGAAAATGACTTCATATGAATAACTCCTTTAAAAAGATGCTAGA
ACCTAAAGGTTTGCTCCCTACTACTATAACAGAAATAGAATTTCACTAAT
TATGTGCGAATGGTTTTAGATTCAAAAGTATGTGCCACTTTTATCTGAGT
CAATTTAGCAGAAAGAAGAGTGATAGACACTTTTGTGTCCAATGGTGTTT
TTTCTATgaaattataaataaaaacaaatttttgtatatTCCTCATTATT
CTTTTCAAGCCAAGTGTAAAATAAAATGGCACCATCAAAAGATAAGGAAT
CTACCCGACCACGTAGAAACAATCCATTTGCTGAAGATGAACGAGATGAG
GTTGATGATTCCACCCAGACAGATGGTGATCCGACCGTTCAAGTGAATGT
GCTGGTAAATGAGGAGAAGATTGCTGGAACACGAATTGTCGAGACCATTT
TAAATACTGGATTACCAGCTAACCAGCGCAGACATTATTATGGACCACTC
TCCGAACAAGAAAGGTAGCCCTTTAAAACTTACCATTTGTAAAATATAGA
AGACaaggttttaaatgtttttaacgTTAGAAACTTTTAGCAACATGCAT
CTATCTGTTAAAGTTAATaaagtgaaatttttatttttttcagggtTGTA
TCCGACAGACTTCTAGTTATTGCTGATGCTTTCAACGAACAAATTGAAGA
TGCTCTTGGCTCGCTGAGGGATATTGTACCAGCTAATCCTGAAAGTAAAT
TTAATCTTTTCAAAAGACTTGCACAACGCGTTATCTCAAATGGTATCAAC
TGGGGTCGCATTGCTACCATCTTGATTCTTGGAGCACGAATGTTGACTTC
AAGTGGATACGAAATCGCAGACCTTGTTTTCACATTTTTACTAGAGTTCA
TAACAGAAAAGCTCTTTGCCTGGATCTTAGATAGTGGTGGTTGGGTAAGT
TGTTTTTTCTCACTCCAAGAATGCTATCGAATTTTAAGAAGGAACTTAAA
AAGAACTTAATTTTGAGAGCTATTTTTGGGTAAAGAAAATCAAGCTTAAA
GCAGGAACTAGTAGGAATTGATCTTCGAGCTATtttcttgtgatttttga
aaatttttgcaaaattatgagaaaaaGCCGCAAAGACGTGAAAGCATTTG
ATAGCAAATTTTCACTATACACTTTTTATAGAGGTCCGCTATCGATTATG
CTGAGAAGATTTGTCAACATCCAGCAATCCCTGCTGTTGTGAATCCAACA
AATATTGCTACTGTTTGCGCTATTGCTGCTGTTGTGGGCTTTATCTACTA
CAAGTACACCTCCAAGTAGTGTCTGGTATCTTGTGATCCAAGAATGTTCA
AGCTTGATGTCCCTTGATGCTCATATGGTAATGGTTGCAAGGTTAACCGA
AATGCCCAAAGAGCGTTTTTCTCGATATTGGAAGATGATGTTAAAGAGAA
ACATGTTTTTGAATCCGATTCTTTTTGGCTCCTGATTTTGGAGAACAGTT
GGCTTTACAGAGCAAAATTTGGTTCAAAAGGTTATTATCCTATTATGATT
GTTGGAAATGAACcgttgaattttttgaaattatttaccGTGAAGTGTAT
TTACAATGGAATTGACACCATGCTTGGCACCGCACGAACAAATCTTTGAT
AACAGAACATGATTTTTATCGCATCTCATCTTATTGCAAAGGAGGTAAAT
CACACTTACATACGATAAAACAGAAATTTTATGAATCAGATTggttattt
tttatgttttttattgaaatgtttttattattgttttaaaTTATCAACTC
ATCTAGTTAGGACATAATTCACTTAAAGTCTGTCTCTAAAGGTATGtcta
cattttattttttggacattttctcaGCACATGTCAGAAagtttgaaaga
tattttcaaggaGAATAATAggataaaagatttttaaaaaatttgaaaaa
tgaagaagaaaaatcaaaatctaaaaaatgaagatttcttcGACTTTTTA
AAACTCATGAAATTCTTGAGAATGTTTGAAGcttgctgatttcaaatctg
tATGTCACGATTTTTAAAAcagtagaaaaaatcttcatatttttttcatt
ttcattttcatttttcttctttatttttcaatttttcaaatatcttcTAC
CCTATAGATTATTTTCCTTAAAGAAAATAACTTTCCAACATAGCATGAAT
AGGGGctgagaaaatattcaaaaaccaAAGTGTCCACTgtcttttgagac
agactttagaatCATAGCTTTCCAAAAGAGACCCTTTTTGCCCTATCGAT
GTAAGTAATTCATTTAGCAGGTTATTTCTAAGAAAAGTACGAAAATATTC
GAAATCAGACCCAAACAGACTGGTTTTCGATGAGCTAATAACGCAATCTT
TGCTTTTTTATGTCACCGGTTCTTTTAGCAGGAATGATATTTTGATGTAC
CAGTAGGTCctttttgtaattattacaGTTCTTATTTTAACTTTATTAGC
GAATTTATAGAAATAGAGTATTTATGTAATTCGTTTTTTATATCATCCAG
ATGTCATTACTCATAGTTTTTTATGTTacaaaaaaagagaatttcttGCT
GATTCGATTGTAAGGAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067336-exon-scaffold_469-1491911889:155818..155894 | TCONS_00067336-exon-scaffold_469-1491911889:155818..155894 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1510915933:155818..155894 | TCONS_00067336-exon-scaffold_469-1510915933:155818..155894 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1575043694:155818..155894 | TCONS_00067336-exon-scaffold_469-1575043694:155818..155894 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1491911889:159877..160131 | TCONS_00067336-exon-scaffold_469-1491911889:159877..160131 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1510915933:159877..160131 | TCONS_00067336-exon-scaffold_469-1510915933:159877..160131 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1575043694:159877..160131 | TCONS_00067336-exon-scaffold_469-1575043694:159877..160131 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1491911889:160384..160561 | TCONS_00067336-exon-scaffold_469-1491911889:160384..160561 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1510915933:160384..160561 | TCONS_00067336-exon-scaffold_469-1510915933:160384..160561 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1575043694:160384..160561 | TCONS_00067336-exon-scaffold_469-1575043694:160384..160561 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1491911889:160799..162238 | TCONS_00067336-exon-scaffold_469-1491911889:160799..162238 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1510915933:160799..162238 | TCONS_00067336-exon-scaffold_469-1510915933:160799..162238 | Clytia hemisphaerica | exon |
| TCONS_00067336-exon-scaffold_469-1575043694:160799..162238 | TCONS_00067336-exon-scaffold_469-1575043694:160799..162238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:155818..162238 + |
Blast
The following BLAST results are available for this feature:
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