XLOC_042079 (gene) - C. hemisphaerica

Overview
NameXLOC_042079
Unique NameXLOC_042079
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_469:155766..162238+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042079 ID=XLOC_042079|Name=XLOC_042079|organism=Clytia hemisphaerica|type=gene|length=6473bp|location=Sequence derived from alignment at scaffold_469:155766..162238+ (Clytia hemisphaerica)
ACGCTCAACGACAACGTATACTATACTTTATATTCTCAAGGAATTGGAAT
TGATTTGGTTTTACTTGGATCAATCAGATCAGTTTAAGAAGTAACAGAGA
GTGGAATTTCAAGTTCTCTGAACTTCAGAGTACCTAGgttattttctaag
aaatctttTCGCTGTCAGCTGTCTTTCCCAGCCTCAGCCCTCGACCAGGT
CAGGATGGATAGCGGGTATGAGActggaaagggtttgtttctatttctat
ttctatttggttgagttgcaggaggctttaatGCCTattttcacAACTAT
AGACGTTTTCatccgtcagcaccttgaactgactacccaattccccccCT
CACGTCACATGGCATGTCAAGGGTTGACCCGGCCCGGgcaaaggttcatt
cacttgccaagtgaaccactGCGAGTGGGAACCGAATCTCAGTcacctgt
gcagcaaccaaggtcaatgaccactataccacagcgccttaaaggtacgg
aaaatcttgtgctTGCTCACaaaactgcctaactttccgaagctaATTGt
aataggaccctgccgacgcaccggacttaacgagcaccggacacgcgaaa
gtccagtgtaaaatgagaatttttttaccaccggacaatctctacaccgg
acttaaggaagtcggatgtccggtgtcggagaaggctattttttcccacc
ggacaatcaaaacaacacACCAGACATATGCgtgtccggtgcgtccggtg
tttcttaatttttcgtttcataaatgtccggcgtccaaaattccctgcat
gcaacaccggactgacaccggacttattgcgtccggtgtagcgaaaggat
actttttgccaccggacaaatacaccggacagtccggtgcgtcggcaggg
tcctattgtaaaaaaaaaaatttttttgttaaatatttgcgaaagtaatt
ctaatgaatttatgcaaataaatatatagaaatagaaatagaaatgtaat
agaccttttcgcctttccatccgccatcttgaattgtatgcaaaaataca
ggaacaaaaatgccgtggttggatttagttgtgAAGTATGTAAGGGGCGA
CGTCTATATTCAAAGTCGCCACGcataacgggaaaagaccgttagtgggt
aggtatatcggaatgttgagagttagctgtggcattgatgaccaaaatga
aaCTCCACTAAAAATTCCAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCAAATCATGAAGACCGTTAAGGTGGTGGGTAGGTATGT
TTTGAAagtaacggtcttttcccgttacgcgtggcaagattgaatatgga
cgtcgcccctaaaacatatgcaagtttacacaaagattaaaaagacaaca
aaggatcttataaataaatattataccgtaagttggtctaatctcgacac
cggatctgtcaaataatcaaaacaaaccttgaatgaaattcttggtatca
ttcttatcaaacaagttcatccatcaaactagaagttcagtaaacattgc
aatcctttcaattaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcaatcctttcaattaaaaaaacagccaaattataagcagttttacaca
acacacgaaacgcatgcaaacttcctcgtaactttctcgtgtccatcatt
acaattttacaactttattacgctgataaaaataattcgcgcgcttagtc
gacctggtttccatttccttattatttattgcaagcacacgctctaggcg
ctaggaggccacgttaaacttctaggcgccgcacctagcacacacggtcc
cttttcaaattcataaggaaaccgggtttttttaattattttcgattcac
agtaaaaaggtctactaaaaaattcctcccgtgcaaaatgttgttgtgat
ttgggcatcttcgttgaaagcatgctaattagttttttagtgattactac
atcgttaaagtgttcttttcaaatataagtaatNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtacaatttagtgattgattga
taactttggtatgtatttgtttatgtttgattttttatttcgaagaccag
cctacagctatgttgAGATTAgaagacgtatgtcgatattagacgatcct
acggtaatcattagaacaataaaagatggaaatttttaatccaaaaagaa
atatttacagaataacaaaagccttttagaaatttgttcttaaagacata
gcatattttgttttcatgccATGAGTTTTTTAAACTCCacaaagacggag
tacacacatcaaactttcaaaacacgcaaactaaaagcagtaattatgac
gtcacacattatcaatgttttgatttgatcacccaggagaataatttacc
gtcagccaaataaggattattttttacctttgcaggtgatttttcagttt
gagtttatgtctaatgttatggtcttttgaagtgcttgttctaagaggtg
agtgaatataattgtttttagttttcaagagaagcaaatttaatctttct
tctacaagatgtcgctttaatataatgccaattatgcatgtaagttttat
tttaatactttcttttttcatatgttttgcatactttctaagggaatttc
NCAAGAGAAGCAAATGTGATAGAGTGCATCTGTCAACCCCCAAATTAAAT
ACAGTACACCCAAAAATCCGTACACCCAAGGTAAAAAGTAATGCAATCAT
AGTATGCAATATTAACCATAACAAAAGACTAAAAACTGGTACTACGTAAA
CAGGGAGAAAGAAGAGTCAATAAAATATGAGACATGATTCCCTCTTCATA
AATGTCATGAATTTCTTCTGTGTCAGTGCTCAGCGCAGCTAAGAGGCCAA
CTATCTAACAGATGATTATTCTCAATACCTAAGTATATGTTTAGTAGAAT
CACAATGGgcaacacccctccaacccccacctgaaaaaggtcacCTCCAC
CTGAAATCTGTTATCAGCCCAACCCCCACCTTATTCAACAATCCATACCT
AAATTGTGGTCATAAGTCCCTAATACTTCAAACTGGAGAGAAAGAGActa
gagaaaaacaaaactttcaaaatggattacgttttttcaaaatttatttc
ataatCATAGTAAAAGCTTTTCGGCTACGCCATCagtacaaaaatgtttt
tttattattctcTAGTTTGtgcaaaaatgattgaaaatgaCAGAATAAAT
TCAGAAACTTTGACAACGAACCTTCGCCTGAAAAATTTAACACCTGCCTA
CATAGGGGTTATCTCCACCTGAAATTTCTCATTAACCCAAATCCCACCTT
TTTTAACAAATCTGAAAATCCTTTTGCCATAGCCAGGTCATTGAGGCTAA
CCCCCTCATGAAAATGACTTCATATGAATAACTCCTTTAAAAAGATGCTA
GAACCTAAAGGTTTGCTCCCTACTACTATAACAGAAATAGAATTTCACTA
ATTATGTGCGAATGGTTTTAGATTCAAAAGTATGTGCCACTTTTATCTGA
GTCAATTTAGCAGAAAGAAGAGTGATAGACACTTTTGTGTCCAATGGTGT
TTTTTCTATgaaattataaataaaaacaaatttttgtatatTCCTCATTA
TTCTTTTCAAGCCAAGTGTAAAATAAAATGGCACCATCAAAAGATAAGGA
ATCTACCCGACCACGTAGAAACAATCCATTTGCTGAAGATGAACGAGATG
AGGTTGATGATTCCACCCAGACAGATGGTGATCCGACCGTTCAAGTGAAT
GTGCTGGTAAATGAGGAGAAGATTGCTGGAACACGAATTGTCGAGACCAT
TTTAAATACTGGATTACCAGCTAACCAGCGCAGACATTATTATGGACCAC
TCTCCGAACAAGAAAGGTAGCCCTTTAAAACTTACCATTTGTAAAATATA
GAAGACaaggttttaaatgtttttaacgTTAGAAACTTTTAGCAACATGC
ATCTATCTGTTAAAGTTAATaaagtgaaatttttatttttttcagggtTG
TATCCGACAGACTTCTAGTTATTGCTGATGCTTTCAACGAACAAATTGAA
GATGCTCTTGGCTCGCTGAGGGATATTGTACCAGCTAATCCTGAAAGTAA
ATTTAATCTTTTCAAAAGACTTGCACAACGCGTTATCTCAAATGGTATCA
ACTGGGGTCGCATTGCTACCATCTTGATTCTTGGAGCACGAATGTTGACT
TCAAGTGGATACGAAATCGCAGACCTTGTTTTCACATTTTTACTAGAGTT
CATAACAGAAAAGCTCTTTGCCTGGATCTTAGATAGTGGTGGTTGGGTAA
GTTGTTTTTTCTCACTCCAAGAATGCTATCGAATTTTAAGAAGGAACTTA
AAAAGAACTTAATTTTGAGAGCTATTTTTGGGTAAAGAAAATCAAGCTTA
AAGCAGGAACTAGTAGGAATTGATCTTCGAGCTATtttcttgtgattttt
gaaaatttttgcaaaattatgagaaaaaGCCGCAAAGACGTGAAAGCATT
TGATAGCAAATTTTCACTATACACTTTTTATAGAGGTCCGCTATCGATTA
TGCTGAGAAGATTTGTCAACATCCAGCAATCCCTGCTGTTGTGAATCCAA
CAAATATTGCTACTGTTTGCGCTATTGCTGCTGTTGTGGGCTTTATCTAC
TACAAGTACACCTCCAAGTAGTGTCTGGTATCTTGTGATCCAAGAATGTT
CAAGCTTGATGTCCCTTGATGCTCATATGGTAATGGTTGCAAGGTTAACC
GAAATGCCCAAAGAGCGTTTTTCTCGATATTGGAAGATGATGTTAAAGAG
AAACATGTTTTTGAATCCGATTCTTTTTGGCTCCTGATTTTGGAGAACAG
TTGGCTTTACAGAGCAAAATTTGGTTCAAAAGGTTATTATCCTATTATGA
TTGTTGGAAATGAACcgttgaattttttgaaattatttaccGTGAAGTGT
ATTTACAATGGAATTGACACCATGCTTGGCACCGCACGAACAAATCTTTG
ATAACAGAACATGATTTTTATCGCATCTCATCTTATTGCAAAGGAGGTAA
ATCACACTTACATACGATAAAACAGAAATTTTATGAATCAGATTggttat
tttttatgttttttattgaaatgtttttattattgttttaaaTTATCAAC
TCATCTAGTTAGGACATAATTCACTTAAAGTCTGTCTCTAAAGGTATGtc
tacattttattttttggacattttctcaGCACATGTCAGAAagtttgaaa
gatattttcaaggaGAATAATAggataaaagatttttaaaaaatttgaaa
aatgaagaagaaaaatcaaaatctaaaaaatgaagatttcttcGACTTTT
TAAAACTCATGAAATTCTTGAGAATGTTTGAAGcttgctgatttcaaatc
tgtATGTCACGATTTTTAAAAcagtagaaaaaatcttcatatttttttca
ttttcattttcatttttcttctttatttttcaatttttcaaatatcttcT
ACCCTATAGATTATTTTCCTTAAAGAAAATAACTTTCCAACATAGCATGA
ATAGGGGctgagaaaatattcaaaaaccaAAGTGTCCACTgtcttttgag
acagactttagaatCATAGCTTTCCAAAAGAGACCCTTTTTGCCCTATCG
ATGTAAGTAATTCATTTAGCAGGTTATTTCTAAGAAAAGTACGAAAATAT
TCGAAATCAGACCCAAACAGACTGGTTTTCGATGAGCTAATAACGCAATC
TTTGCTTTTTTATGTCACCGGTTCTTTTAGCAGGAATGATATTTTGATGT
ACCAGTAGGTCctttttgtaattattacaGTTCTTATTTTAACTTTATTA
GCGAATTTATAGAAATAGAGTATTTATGTAATTCGTTTTTTATATCATCC
AGATGTCATTACTCATAGTTTTTTATGTTacaaaaaaagagaatttcttG
CTGATTCGATTGTAAGGAATTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067335TCONS_00067335Clytia hemisphaericatranscript
TCONS_00067336TCONS_00067336Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067335-proteinTCONS_00067335-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:155766..162238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (1.35 tpm) - - (15.24 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.82	5.97	1.83	1.35	15.24	11.13	12.41	14.57	7.64	10.38	6.68	4.83	8.73	8.33	7.73	9.37	7.92	7.18	6.2	5.62	4.47	4.22	14.58	13.74	5.63	9.08	6.53	6.18	11.1	10.35