|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067332 ID=TCONS_00067332|Name=TCONS_00067332|organism=Clytia hemisphaerica|type=transcript|length=1864bp
gaacattttaaggcttgattcttaaaaagttaagaacatccaaaggctcc
ataaagtttggatgttcttttaagaaaaaacttgtaaagtgaaaaaataa
tttttgcttaTGGAAATGAACTTCAATTATCAATCGGCTCATCCACAAGA
TAATTTGGCATTTCATGTATTGCGGTATACTTTTTTACTAATTAGCCACT
AAACATAAGTAAACACATTTTGTTTGACTTTTTGGATCAGTTATACTGAA
TGTGAAGGGAAAGCATTCTCAAATGATATTACAAGGTCAAATATTTCATC
AAACAGTCGGAAGATGTTTAATGTTTACATTGGTGTTTGGTTGAGCTtct
attaattattttttcgttatttAATTTCATTAGATATCAGGAGAGACTTG
GATTCTACCTTTTTGggCACTCTGATGAGAGAAAGACAGGAATGTTACGA
GGCATTCACCAAATCACCATCGCTGTTTTCATTGTCGGTGTTACTATAGT
AACCATCTCTTGGCTCAATACAAAAGATGAAACAGCTCGTATTTTTCGCC
CTATCGGTTTAAACGATTTCGAATCAAAACTTGCTTATGAATATCTCACG
AAAGGTGTTCGCCCTGACCAACAGATGAATGCTAATAAAAAACCACGGGA
AGCCGATCGGGCCGGATGGCCACGTTACCATGGATACGGCGACACGCGAA
GCTGCAAAAACGACTGGACGCATAAAGGCCTGATTGATTTATTTGACTTG
TGGGTTAAGATGGCTGACTTACTCGACGTGAATTATACGTTGACGCACGG
GACGATGATCGGTGCTTTACGTGACGGTGACTTGGTACCGTACGACCAGG
ACGTCGACGTCATGATGAATATTGACGAAGTTCCGAAATTCGCGCAGATG
ATTGACGAACATTTCAGTGATAAAGACGAGAAAGTCCATTTGACCATTCA
TAAGGAGTATCGTAAACCGGTGAAAGAGAGAGGGATGTGGTCTTGCAATG
GTGATCGGATTTATAAAACGCAGTGGTACAGAGACCAGTGTTCCACGCAA
GAACCTCTCGGTAGACTGTTACGCGGTCCTGTACTTCATATTGATTTAGT
CGGCTACCGTATAATTAACGACACGACGTTTCATATACAAAGCGAGGATA
GAATAACTGATTATAAAACGGAAGATATGTTGCCGTTTACTGATTGTCAC
TTTTTGGGGTATAAGACTTATTGTTTGAATAATCCTGCAGCTTTGTTATC
CAAAGTTtataatgataattttatgacTCCAATTAAAAAGTGTGTGAATG
GTAGCTGGGTCAAATGAATGGAACTATTGATCAAGATGGCGGGCTAAAAA
CGTCGGAATAGTTGGCCTTGTACTCTAAGGGCCGAGTTACTCTCGTATGG
AAATCAACTCATTATAGTATTGTCTTTATTCTGATAGGATAGACAGCTGT
GGTTGTGTTGTAATCCTATGTTCGTAAAAAGATAACGAAAATTGTTTGGC
ATTTTAAGCTACTATCATATTATATGCATTTTGGATTTaagaaaaatgta
caaaaagaagaCAGCACTGTAATGACCGTAATATTTGTAAATTTGGACTT
CCTCAAGACATAGAGACTAACTATCATGTATccattatttttggacctac
cccggtggggtggaggtcctatgaattaacctgtgttagtccgttcgtcc
gttcgttcgtccgttcgttcgtctgttaccaacttttctcaggattgaat
cctaaaaatcttttgatttttggtacaaaggtgcaaaatggtagtggcca
aaatgtgacggagcccgattttcgaaaaaaaaaaatttggggcaaatttg
ggccaaaaaacggc Run BLAST on NCBI transcript from alignment at scaffold_469:126553..129297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067332 ID=TCONS_00067332|Name=TCONS_00067332|organism=Clytia hemisphaerica|type=transcript|length=2745bp|location=Sequence derived from alignment at scaffold_469:126553..129297+ (Clytia hemisphaerica)
gaacattttaaggcttgattcttaaaaagttaagaacatccaaaggctcc
ataaagtttggatgttcttttaagaaaaaacttgtaaagtgaaaaaataa
tttttgcttaTGGAAATGAACTTCAATTATCAATCGGCTCATCCACAAGA
TAATTTGGCATTTCATGTATTGCGGTATACTTTTTTACTAATTAGCCACT
AAACATAAGTAAACACATTTTGTTTGACTTTTTGGATCAGTTATACTGAA
TGTGAAGGGAAAGCATTCTCAAATGATATTACAAGGTCAAATATTTCATC
AAACAGTCGGAAGATGTTTAATGTTTACATTGGTGTTTGGTTGAGCTtct
attaattattttttcgttatttAATTTCATTAGATATCAGGAGAGACTTG
GATTCTACCTTTTTGGTAAGATAAGTATATTTTGCtctttgattaaaaaa
taaattcctTCATACCTTTCCCTCTGTATAAACCACCATTAATGTTATCA
GCTTTCTCAACCACAGCCGATGCGAGACAACTGATATACACCTACGTTCT
TCTTTGATAATAAGAACCAGCGAAATTTTTGTTGAAGTTCACTTAttctt
atacacgtttttttttataagaacgtcaaaaattttcgaagcctacggat
gttcttagttttttggatttgaagcctaaaaatgttcttaaaatgttctt
attttcagcatttttttagcattttgatgtaatttcttaagaaaatgcat
gtttttaagtctccaaagccttaaaatgttcttaaacttttgggcctcga
agccttatgttcttatatagtttgctcttataataAAACGTGTATTTCAG
TACTTTGAGCAGTGATTCTCAACTTTTCCTTTCGGGCATTTTCGCGCTTC
TAATGATGTGcatatttttttacaagcataacacttataagcatatgaag
gctctgatttgcagatttcctaagcataaaATAATCAGCCAGCCagcatg
aattttttttatttggtcaATTGTTTTTCTGTTCAAAAAGGTTTGGAAGT
GGTCATGTAAAAAAAGGCATTGGTTTGGGTGAATCAAAAGCATAATAATC
ATAAACATATAACAAGCATatgctatgcctggatgctttgaaagcttgag
catactcgagcctgaccaagggacagacacttgcttataaaaaaaacatg
tactctcTCACCCCTAACTACTTTTaatatttctgatttttaaatCCGAG
ATTCCACCTGAGAGTTTTTCTTCAATtggatttatttttgttttagggCA
CTCTGATGAGAGAAAGACAGGAATGTTACGAGGCATTCACCAAATCACCA
TCGCTGTTTTCATTGTCGGTGTTACTATAGTAACCATCTCTTGGCTCAAT
ACAAAAGATGAAACAGCTCGTATTTTTCGCCCTATCGGTTTAAACGATTT
CGAATCAAAACTTGCTTATGAATATCTCACGAAAGGTGTTCGCCCTGACC
AACAGATGAATGCTAATAAAAAACCACGGGAAGCCGATCGGGCCGGATGG
CCACGTTACCATGGATACGGCGACACGCGAAGCTGCAAAAACGACTGGAC
GCATAAAGGCCTGATTGATTTATTTGACTTGTGGGTTAAGATGGCTGACT
TACTCGACGTGAATTATACGTTGACGCACGGGACGATGATCGGTGCTTTA
CGTGACGGTGACTTGGTACCGTACGACCAGGACGTCGACGTCATGATGAA
TATTGACGAAGTTCCGAAATTCGCGCAGATGATTGACGAACATTTCAGTG
ATAAAGACGAGAAAGTCCATTTGACCATTCATAAGGAGTATCGTAAACCG
GTGAAAGAGAGAGGGATGTGGTCTTGCAATGGTGATCGGATTTATAAAAC
GCAGTGGTACAGAGACCAGTGTTCCACGCAAGAACCTCTCGGTAGACTGT
TACGCGGTCCTGTACTTCATATTGATTTAGTCGGCTACCGTATAATTAAC
GACACGACGTTTCATATACAAAGCGAGGATAGAATAACTGATTATAAAAC
GGAAGATATGTTGCCGTTTACTGATTGTCACTTTTTGGGGTATAAGACTT
ATTGTTTGAATAATCCTGCAGCTTTGTTATCCAAAGTTtataatgataat
tttatgacTCCAATTAAAAAGTGTGTGAATGGTAGCTGGGTCAAATGAAT
GGAACTATTGATCAAGATGGCGGGCTAAAAACGTCGGAATAGTTGGCCTT
GTACTCTAAGGGCCGAGTTACTCTCGTATGGAAATCAACTCATTATAGTA
TTGTCTTTATTCTGATAGGATAGACAGCTGTGGTTGTGTTGTAATCCTAT
GTTCGTAAAAAGATAACGAAAATTGTTTGGCATTTTAAGCTACTATCATA
TTATATGCATTTTGGATTTaagaaaaatgtacaaaaagaagaCAGCACTG
TAATGACCGTAATATTTGTAAATTTGGACTTCCTCAAGACATAGAGACTA
ACTATCATGTATccattatttttggacctaccccggtggggtggaggtcc
tatgaattaacctgtgttagtccgttcgtccgttcgttcgtccgttcgtt
cgtctgttaccaacttttctcaggattgaatcctaaaaatcttttgattt
ttggtacaaaggtgcaaaatggtagtggccaaaatgtgacggagcccgat
tttcgaaaaaaaaaaatttggggcaaatttgggccaaaaaacggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067332-exon-scaffold_469-1491911889:126553..126967 | TCONS_00067332-exon-scaffold_469-1491911889:126553..126967 | Clytia hemisphaerica | exon |
| TCONS_00067332-exon-scaffold_469-1510915933:126553..126967 | TCONS_00067332-exon-scaffold_469-1510915933:126553..126967 | Clytia hemisphaerica | exon |
| TCONS_00067332-exon-scaffold_469-1575043694:126553..126967 | TCONS_00067332-exon-scaffold_469-1575043694:126553..126967 | Clytia hemisphaerica | exon |
| TCONS_00067332-exon-scaffold_469-1491911889:127849..129297 | TCONS_00067332-exon-scaffold_469-1491911889:127849..129297 | Clytia hemisphaerica | exon |
| TCONS_00067332-exon-scaffold_469-1510915933:127849..129297 | TCONS_00067332-exon-scaffold_469-1510915933:127849..129297 | Clytia hemisphaerica | exon |
| TCONS_00067332-exon-scaffold_469-1575043694:127849..129297 | TCONS_00067332-exon-scaffold_469-1575043694:127849..129297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:126553..129297 + |
Blast
The following BLAST results are available for this feature:
|
