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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067324 ID=TCONS_00067324|Name=TCONS_00067324|organism=Clytia hemisphaerica|type=transcript|length=1450bpRun BLAST on NCBI transcript from alignment at scaffold_469:62662..81770+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067324 ID=TCONS_00067324|Name=TCONS_00067324|organism=Clytia hemisphaerica|type=transcript|length=19109bp|location=Sequence derived from alignment at scaffold_469:62662..81770+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067324 vs. Swiss-Prot (Human)
Match: CBPC2 (Cytosolic carboxypeptidase 2 OS=Homo sapiens GN=AGBL2 PE=1 SV=2) HSP 1 Score: 490.345 bits (1261), Expect = 1.034e-163 Identity = 233/413 (56.42%), Postives = 302/413 (73.12%), Query Frame = 2
Query: 86 GKVVYDNSPDP-EIRYFVNSKTDPRTTSSPAPYYTLKDESDNTLQFESRFESGNLMRAIKTGEYEYQLWLKFDLYTKKHTQWFYFQVKNAHPNKIYKFTIMNFLKSGSLYNEGMKPLLYSERDAQEKKIGWIRAGTHIKYYKNDIKIEENKERTYYSLHWRCSFANDNDTYYLAHSYPYTYSDLQEYLMFLSNDPQRKKCCKQRVLCQTLAGNQIYLLTITTPTRCPKQAKIKRTIVITARIHPGETIGSWMMKGLLDYLTSNEADAKILRETFIFKIIPMLNPDGVIVGNYRCSLAGRDLNRNYKTVLKDSFPPVWSTKYLVKKLQEEREVVLYCDLHGHSRKKNIFVYGCENKQEKLSTRLNTRLFPYILAKNAPDKFSFTNCRFRVQKNKEGTGRVVMWNTGIRYSYTLE 1321
G VVY P E YF +S+ + TL+ DNTL FESRFESGNL +A++ YEY+L L+ DLYT KHTQWFYF+V+N + Y+FTI+N LK SLY GMKPLLYS+ DA + IGW R G IKYYKN+ ++ ++ +Y L W F D DT + AH YPYTY+DLQ YL+ ++N+P + + CK + LC++LAGN +YLLTIT P++ P++A K+ +V++AR+HPGE+ GSW+MKG LD++ SN DA++LR+ F+FK++PMLNPDGVIVGNYRCSLAGRDLNR+YKT+LK+SFP +W T+ ++K+L EEREV+LYCD HGHSRK NIF+YGC N K L+ R+FP +L KNAPDKFSF +C F+VQK KEGTGRVVMW GI SYT+E
Sbjct: 223 GTVVYQLDSVPIEGSYFTSSRVGGKRGIVKELAVTLQGPEDNTLLFESRFESGNLQKAVRVDTYEYELTLRTDLYTNKHTQWFYFRVQNTRKDATYRFTIVNLLKPKSLYTVGMKPLLYSQLDANTRNIGWRREGNEIKYYKNNT---DDGQQPFYCLTWTIQFPYDQDTCFFAHFYPYTYTDLQCYLLSVANNPIQSQFCKLQTLCRSLAGNTVYLLTITNPSQTPQEAAAKKAVVLSARVHPGESNGSWVMKGFLDFILSNSPDAQLLRDIFVFKVLPMLNPDGVIVGNYRCSLAGRDLNRHYKTILKESFPCIWYTRNMIKRLLEEREVLLYCDFHGHSRKNNIFLYGCNNNNRKY--WLHERVFPLMLCKNAPDKFSFHSCNFKVQKCKEGTGRVVMWRMGILNSYTME 630 The following BLAST results are available for this feature:
BLAST of TCONS_00067324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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