TCONS_00067312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067312
Unique NameTCONS_00067312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067312 ID=TCONS_00067312|Name=TCONS_00067312|organism=Clytia hemisphaerica|type=transcript|length=767bp
GATATCTTCAACTTGGTACACTAAGCCCACTGACACTGGCCTTATGATGA
ATTACCATGCTTTGTCACCCCTTAGGTATAAACGATCAGCGGTTACGAGT
ATGATACACAGAATTTTTCGATCTTGTAGTACACTAGAACTCCTTGAAGT
CTTGTAAAAGCTTGTAGAATCTTGAAAAATAATCAATACCCATCAAAGTT
CTATGAGCCAATTATTCGAAAAACGCTTGAAAAGTTACGTAATCCACCAC
AAGAAAACGCTAATGCCGAAGAAGAGGTTGAGAATAACATAATCGAAGAT
ACCAAAATCTTCATTGAATATCGGGGAAGAGAGTCCGACGTCTTTTATCG
CTCATTGAGAAATGCAGGTGCACCTGTAAAAGTAGTGCTTAGACTCCGTA
AAATCAAAACCATCTTGCCATcgaaaaatgttacaaaagcAGTGTAGTTT
ACCAAATTCTATGTCCATGTTGTAAAGCATGCTATGTCGGGCAAACAAAC
CGACACACTCTGCAGCGCATTAAAGAACATCAACAATCAAGCAGTCCAGT
CGGCCGACACCTACAAGTATGCAATACAACAATAACAATGGATGGCGTCA
CAATACTAGCTCAAAATAACAAATCTGAAGACTATCTAATGACATTGGAA
GCTTTGTTCATTAATGAATTGAAaccaactttaaataaaaaagatgaata
CAAAAGTAGGGCCTTGACAATCAAAGTTTAATTATCTTATTCCCTAGTGA
ATGCACTACGGAATTCT
Run BLAST on NCBI

transcript from alignment at scaffold_468:151323..152089

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067312 ID=TCONS_00067312|Name=TCONS_00067312|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_468:151323..152089 (Clytia hemisphaerica)
AGAATTCCGTAGTGCATTCACTAGGGAATAAGATAATTAAACTTTGATTG
TCAAGGCCCTACTTTTGtattcatcttttttatttaaagttggtTTCAAT
TCATTAATGAACAAAGCTTCCAATGTCATTAGATAGTCTTCAGATTTGTT
ATTTTGAGCTAGTATTGTGACGCCATCCATTGTTATTGTTGTATTGCATA
CTTGTAGGTGTCGGCCGACTGGACTGCTTGATTGTTGATGTTCTTTAATG
CGCTGCAGAGTGTGTCGGTTTGTTTGCCCGACATAGCATGCTTTACAACA
TGGACATAGAATTTGGTAAACTACACTgcttttgtaacatttttcgATGG
CAAGATGGTTTTGATTTTACGGAGTCTAAGCACTACTTTTACAGGTGCAC
CTGCATTTCTCAATGAGCGATAAAAGACGTCGGACTCTCTTCCCCGATAT
TCAATGAAGATTTTGGTATCTTCGATTATGTTATTCTCAACCTCTTCTTC
GGCATTAGCGTTTTCTTGTGGTGGATTACGTAACTTTTCAAGCGTTTTTC
GAATAATTGGCTCATAGAACTTTGATGGGTATTGATTATTTTTCAAGATT
CTACAAGCTTTTACAAGACTTCAAGGAGTTCTAGTGTACTACAAGATCGA
AAAATTCTGTGTATCATACTCGTAACCGCTGATCGTTTATACCTAAGGGG
TGACAAAGCATGGTAATTCATCATAAGGCCAGTGTCAGTGGGCTTAGTGT
ACCAAGTTGAAGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042067XLOC_042067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067312-exon-scaffold_468-1491911889:151323..152089TCONS_00067312-exon-scaffold_468-1491911889:151323..152089Clytia hemisphaericaexon
TCONS_00067312-exon-scaffold_468-1510915933:151323..152089TCONS_00067312-exon-scaffold_468-1510915933:151323..152089Clytia hemisphaericaexon
TCONS_00067312-exon-scaffold_468-1575043694:151323..152089TCONS_00067312-exon-scaffold_468-1575043694:151323..152089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:151323..152089 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.386272	0.0620007	0.315391	0.215815	0.412336	0.242915	0.495781	0.32306	0.415316	0.265459	0.617801	0.390143	0.169141	0.175654	0	0.116232	0	0.146763	0.135174	0	0.0614729	0	0	0.0662765	0.4959	1.30699	0	0	0.070569	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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