TCONS_00067302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067302
Unique NameTCONS_00067302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067302 ID=TCONS_00067302|Name=TCONS_00067302|organism=Clytia hemisphaerica|type=transcript|length=501bp
CTAGAATAAAATAAACATCCAAATCCAATTTGGTTGTTAGTTAGGTAAAG
ATGAAATATAGGAAGAAATAGGCTGCTGGGCGTGCAAGTGCTGGGACAGG
GGCATATGTAAATAGAGGTACATTGCATCAGACTTCCAATCACCCATGAC
TGCAATGGAGTCAAGAGGTACCCCGGCCTCCAAAGCAAAGGTGGCCCCAC
CACGTCTAAACGAGTGTGACCCATATTGACGGAGTGAGAGCCCAGAACGA
GAGAGGTGAGCCTGAAGGATGCACATAAAATCCCGGTACACAAAAACCCG
ATTCGAGGCAAGGTGGGAATCCCTCCATCAAAAGGCTTGATCGCAAGGAA
GGGCCCCCGGGGTGAGGGAAAAGGCATGGGACACAGCCAAAACCGGACAG
AGGTGAGAAGAGGGCATGGCAACCAGTGGTATAGTAACAGTACGTTGACC
AAACTGGATGGTTTTGCTCCACCTCACTCTGATATGCACCCCGGAACCAA
C
Run BLAST on NCBI

transcript from alignment at scaffold_468:50180..50680

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067302 ID=TCONS_00067302|Name=TCONS_00067302|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at scaffold_468:50180..50680 (Clytia hemisphaerica)
GTTGGTTCCGGGGTGCATATCAGAGTGAGGTGGAGCAAAACCATCCAGTT
TGGTCAACGTACTGTTACTATACCACTGGTTGCCATGCCCTCTTCTCACC
TCTGTCCGGTTTTGGCTGTGTCCCATGCCTTTTCCCTCACCCCGGGGGCC
CTTCCTTGCGATCAAGCCTTTTGATGGAGGGATTCCCACCTTGCCTCGAA
TCGGGTTTTTGTGTACCGGGATTTTATGTGCATCCTTCAGGCTCACCTCT
CTCGTTCTGGGCTCTCACTCCGTCAATATGGGTCACACTCGTTTAGACGT
GGTGGGGCCACCTTTGCTTTGGAGGCCGGGGTACCTCTTGACTCCATTGC
AGTCATGGGTGATTGGAAGTCTGATGCAATGTACCTCTATTTACATATGC
CCCTGTCCCAGCACTTGCACGCCCAGCAGCCTATTTCTTCCTATATTTCA
TCTTTACCTAACTAACAACCAAATTGGATTTGGATGTTTATTTTATTCTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042057XLOC_042057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067302-exon-scaffold_468-1491911889:50180..50680TCONS_00067302-exon-scaffold_468-1491911889:50180..50680Clytia hemisphaericaexon
TCONS_00067302-exon-scaffold_468-1510915933:50180..50680TCONS_00067302-exon-scaffold_468-1510915933:50180..50680Clytia hemisphaericaexon
TCONS_00067302-exon-scaffold_468-1575043694:50180..50680TCONS_00067302-exon-scaffold_468-1575043694:50180..50680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:50180..50680 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312833	0.679538	0.347662	0	0	0.16959	0	0.255233	0	0.236531	1.2471	0.510347	0.322902	0	0.842859	0.199349	0.318421	0	0.196677	0.15172	0.949256	0.848682	0.310216	0.139392	0.544763	0.358082	0	0	0	0.212318
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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