TCONS_00067294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067294
Unique NameTCONS_00067294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067294 ID=TCONS_00067294|Name=TCONS_00067294|organism=Clytia hemisphaerica|type=transcript|length=450bp
ATGTCTTTGTAAAGTTCAACGTCAGTTTCtaactttaaaatcttcttGGT
CAATTCAATTTTCTTATCATTTCTTCTGTCTATTCTCTGATTgagtattt
tcattttgttataaAATCCTTTACGGACTTCTTGTTTAGTGACATTGAGC
AGTTTATTTTTGGTTTTGTAAAGAGTTAATTGGTGtttaagtttcttgtt
ttcatggGTTAAGGCATTTATTTGTCTGTCCAAGAGCTTTGTATCTCCTA
ATAACtttgacttttttcttgaaGATGGCGGTTTAAAATTCAATGAAGCC
GTTTCTCCGAGAAATGAACTAGAAaggctttcattttttctttgtctttc
aaaagaaatgtcCTTTTGGATCAATGGAGAGGAAAGTATGTCGTCACTTG
AGTTTTGAGATAAGTTTTCGACACTACAGTCTATCAAACTGCTATCCAAA
Run BLAST on NCBI

protein sequence of TCONS_00067294-protein

>TCONS_00067294-protein ID=TCONS_00067294-protein|Name=TCONS_00067294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
LDSSLIDCSVENLSQNSSDDILSSPLIQKDISFERQRKNESLSSSFLGET
ASLNFKPPSSRKKSKLLGDTKLLDRQINALTHENKKLKHQLTLYKTKNKL
LNVTKQEVRKGFYNKMKILNQRIDRRNDKKIELTKKILKLETDVELYKD
Run BLAST on NCBI

transcript from alignment at scaffold_468:31234..31683

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067294 ID=TCONS_00067294|Name=TCONS_00067294|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at scaffold_468:31234..31683 (Clytia hemisphaerica)
TTTGGATAGCAGTTTGATAGACTGTAGTGTCGAAAACTTATCTCAAAACT
CAAGTGACGACATACTTTCCTCTCCATTGATCCAAAAGgacatttctttt
gaaagacaaagaaaaaatgaaagcctTTCTAGTTCATTTCTCGGAGAAAC
GGCTTCATTGAATTTTAAACCGCCATCttcaagaaaaaagtcaaaGTTAT
TAGGAGATACAAAGCTCTTGGACAGACAAATAAATGCCTTAACccatgaa
aacaagaaacttaaaCACCAATTAACTCTTTACAAAACCAAAAATAAACT
GCTCAATGTCACTAAACAAGAAGTCCGTAAAGGATTttataacaaaatga
aaatactcAATCAGAGAATAGACAGAAGAAATGATAAGAAAATTGAATTG
ACCaagaagattttaaagttaGAAACTGACGTTGAACTTTACAAAGACAT

Coding sequence (CDS) from alignment at scaffold_468:31234..31683

>TCONS_00067294 ID=TCONS_00067294|Name=TCONS_00067294|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_468:31234..31683 (Clytia hemisphaerica)
TTGGATAGCAGTTTGATAGACTGTAGTGTCGAAAACTTATCTCAAAACTC
AAGTGACGACATACTTTCCTCTCCATTGATCCAAAAGgacatttcttttg
aaagacaaagaaaaaatgaaagcctTTCTAGTTCATTTCTCGGAGAAACG
GCTTCATTGAATTTTAAACCGCCATCttcaagaaaaaagtcaaaGTTATT
AGGAGATACAAAGCTCTTGGACAGACAAATAAATGCCTTAACccatgaaa
acaagaaacttaaaCACCAATTAACTCTTTACAAAACCAAAAATAAACTG
CTCAATGTCACTAAACAAGAAGTCCGTAAAGGATTttataacaaaatgaa
aatactcAATCAGAGAATAGACAGAAGAAATGATAAGAAAATTGAATTGA
CCaagaagattttaaagttaGAAACTGACGTTGAACTTTACAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042049XLOC_042049Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067294-proteinTCONS_00067294-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067294-exon-scaffold_468-1491911889:31234..31683TCONS_00067294-exon-scaffold_468-1491911889:31234..31683Clytia hemisphaericaexon
TCONS_00067294-exon-scaffold_468-1510915933:31234..31683TCONS_00067294-exon-scaffold_468-1510915933:31234..31683Clytia hemisphaericaexon
TCONS_00067294-exon-scaffold_468-1575043694:31234..31683TCONS_00067294-exon-scaffold_468-1575043694:31234..31683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:31234..31683 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.156874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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