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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067293 ID=TCONS_00067293|Name=TCONS_00067293|organism=Clytia hemisphaerica|type=transcript|length=1927bp
ttttttaagAAAGGCGAGGCTATAACGAATATCATCATCTAttatttgga
gcttgaaatattgagagaaaaattttgccaaaatgtTTAAGTCTGTATAC
TTGCACAAATCGAAAAAGTGGCTATTCAATAATTTTAGCTCTGGATCTAT
TAGCTCTATATCACCATCAACTTGCCTAAAAAATTCAGCTTTTGATTCCT
TTTCTATCAAAATGTCATGCATACTTTTCTTACCATTGAGCTTAAGCCTA
TTGAGAGCCTTTTTTTATTAGAGAGCTTCCTGCACCCATTTTCTTGCAAA
TCTACATTAATTATGCAAcgcacaaacaaacaaactttttcatcAACATC
ATTTTCATTTACTGCATATTCTACAACCGCCCATTGCTGGACATGGTTGG
ACATGGGAAAGTATCTCACCGTGAGGCCTATTCACTTAGAGGTATTTTCC
CATGTCGAActaattaaattcaaattcacaTCATTACTTCTTGCTTAAGG
CAAGAGAACAAAATTGACTAATAGAAATAATTTTATGACCAACAACTTGA
TCCAACAAAGACTTGGCAGGGCGACCTCTTCTCGTGTATTGGTCATCATT
AAATGTTAATAATTTCAAAGAACGAGAAGAGGGCATACGGATGACGTGTG
CAGCATAGTGATGTTGCTGTGATTTAATAAAATAGCTAACATCAGAGGTT
CCACAGATCCTGTGAAGCTGCGCattgtttattgaaaatctgtAATCATT
TTGATTCTCATTCACAAATCTGAAACCACCACGTACCATTCGACGCAGAA
ATTTTCGATACGCCACGTCAAGTCGATCAAACTGTTCTTGATTAAGGTTC
CAATTCTGACAGGCATACACAAGACGACTTcgaacaaaacaattcaaaaa
caaaactctCGTTTTCagctttaaatgaaaattttgtaaaagatttgaCA
TTTGTGAAGATTTTGCAGATGCTAGCTGAATACGGTGAGTGATCTCCTTT
TTACCAGTATTAGGCTGATTCGAATTGAGATAAGCACCaagatatttaaa
atctgacaCGTTTGACAGTTGACTTTCACCGAGATCAATAATTGAGGATG
GGTAGGGTATTTCATCCGGATGGTTAAGTATCATCGTTTCGGTTTTTTGA
GAATTAATGGATAAACCAAATTTTGTAAAGACTTCATTAAGCAGAACAGT
AGCGCTCTGGAGACCAGTTTTTGATTGTAAAAATTAAACTAAGTCATCAG
CATAGCCACACCAAGGTAACAACGATGTTCCTGATGAACTCAAGCCTTTC
TCGCGCATTATCACCCTTTCATTTCTTGAGATTGAATGACTATTTATACA
ATACTTGTGGACAAAGAACTGGATTAATGGATCATTACGGCTTTTCTCGA
TCATCAGGCGCATGACAAAGTCTATGTACAGATTGAAGAGAAAAGGGCTT
TCTGGGCCACCCTGACGAACACCGGATGTGGTTGCGAAAACTTTTCCCTC
GTATAATAGAGATGTATGGTGAtacaatttttcaagaattttgagcAATA
TTGGAGATTGACTGTTGCGAAATCGTAAGCTTATTGAGTCAAATAACCAT
TTACGTGGGATGCATGTGTATGGCATAAGTTAATAATGCAATCAAAAAGT
TTATAAGTCACAGATTCAACAGTAAAATTAGGAccattttcaacaatttt
ctttttgtcaGATTCTAGAAATTGCTCAATCAGAACCAGAGCTTCTTCAG
AACTAAGACAATCATTTGCTGCCATTTGCTGTGAGTTGCAATAACACAGA
GGAAAATTATCATTATAGTCTACATCATTTTTATACctttcctttaaaaa
aagaaatttaaagaattatatgacttacttttttaaaagaaaagaacatt
aaATTGCATTATAATGAaagtaaaaac Run BLAST on NCBI protein sequence of TCONS_00067293-protein >TCONS_00067293-protein ID=TCONS_00067293-protein|Name=TCONS_00067293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MILNHPDEIPYPSSIIDLGESQLSNVSDFKYLGAYLNSNQPNTGKKEITH
RIQLASAKSSQMSNLLQNFHLKLKTRVLFLNCFVRSRLVYACQNWNLNQE
QFDRLDVAYRKFLRRMVRGGFRFVNENQNDYRFSINNAQLHRICGTSDVS
YFIKSQQHHYAAHVIRMPSSRSLKLLTFNDDQYTRRGRPAKSLLDQVVGH
KIISISQFCSLALSKK Run BLAST on NCBI transcript from alignment at scaffold_468:29140..31066 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067293 ID=TCONS_00067293|Name=TCONS_00067293|organism=Clytia hemisphaerica|type=transcript|length=1927bp|location=Sequence derived from alignment at scaffold_468:29140..31066 (Clytia hemisphaerica)
gtttttacttTCATTATAATGCAATttaatgttcttttcttttaaaaaag
taagtcatataattctttaaatttctttttttaaaggaaagGTATAAAAA
TGATGTAGACTATAATGATAATTTTCCTCTGTGTTATTGCAACTCACAGC
AAATGGCAGCAAATGATTGTCTTAGTTCTGAAGAAGCTCTGGTTCTGATT
GAGCAATTTCTAGAATCtgacaaaaagaaaattgttgaaaatggTCCTAA
TTTTACTGTTGAATCTGTGACTTATAAACTTTTTGATTGCATTATTAACT
TATGCCATACACATGCATCCCACGTAAATGGTTATTTGACTCAATAAGCT
TACGATTTCGCAACAGTCAATCTCCAATATTgctcaaaattcttgaaaaa
ttgtaTCACCATACATCTCTATTATACGAGGGAAAAGTTTTCGCAACCAC
ATCCGGTGTTCGTCAGGGTGGCCCAGAAAGCCCTTTTCTCTTCAATCTGT
ACATAGACTTTGTCATGCGCCTGATGATCGAGAAAAGCCGTAATGATCCA
TTAATCCAGTTCTTTGTCCACAAGTATTGTATAAATAGTCATTCAATCTC
AAGAAATGAAAGGGTGATAATGCGCGAGAAAGGCTTGAGTTCATCAGGAA
CATCGTTGTTACCTTGGTGTGGCTATGCTGATGACTTAGTTTAATTTTTA
CAATCAAAAACTGGTCTCCAGAGCGCTACTGTTCTGCTTAATGAAGTCTT
TACAAAATTTGGTTTATCCATTAATTCTCAAAAAACCGAAACGATGATAC
TTAACCATCCGGATGAAATACCCTACCCATCCTCAATTATTGATCTCGGT
GAAAGTCAACTGTCAAACGtgtcagattttaaatatcttGGTGCTTATCT
CAATTCGAATCAGCCTAATACTGGTAAAAAGGAGATCACTCACCGTATTC
AGCTAGCATCTGCAAAATCTTCACAAATGtcaaatcttttacaaaatttt
catttaaagctGAAAACGagagttttgtttttgaattgttttgttcgAAG
TCGTCTTGTGTATGCCTGTCAGAATTGGAACCTTAATCAAGAACAGTTTG
ATCGACTTGACGTGGCGTATCGAAAATTTCTGCGTCGAATGGTACGTGGT
GGTTTCAGATTTGTGAATGAGAATCAAAATGATTacagattttcaataaa
caatGCGCAGCTTCACAGGATCTGTGGAACCTCTGATGTTAGCTATTTTA
TTAAATCACAGCAACATCACTATGCTGCACACGTCATCCGTATGCCCTCT
TCTCGTTCTTTGAAATTATTAACATTTAATGATGACCAATACACGAGAAG
AGGTCGCCCTGCCAAGTCTTTGTTGGATCAAGTTGTTGGTCATAAAATTA
TTTCTATTAGTCAATTTTGTTCTCTTGCCTTAAGCAAGAAGTAATGAtgt
gaatttgaatttaattagTTCGACATGGGAAAATACCTCTAAGTGAATAG
GCCTCACGGTGAGATACTTTCCCATGTCCAACCATGTCCAGCAATGGGCG
GTTGTAGAATATGCAGTAAATGAAAATGATGTTgatgaaaaagtttgttt
gtttgtgcgTTGCATAATTAATGTAGATTTGCAAGAAAATGGGTGCAGGA
AGCTCTCTAATAAAAAAAGGCTCTCAATAGGCTTAAGCTCAATGGTAAGA
AAAGTATGCATGACATTTTGATAGAAAAGGAATCAAAAGCTGAATTTTTT
AGGCAAGTTGATGGTGATATAGAGCTAATAGATCCAGAGCTAAAATTATT
GAATAGCCACTTTTTCGATTTGTGCAAGTATACAGACTTAAacattttgg
caaaatttttctctcaatatttcaagctccaaataaTAGATGATGATATT
CGTTATAGCCTCGCCTTTcttaaaaaa Coding sequence (CDS) from alignment at scaffold_468:29140..31066 >TCONS_00067293 ID=TCONS_00067293|Name=TCONS_00067293|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_468:29140..31066 (Clytia hemisphaerica)
ATGATACTTAACCATCCGGATGAAATACCCTACCCATCCTCAATTATTGA
TCTCGGTGAAAGTCAACTGTCAAACGtgtcagattttaaatatcttGGTG
CTTATCTCAATTCGAATCAGCCTAATACTGGTAAAAAGGAGATCACTCAC
CGTATTCAGCTAGCATCTGCAAAATCTTCACAAATGtcaaatcttttaca
aaattttcatttaaagctGAAAACGagagttttgtttttgaattgttttg
ttcgAAGTCGTCTTGTGTATGCCTGTCAGAATTGGAACCTTAATCAAGAA
CAGTTTGATCGACTTGACGTGGCGTATCGAAAATTTCTGCGTCGAATGGT
ACGTGGTGGTTTCAGATTTGTGAATGAGAATCAAAATGATTacagatttt
caataaacaatGCGCAGCTTCACAGGATCTGTGGAACCTCTGATGTTAGC
TATTTTATTAAATCACAGCAACATCACTATGCTGCACACGTCATCCGTAT
GCCCTCTTCTCGTTCTTTGAAATTATTAACATTTAATGATGACCAATACA
CGAGAAGAGGTCGCCCTGCCAAGTCTTTGTTGGATCAAGTTGTTGGTCAT
AAAATTATTTCTATTAGTCAATTTTGTTCTCTTGCCTTAAGCAAGAAGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067293-exon-scaffold_468-1491911889:29140..31066 | TCONS_00067293-exon-scaffold_468-1491911889:29140..31066 | Clytia hemisphaerica | exon |
| TCONS_00067293-exon-scaffold_468-1510915933:29140..31066 | TCONS_00067293-exon-scaffold_468-1510915933:29140..31066 | Clytia hemisphaerica | exon |
| TCONS_00067293-exon-scaffold_468-1575043694:29140..31066 | TCONS_00067293-exon-scaffold_468-1575043694:29140..31066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_468 | supercontig | scaffold_468:29140..31066 . |
Blast
The following BLAST results are available for this feature:
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