TCONS_00067286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067286
Unique NameTCONS_00067286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067286 ID=TCONS_00067286|Name=TCONS_00067286|organism=Clytia hemisphaerica|type=transcript|length=888bp
TTGGTAGAGCTTTTGAGAGGACAAACAAAATCCAACTTTGACATTCAGAA
AAGTAAATATGAGCAAGAATGTCTGCTTCAAAACATACAGTAAGCTGGAC
TTGATCCTGAAAGATACATTGGTATGCTTCCTAAAGTTGATGCCATCGAA
GATTTGTTCAAAGCTTGGTTTAGGATGAACAAAAGCATGTACACAAACTC
TATGAAGTCATTGCCTGCCCGTATTTTGACAATTGATCATACATTCAAGg
TGACGTCCAATGTTGGAATGTTCAGACAAGGTGACAATAAGGAATGGGTA
AAGCTTTACAATTCTCTCTTTGTTGCACttaataaaagaaaacaaatcgT
CACTTGGCATTTTACTCAAGGGGAAAAGTTCAGTTTGGTAAGAGATATCC
TTGACAAACTCAAGGAGCgagaaaactttaaaattgaaatggttCTGTTG
GACAATTGCTGCAAATACGATCTTGTCATCAACGACATATTTGGAAACCA
AATCTTCATTAAACTGGACCCGTTTCATGGGATTCAAAGGATCACATCTA
CCATTAGGAAGAAGCATCCTTTCCACCAACAACTATGTAGTGATCTGCAC
AATCTTTTACGCCATCCAACAGACCTATCCTCGAAACGAAGAACTGTGGA
AACTGCCTCTAAAGAAATCATTCTGGAACTTCTCGATAGAATAGTTGCGA
AATGGGAATCGTTGGAGTTTATGTTGGACGAAAGGTCATTGATAACGATG
GAAACAAGAGAAGCCTTTCTCAACTTAAGGAAGCATATTTCTAAAGGATG
TTTATCCAATATACCCGCTGGTTGTTCTACAAGTGTCAATGAGAATCTTC
ACAAGTGAGTTATGATTATTTAACTTGTTCAATGCAGG
Run BLAST on NCBI

protein sequence of TCONS_00067286-protein

>TCONS_00067286-protein ID=TCONS_00067286-protein|Name=TCONS_00067286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MLPKVDAIEDLFKAWFRMNKSMYTNSMKSLPARILTIDHTFKVTSNVGMF
RQGDNKEWVKLYNSLFVALNKRKQIVTWHFTQGEKFSLVRDILDKLKERE
NFKIEMVLLDNCCKYDLVINDIFGNQIFIKLDPFHGIQRITSTIRKKHPF
HQQLCSDLHNLLRHPTDLSSKRRTVETASKEIILELLDRIVAKWESLEFM
LDERSLITMETREAFLNLRKHISKGCLSNIPAGCSTSVNENLHK
Run BLAST on NCBI

transcript from alignment at scaffold_468:161370..166444-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067286 ID=TCONS_00067286|Name=TCONS_00067286|organism=Clytia hemisphaerica|type=transcript|length=5075bp|location=Sequence derived from alignment at scaffold_468:161370..166444- (Clytia hemisphaerica)
TTGGTAGAGCTTTTGAGAGGACAAACAAAATCCAACTTTGACATTCAGAA
AAGTAAATATGAGCAAGAATGTCTGCTTCAAAACATACAGTAAGCTGGAC
TTGATCCTGAAAGATACATTGGTATGCTTCCTAAAGTTGATGCCATCGAA
GATTTGTTCAAAGCTTGGTTTAGGATGAACAAAAGCATGTACACAAACTC
TATGAAGTCATTGCCTGCCCGTATTTTGACAATTGATCATACATTCAAGG
TTAGTTCTCAAACAGTTTTTCATGGCAATTATTGTTGAGTTTTAAAAGAG
GTGGGATTATATATAACTTATTTAAAAAAATCAGAAAGTGGTGTAGTAAA
TAAATTATACTGACTAGATCAAATTTGTTTACCTAAAGGGATGAAATTTT
TGCGAAATCTAATTTTGCGGTTGCAGTTAATTTGGGCCGTTAATTTCGCA
GTTAAAAAGATTTTTTGTTTAACATTTTATATGGCCTACTTTGCCCTAAA
AAGACTAATTTTATAGGTATGATTATTTAAATCATGAGAATAGTCGTGTT
TTCTGGAATTTAATTAGGCAGATTTGTCAAAAAACCTGGGAAATTGAATT
CCACAAAAATTTCTTCCACATGGCTGTTCACATTGTACGTACGCACTAAG
GGGGAGGGGTATCTTATCGAAAGCTTGCGTATAGGGGGAGGGTGGGTATT
GCACGCCAAGGCGGAAATAAATACTATCTTTCATTTTGCGACACTATCTC
TTCCCAAAAAAACATTATCTTAATTAAAACGATACTATCTTTATTACAGA
ATCTTTATTATGGAAACCGAGAAGTCCCATATCTAATTTTGGTAAAAAAA
TTAAATTAAAAAAAAATATCAATTTAGAGAAAAATTAAATTTTAGAAAAA
AATTAATTTTAGGAAATAAAATTTTGTTTCAGAGAAAAAAGAGAAAAATT
CACCGTCTGAAAAAAAATTCTAAAAGAGAAAAACTTGTTGGCCTGATTCC
TCCGTGCACACTTGCAACTTTTGTTTTCATGCTTCCTGGATTTGTGACCA
GATGATTTTTTGCACATAGTTGTCAATCCACAAACCCAGGCGTTACTAAT
CGATCGATTATCGATTAAATTCGATAGCTAATCGATACTCACAATTTTTT
AGCACTCAATTAAATTATCACCATAGATTTTTAATCGATAATATTGATTG
CAGTGTAAATAATTGATAATATCAATTAATATCGATATAATCGATACCTC
GACCTTATCGGTTCTTAATCGATAATATCGATGACACTTCTAATTGATAT
AATGGATATCTTATATCTGATCGATATAATCGATACTCACAACATTTTAG
GCGCTGATTATTTATCGATTATCGTTTTCATCGATATTTAATCAATTTAA
TTAATTATCGATTAGCTATCGATTTTAATCGATAATCGATTTTATTGATT
AGTAACGTCTGGACAAACAATGCAAGTTGACAGAACCAAACTTTGAAGAA
AAAAAATTATTTGGGCAAATGGGCCAAAAACGACCCAAAAAATGGGTTTT
TTCAGGATTTGCTCAATATTGAATAGGTAAAATGTTTTCTGATTTTTTAT
CATATCGTAGGTAACGGTTGAGTTAGATTTCAGTAACAAAAATAAATCTA
CATAACAAACCCTTTTTATAAGAATATTTTTGATTGCATTCAAAAATAGA
ACCCCAAAAAGTGAGGTTTTCAATCACAGCCACTTTCTAGCCCACAGCGT
TGATATTCTTGTGGCTGCTGTGTAGTACAAAATTCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGTCCTGCTTTAAGACTTCAATATTTTTTAACCGTTTTTCTT
GGAATTGGTAGTTTGAGGTCTGATAAAGATACTTATGGGTTTAATTTGTG
GCTGCAGGATTTTCAATGGGCTTAAAACAGCTTAAAATGTGGCTTCAATC
ACTAATTTATCAATTTACAAAATCCTAACCTGAGATCAGATTGTGAATGT
TTTCTGCACACCACGCTGAAGCTCTAAAGGGATGTGTGAAAACAAACAAT
CTGACGAATATGCAATCTCGAAATCGTAAGGACCGCGTTCGTCTAAAAGG
ACTGGGAATGATAACAAAGTTGCGCGATTGTGTTTATGAAAAGGGCGCCG
TATCAGTTTTTATTTTTCCGGCGCACAACAAGATTCTTGTTGTAGAATTT
TCAGCGGGAGGACTATTTTCCTCAGATGTATAATTTTCAAGCGCCTTTAG
AGGTTTACCGTGCGCTTAAGAAAATTATGAACATCTGTTATCAGGTTACA
AATTCCAGGTTGGGTTTTGTTTTCGAAATATGAATATTTGCAAAGCCTGA
TGCAAAACAAACACAATCTGACACAATACAGTGTTATTTTAAGAAAAAGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGAT
AAACCCTTTTGCTACGAGTTTCATCTGAAAAAAATGATTTTTACTCATTG
AACAAATTTGTGGCTGCTGTTTTATCAACATAGTGTTTTTCTTGATTTGC
GCCGCAGTTTTGGCCCATTTTACAAAAAAGTTTTTTTTTTCAACCTACTT
ATATCACCTTTAGAACCAATATTGTGAAGTTTCGTTTGAAAAGAGTTATT
TTTAAAAAGGATATTCAAATTTCTTTTTTTTTTTGCTGTTTTTGAAAACC
TCACGCAATTTTTGAATGCTATCTTTTTCTAAATTTAAATTTATTTTCCT
AAATTGAATATTTTTTTGTCGATGGCATTTCTCGGCTTCCATAAAAAAGA
TAGTATCCCCTAAAAAAGATAGTATCGTTTAAAAAAAGATGGTGTCGTTT
TAATAAAGATAATGTCGCGAAATGTGTCGGGAAATAAAAGATAGTGTCGC
AAAATGAAAGATAGTACTTATTTCCGCTTTGGCGTGCCATAGGTGGATTG
ACTGAAAATGTACCATATATATCATAGCTTTGTGTTTAATGTCGACATAC
CTTGTCTAATTCTGCCATAGCAACTATCTGGTCTGCAAAGTAGTTTAGTA
CGGTATAATTATGTAAAAATTGTGCACAAAGAAAGACGTGCAAGCATGAG
ACTTGGCACTATTGTAGTTTAGGGGTCAAAATTGGATTTAAATCTTATAC
CCCAAAAATTGACACATGTCTGTGTATTTTACAGACCAGAACAGGTTTCC
AGGCTAAAATGAATTTTTTTTTCTCCAAAGTATGTCATGTTCAGACCAAC
ATAGGTAGGGTGTAACTCCAGAACGACCCAAGAGGTTTATTTTTTTTATT
GTTGTACCTATCAGGTACGATTAATTAGATCAGATGCAAACTTGAGTCTG
CTAAATCACATGCCTCAAGTGCCCTGAATTTTTAACGTGCCCTATTTCTT
TACGTGCCTAGAATTTTTTATGTGCCCTAATTTTTTTATGTGCCCTAATA
TTTTCATGTGCCCTAATATTTTCACTGGCCTTACTTTTTTATGTGCCCTA
TTTTTTTCCACGTACCCAATTTTTTCATGTGCTCTAAATTTTTCACATTC
ACAAAATTAAAAATCACATGAAAGTTGGCACAAATCACTAAAAACTTAAA
GTATAAGCTGATTTTTTAAACAGCTTATTCAGAAGGTTTCATCTATAAAC
ATTTTAAAGACCAGATAGTTCCTATGACAGGAATAGACAAGGTGTGTCGG
CATTACACAAAGTTGCTGATGTCAGCATCTTTTCGTTTTTGCTTAGTAAT
ATATTTTCTGGGTGAAAAAAGTAATTACGACACAGCCATTCTAGTGATGT
ATGAAGTGATATAATTTGACAAGTAAAAACGGTGATTAAAAATTTGGGTG
AATTTGAAAAATTGGGACATGCCTTGAATCGCCTGAGTGCAAAATTAATC
GATTTTTTGACGAACTAGAAATGACGCTAGTTACTTGTTGCCAACTAGCC
AAGCATCTGTCTGCTCCTGACACGAGGCAGTATTTGAGAGGTAATCATTG
GTCTAGGCATTTATACAATTCTGCTTCTCTATTAGATATTAAATTGCTGT
ATAAACTAATTCAGAACAAATTTTTTGTTCTTTTAGGTGACGTCCAATGT
TGGAATGTTCAGACAAGGTGACAATAAGGAATGGGTAAAGCTTTACAATT
CTCTCTTTGTTGCACTTAATAAAAGAAAACAAATCGTCACTTGGCATTTT
ACTCAAGGGGAAAAGTTCAGTTTGGTAAGAGATATCCTTGACAAACTCAA
GGAGCGAGAAAACTTTAAAATTGAAATGGTTCTGTTGGACAATTGCTGCA
AATACGATCTTGTCATCAACGACATATTTGGAAACCAAATCTTCATTAAA
CTGGACCCGTTTCATGGGATTCAAAGGATCACATCTACCATTAGGAAGAA
GCATCCTTTCCACCAACAACTATGTAGTGATCTGCACAATCTTTTACGCC
ATCCAACAGACCTATCCTCGAAACGAAGAACTGTGGAAACTGCCTCTAAA
GAAATCATTCTGGAACTTCTCGATAGAATAGTTGCGAAATGGGAATCGTT
GGAGTTTATGTTGGACGAAAGGTCATTGATAACGATGGAAACAAGAGAAG
CCTTTCTCAACTTAAGGAAGCATATTTCTAAAGGATGTTTATCCAATATA
CCCGCTGGTTGTTCTACAAGTGTCAATGAGAATCTTCACAAGTGAGTTAT
GATTATTTAACTTGTTCAATGCAGG

Coding sequence (CDS) from alignment at scaffold_468:161370..166444-

>TCONS_00067286 ID=TCONS_00067286|Name=TCONS_00067286|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_468:161370..166444- (Clytia hemisphaerica)
GTGACGTCCAATGTTGGAATGTTCAGACAAGGTGACAATAAGGAATGGGT
AAAGCTTTACAATTCTCTCTTTGTTGCACTTAATAAAAGAAAACAAATCG
TCACTTGGCATTTTACTCAAGGGGAAAAGTTCAGTTTGGTAAGAGATATC
CTTGACAAACTCAAGGAGCGAGAAAACTTTAAAATTGAAATGGTTCTGTT
GGACAATTGCTGCAAATACGATCTTGTCATCAACGACATATTTGGAAACC
AAATCTTCATTAAACTGGACCCGTTTCATGGGATTCAAAGGATCACATCT
ACCATTAGGAAGAAGCATCCTTTCCACCAACAACTATGTAGTGATCTGCA
CAATCTTTTACGCCATCCAACAGACCTATCCTCGAAACGAAGAACTGTGG
AAACTGCCTCTAAAGAAATCATTCTGGAACTTCTCGATAGAATAGTTGCG
AAATGGGAATCGTTGGAGTTTATGTTGGACGAAAGGTCATTGATAACGAT
GGAAACAAGAGAAGCCTTTCTCAACTTAAGGAAGCATATTTCTAAAGGAT
GTTTATCCAATATACCCGCTGGTTGTTCTACAAGTGTCAATGAGAATCTT
CACAAGTGAATGCTTCCTAAAGTTGATGCCATCGAAGATTTGTTCAAAGC
TTGGTTTAGGATGAACAAAAGCATGTACACAAACTCTATGAAGTCATTGC
CTGCCCGTATTTTGACAATTGATCATACATTCAAGGTGACGTCCAATGTT
GGAATGTTCAGACAAGGTGACAATAAGGAATGGGTAAAGCTTTACAATTC
TCTCTTTGTTGCACTTAATAAAAGAAAACAAATCGTCACTTGGCATTTTA
CTCAAGGGGAAAAGTTCAGTTTGGTAAGAGATATCCTTGACAAACTCAAG
GAGCGAGAAAACTTTAAAATTGAAATGGTTCTGTTGGACAATTGCTGCAA
ATACGATCTTGTCATCAACGACATATTTGGAAACCAAATCTTCATTAAAC
TGGACCCGTTTCATGGGATTCAAAGGATCACATCTACCATTAGGAAGAAG
CATCCTTTCCACCAACAACTATGTAGTGATCTGCACAATCTTTTACGCCA
TCCAACAGACCTATCCTCGAAACGAAGAACTGTGGAAACTGCCTCTAAAG
AAATCATTCTGGAACTTCTCGATAGAATAGTTGCGAAATGGGAATCGTTG
GAGTTTATGTTGGACGAAAGGTCATTGATAACGATGGAAACAAGAGAAGC
CTTTCTCAACTTAAGGAAGCATATTTCTAAAGGATGTTTATCCAATATAC
CCGCTGGTTGTTCTACAAGTGTCAATGAGAATCTTCACAAGTGAATGCTT
CCTAAAGTTGATGCCATCGAAGATTTGTTCAAAGCTTGGTTTAGGATGAA
CAAAAGCATGTACACAAACTCTATGAAGTCATTGCCTGCCCGTATTTTGA
CAATTGATCATACATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042041XLOC_042041Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067286-proteinTCONS_00067286-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067286-exon-scaffold_468-1575043694:166196..166444TCONS_00067286-exon-scaffold_468-1575043694:166196..166444Clytia hemisphaericaexon
TCONS_00067286-exon-scaffold_468-1575043694:161370..162008TCONS_00067286-exon-scaffold_468-1575043694:161370..162008Clytia hemisphaericaexon
TCONS_00067286-exon-scaffold_468-1510915933:166196..166444TCONS_00067286-exon-scaffold_468-1510915933:166196..166444Clytia hemisphaericaexon
TCONS_00067286-exon-scaffold_468-1510915933:161370..162008TCONS_00067286-exon-scaffold_468-1510915933:161370..162008Clytia hemisphaericaexon
TCONS_00067286-exon-scaffold_468-1491911889:166196..166444TCONS_00067286-exon-scaffold_468-1491911889:166196..166444Clytia hemisphaericaexon
TCONS_00067286-exon-scaffold_468-1491911889:161370..162008TCONS_00067286-exon-scaffold_468-1491911889:161370..162008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:161370..166444 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.57475	0.968087	0.414121	0.173637	1.97294	1.72608	1.07481	1.32067	0.22015	1.25438	0.370554	0.556771	0.312748	0.288704	0.563716	0.92335	0.784477	0.241219	0.333257	0.755581	0.85881	0.517462	0.658997	0.871453	0.392689	0.350466	0.214935	0.229385	0.115987	0.118172
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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