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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067280 ID=TCONS_00067280|Name=TCONS_00067280|organism=Clytia hemisphaerica|type=transcript|length=1261bp
AACGAATAGCTGTCAATTATGTTACACCTTCTCTTATTCTTTCTCGCTAA
CTCATACAATACCACTCAATAAAAGGTCCATTGTGAATTATGAATTTGCT
ATTACTCGTCATCATGTATacagagaaaaaaagagaaaatgtcACTCTTT
ATAATAGGGTAATTTTTTTCTGCGACAACACTCAATAtcatttttttcgt
tttaggCTTTCCGATAGCCTCGATTTAGAAGAAGAAGATTTCGAAATGAT
TCAAAGATTTGTTGTTACTCTGTACGATCGCACAAATCCTTGTACGGATG
TTAATGAATGCCGGAGAATGTTGTTTACAAAGAAGCAGAGACCAGTTGAG
TCTTTGCCCCCAACACAGGATGCATTACGGTTGCACGTACATAGGACGAT
GAATGAATCCAGTAAATTTTGCAATGCAACAGAACGAACTATGCCTCTAC
GAAACGTGCTGGAATGGGGTTATAAGAAAAACGAAAGAGGAATGACCGTT
CCCAGATGGATGAATCAACCAGAAGCAAGCAAAGCATGCCAGGAACTCAT
CAAATGTGGTTGTAAGAAAATGTGTGGAGCGCGATGTAAATGCAAGAAAG
CGGGACTGAGTTGCACAGAGTTGTGTCAATGTGGTGGATGCTGAATTTTA
atattaatgatttttttatttttgtaagactttttatggaatttttagat
tttttatcaCAAGGATCGATAAGTTGGAGAAGTTTTTGcccgggggggca
cttaggcaaaaataggtacggggacgtgccgctggtcagggtaccttttt
cagtgttgcagaattactgacagggtatctaaaattgcaaaatcctgatc
tgacaggggcgcaatttcatgatgtgtgtctgacagggtctgtttttgcc
gtttttgctttTAGAGTTCTTTCGCAAATCGTTTTGACGCGGCGGTGAGC
AGACCCCTGCGAGGGGTaaacagctttttgcaaatacttatcgcacggcc
aagacaggcgctttgctgctGTTGTCTCGCACCACACGCCCGCCATTGCG
CCCTCTTAAAGGGATCGAGGCTAATTTCAACGATATCTCTATTGAACTAT
TTAGAATAAATGTTCAGCTGAATAGTGGTACTAACAACATTGtttccgga
aaatttttttaaaacttgtaTTCTTTTCGAGTTCGAAATCGAAACCTTCT
GAGTCTTGCGCATCTCCCACACAACATAGGTAATCAAACAAAGCAAGCAT
TTGCTCTCGTC Run BLAST on NCBI protein sequence of TCONS_00067280-protein >TCONS_00067280-protein ID=TCONS_00067280-protein|Name=TCONS_00067280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MNLLLLVIMYTEKKRENVTLYNRVIFFCDNTQYHFFRFRLSDSLDLEEED
FEMIQRFVVTLYDRTNPCTDVNECRRMLFTKKQRPVESLPPTQDALRLHV
HRTMNESSKFCNATERTMPLRNVLEWGYKKNERGMTVPRWMNQPEASKAC
QELIKCGCKKMCGARCKCKKAGLSCTELCQCGGC Run BLAST on NCBI transcript from alignment at scaffold_468:54776..56152- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067280 ID=TCONS_00067280|Name=TCONS_00067280|organism=Clytia hemisphaerica|type=transcript|length=1377bp|location=Sequence derived from alignment at scaffold_468:54776..56152- (Clytia hemisphaerica)
AACGAATAGCTGTCAATTATGTTACACCTTCTCTTATTCTTTCTCGCTAA
CTCATACAATACCACTCAATAAAAGGTCCATTGTGAATTATGAATTTGCT
ATTACTCGTCATCATGTATACAGAGAAAAAAAGAGAAAATGTCACTCTTT
ATAATAGGGTAATTTTTTTCTGCGACAACACTCAATATCATTTTTTTCGT
TTTAGGCTTTCCGATAGCCTCGATTTAGAAGAAGAAGATTTCGAAATGAT
TCAAAGATTTGTTGTTACTCTGTACGATCGCACAAATCCTTGTACGGATG
TTAATGAATGCCGGAGAATGTTGTTTACAAAGAAGCAGAGACCAGTTGAG
TCTTTGCCCCCAACACAGGATGCATTACGGTTGCACGTACATAGGACGAT
GAATGAATCCAGGTAAAAAGATTTTATAAGATATCATTTTGTACCATTTA
CACATATTTCGGCAAATATCGATTATTTAGAAGCATTGGCTCGAAGAATA
TATTTCCTTCACTTCTTCTCTTATTTAGTAAATTTTGCAATGCAACAGAA
CGAACTATGCCTCTACGAAACGTGCTGGAATGGGGTTATAAGAAAAACGA
AAGAGGAATGACCGTTCCCAGATGGATGAATCAACCAGAAGCAAGCAAAG
CATGCCAGGAACTCATCAAATGTGGTTGTAAGAAAATGTGTGGAGCGCGA
TGTAAATGCAAGAAAGCGGGACTGAGTTGCACAGAGTTGTGTCAATGTGG
TGGATGCTGAATTTTAATATTAATGATTTTTTTATTTTTGTAAGACTTTT
TATGGAATTTTTAGATTTTTTATCACAAGGATCGATAAGTTGGAGAAGTT
TTTGCCCGGGGGGGCACTTAGGCAAAAATAGGTACGGGGACGTGCCGCTG
GTCAGGGTACCTTTTTCAGTGTTGCAGAATTACTGACAGGGTATCTAAAA
TTGCAAAATCCTGATCTGACAGGGGCGCAATTTCATGATGTGTGTCTGAC
AGGGTCTGTTTTTGCCGTTTTTGCTTTTAGAGTTCTTTCGCAAATCGTTT
TGACGCGGCGGTGAGCAGACCCCTGCGAGGGGTAAACAGCTTTTTGCAAA
TACTTATCGCACGGCCAAGACAGGCGCTTTGCTGCTGTTGTCTCGCACCA
CACGCCCGCCATTGCGCCCTCTTAAAGGGATCGAGGCTAATTTCAACGAT
ATCTCTATTGAACTATTTAGAATAAATGTTCAGCTGAATAGTGGTACTAA
CAACATTGTTTCCGGAAAATTTTTTTAAAACTTGTATTCTTTTCGAGTTC
GAAATCGAAACCTTCTGAGTCTTGCGCATCTCCCACACAACATAGGTAAT
CAAACAAAGCAAGCATTTGCTCTCGTC Coding sequence (CDS) from alignment at scaffold_468:54776..56152- >TCONS_00067280 ID=TCONS_00067280|Name=TCONS_00067280|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_468:54776..56152- (Clytia hemisphaerica)
TAAATTTTGCAATGCAACAGAACGAACTATGCCTCTACGAAACGTGCTGG
AATGGGGTTATAAGAAAAACGAAAGAGGAATGACCGTTCCCAGATGGATG
AATCAACCAGAAGCAAGCAAAGCATGCCAGGAACTCATCAAATGTGGTTG
TAAGAAAATGTGTGGAGCGCGATGTAAATGCAAGAAAGCGGGACTGAGTT
GCACAGAGTTGTGTCAATGTGGTGGATGCTGAATGAATTTGCTATTACTC
GTCATCATGTATACAGAGAAAAAAAGAGAAAATGTCACTCTTTATAATAG
GGTAATTTTTTTCTGCGACAACACTCAATATCATTTTTTTCGTTTTAGGC
TTTCCGATAGCCTCGATTTAGAAGAAGAAGATTTCGAAATGATTCAAAGA
TTTGTTGTTACTCTGTACGATCGCACAAATCCTTGTACGGATGTTAATGA
ATGCCGGAGAATGTTGTTTACAAAGAAGCAGAGACCAGTTGAGTCTTTGC
CCCCAACACAGGATGCATTACGGTTGCACGTACATAGGACGATGAATGAA
TCCAGTAAATTTTGCAATGCAACAGAACGAACTATGCCTCTACGAAACGT
GCTGGAATGGGGTTATAAGAAAAACGAAAGAGGAATGACCGTTCCCAGAT
GGATGAATCAACCAGAAGCAAGCAAAGCATGCCAGGAACTCATCAAATGT
GGTTGTAAGAAAATGTGTGGAGCGCGATGTAAATGCAAGAAAGCGGGACT
GAGTTGCACAGAGTTGTGTCAATGTGGTGGATGCTGAATGAATTTGCTAT
TACTCGTCATCATGTATACAGAGAAAAAAAGAGAAAATGTCACTCTTTAT
AATAGGGTAATTTTTTTCTGCGACAACACTCAATATCATTTTTTTCGTTT
TAGGCTTTCCGATAGCCTCGATTTAGAAGAAGAAGATTTCGAAATGATTC
AAAGATTTGTTGTTACTCTGTACGATCGCACAAATCCTTGTACGGATGTT
AATGAATGCCGGAGAATGTTGTTTACAAAGAAGCAGAGACCAGTTGAGTC
TTTGCCCCCAACACAGGATGCATTACGGTTGCACGTACATAGGACGATGA
ATGAATCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067280-exon-scaffold_468-1575043694:55741..56152 | TCONS_00067280-exon-scaffold_468-1575043694:55741..56152 | Clytia hemisphaerica | exon |
| TCONS_00067280-exon-scaffold_468-1575043694:54776..55624 | TCONS_00067280-exon-scaffold_468-1575043694:54776..55624 | Clytia hemisphaerica | exon |
| TCONS_00067280-exon-scaffold_468-1510915933:55741..56152 | TCONS_00067280-exon-scaffold_468-1510915933:55741..56152 | Clytia hemisphaerica | exon |
| TCONS_00067280-exon-scaffold_468-1510915933:54776..55624 | TCONS_00067280-exon-scaffold_468-1510915933:54776..55624 | Clytia hemisphaerica | exon |
| TCONS_00067280-exon-scaffold_468-1491911889:55741..56152 | TCONS_00067280-exon-scaffold_468-1491911889:55741..56152 | Clytia hemisphaerica | exon |
| TCONS_00067280-exon-scaffold_468-1491911889:54776..55624 | TCONS_00067280-exon-scaffold_468-1491911889:54776..55624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_468 | supercontig | scaffold_468:54776..56152 - |
Blast
The following BLAST results are available for this feature:
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