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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067278 ID=TCONS_00067278|Name=TCONS_00067278|organism=Clytia hemisphaerica|type=transcript|length=536bp
TCAAAAGGAACCATACAACCACCAAAAAGTCGAAAGAAATTGACAAATGA
ATTTGAACACTTGAAAATTGGAGCAGAGAATTTGCATATGAAAGTGACTG
TTTCTGAAGAGAATGGATCGGCTGAAACAGAAATCCACGtcacaaaacaa
caacaaaagttGATTAAACTTGCCATGGCAAACAATAAGAAGCACCTGTT
AAATTACATTCTATCGAATCTGACACCTGAAGATACTGAACTGAATTCCA
TTGTTCTTAAGTTCATTGGTAAGAACATCAAAAGTGAAATCAAACAGATC
TGTTCAAGCAAAAATGAAACAACTACCTTTCGATGTAATGATGTTTCGAA
ATTGACCGAATTCTCATATGATACTCAATATCAAGAATTTAAAACTAATG
CTCCGTTCACATTCAATTCTATTGTCAGCAACGCTAAAAACCCAAGAGAA
AATCGTAAtaagaacaagtgatacttttatggacctacctggttttacat
ttaacacatttataattgatatctacgtgacgtgac Run BLAST on NCBI protein sequence of TCONS_00067278-protein >TCONS_00067278-protein ID=TCONS_00067278-protein|Name=TCONS_00067278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
SKGTIQPPKSRKKLTNEFEHLKIGAENLHMKVTVSEENGSAETEIHVTKQ
QQKLIKLAMANNKKHLLNYILSNLTPEDTELNSIVLKFIGKNIKSEIKQI
CSSKNETTTFRCNDVSKLTEFSYDTQYQEFKTNAPFTFNSIVSNAKNPRE
NRNKNK Run BLAST on NCBI transcript from alignment at scaffold_468:24263..25997- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067278 ID=TCONS_00067278|Name=TCONS_00067278|organism=Clytia hemisphaerica|type=transcript|length=1735bp|location=Sequence derived from alignment at scaffold_468:24263..25997- (Clytia hemisphaerica)
TCAAAAGGAACCATACAACCACCAAAAAGTCGAAAGAAATTGACAAATGA
ATTTGAACACTTGAAAATTGGAGCAGAGAATTTGCATATGAAAGTGAGTA
TTTATTTTTCAAACTTTTTCTTGTACATCAATAAAAGGAACTTTAAACCG
GTTTAAAATCAATACATGTTTTTTATAAGCATGGGGTAAACTTTTGTGAG
CCTCGTTTACCTAATGCTTAGCAAAATTAATTTTTCGAGTCTTGGTTGAA
TATGCATATGCTATGCTTATTTGATAGTTCAATTTGAACATTATGGGTGT
TTTTTTGTAATTTGTGAGATATTTTTTAAAATTGAGGCCAAGCATATGTT
TAGGCAAACTCTTAGTTTTTGCAAGGATTGAACCTGAATATGCTTATAAT
ATGTAATTCTTGAAATCTGAGGCTCAGATTGTAAATAATTTGTTACTAGG
TTTTGGAAAAATTGCCTCGTTTTATTTTGGAATTTTAGAATCTTAGAGTT
TTAAATATTTTTTGTTCTTGAGTTTTATTGATGCTTTGTATTTTAATTTC
TTTTACATGTGATAATGATATATGCACGCTTTTTTACTACAACGTCTTAA
TTTCAGCTGAGGCTGGATGTTCTTATTTTCTTATCAATTTTCAGTCTAAA
ATGTTCTTATTGGTGTTCTTGAATTCGTTAAAATGTTAAAATTGGCTTCA
AAATCGAGTAAATCTGCTACTTTTTTTAGGGGAAAAAATTAGGTACAGCA
TGACACAAAATTCCTGAATGACTCCTAATGAGGTTTTCAGCAAATTTTGT
CAAATGTTTTTGATTCTCGGGCTGAACATGTTCTTAAGATGTTCCTAAAT
GTTCTTATAAACTGGGTTCTAATAAATAATAAAACGTGTTCTTCGACAAT
AAGCTCTTTTTTAATATGATCTTGAGGCTGTAAAATTCGAAAAAAATTTA
GGATTTTGGTGATTTTCTTTGGAAAAGTGTTTTTTTTGTTTTTCTTTGTT
TTATTTTATCTATTCTAACAATTTTTAGGATAGAAATTACAAAAACCTTC
TAATTTCTGTCTGATTTTTGCCTTTTTTCAGGGTAAATAGGGAAAATTTT
TCAAAGCTTTCTTCCGAAAATATAAATTTAATGACAATAGAGGATTGAAA
GTAAATTGAGCTTTCTTTATTTTAAGGTGACTGTTTCTGAAGAGAATGGA
TCGGCTGAAACAGAAATCCACGTCACAAAACNAAAATAGAAATTTAATGA
CAATAGAGATTTGAAAGTAAATTGAGCTTTCTTTATTTTAAGGTGACTGT
TTCTGAAGAGAATGGATCGGCTGAAACAGAAATCCACGTCACAAAACAAC
AACAAAAGTTGATTAAACTTGCCATGGCAAACAATAAGAAGCACCTGTTA
AATTACATTCTATCGAATCTGACACCTGAAGATACTGAACTGAATTCCAT
TGTTCTTAAGTTCATTGGTAAGAACATCAAAAGTGAAATCAAACAGATCT
GTTCAAGCAAAAATGAAACAACTACCTTTCGATGTAATGATGTTTCGAAA
TTGACCGAATTCTCATATGATACTCAATATCAAGAATTTAAAACTAATGC
TCCGTTCACATTCAATTCTATTGTCAGCAACGCTAAAAACCCAAGAGAAA
ATCGTAATAAGAACAAGTGATACTTTTATGGACCTACCTGGTTTTACATT
TAACACATTTATAATTGATATCTACGTGACGTGAC Coding sequence (CDS) from alignment at scaffold_468:24263..25997- >TCONS_00067278 ID=TCONS_00067278|Name=TCONS_00067278|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_468:24263..25997- (Clytia hemisphaerica)
GTGACTGTTTCTGAAGAGAATGGATCGGCTGAAACAGAAATCCACGTCAC
AAAACAACAACAAAAGTTGATTAAACTTGCCATGGCAAACAATAAGAAGC
ACCTGTTAAATTACATTCTATCGAATCTGACACCTGAAGATACTGAACTG
AATTCCATTGTTCTTAAGTTCATTGGTAAGAACATCAAAAGTGAAATCAA
ACAGATCTGTTCAAGCAAAAATGAAACAACTACCTTTCGATGTAATGATG
TTTCGAAATTGACCGAATTCTCATATGATACTCAATATCAAGAATTTAAA
ACTAATGCTCCGTTCACATTCAATTCTATTGTCAGCAACGCTAAAAACCC
AAGAGAAAATCGTAATAAGAACAAGTGATCAAAAGGAACCATACAACCAC
CAAAAAGTCGAAAGAAATTGACAAATGAATTTGAACACTTGAAAATTGGA
GCAGAGAATTTGCATATGAAAGTGACTGTTTCTGAAGAGAATGGATCGGC
TGAAACAGAAATCCACGTCACAAAACAACAACAAAAGTTGATTAAACTTG
CCATGGCAAACAATAAGAAGCACCTGTTAAATTACATTCTATCGAATCTG
ACACCTGAAGATACTGAACTGAATTCCATTGTTCTTAAGTTCATTGGTAA
GAACATCAAAAGTGAAATCAAACAGATCTGTTCAAGCAAAAATGAAACAA
CTACCTTTCGATGTAATGATGTTTCGAAATTGACCGAATTCTCATATGAT
ACTCAATATCAAGAATTTAAAACTAATGCTCCGTTCACATTCAATTCTAT
TGTCAGCAACGCTAAAAACCCAAGAGAAAATCGTAATAAGAACAAGTGAT
CAAAAGGAACCATACAACCACCAAAAAGTCGAAAGAAATTGACAAATGAA
TTTGAACACTTGAAAATTGGAGCAGAGAATTTGCATATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067278-exon-scaffold_468-1575043694:25905..25997 | TCONS_00067278-exon-scaffold_468-1575043694:25905..25997 | Clytia hemisphaerica | exon |
| TCONS_00067278-exon-scaffold_468-1575043694:24263..24705 | TCONS_00067278-exon-scaffold_468-1575043694:24263..24705 | Clytia hemisphaerica | exon |
| TCONS_00067278-exon-scaffold_468-1510915933:25905..25997 | TCONS_00067278-exon-scaffold_468-1510915933:25905..25997 | Clytia hemisphaerica | exon |
| TCONS_00067278-exon-scaffold_468-1510915933:24263..24705 | TCONS_00067278-exon-scaffold_468-1510915933:24263..24705 | Clytia hemisphaerica | exon |
| TCONS_00067278-exon-scaffold_468-1491911889:25905..25997 | TCONS_00067278-exon-scaffold_468-1491911889:25905..25997 | Clytia hemisphaerica | exon |
| TCONS_00067278-exon-scaffold_468-1491911889:24263..24705 | TCONS_00067278-exon-scaffold_468-1491911889:24263..24705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_468 | supercontig | scaffold_468:24263..25997 - |
Blast
The following BLAST results are available for this feature:
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