Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067254 ID=TCONS_00067254|Name=TCONS_00067254|organism=Clytia hemisphaerica|type=transcript|length=2747bp
ATATAGCAACCCTAGCAAAATTCTTGCTTAAAAACGATacataaaattga
taaaaatatttgattacATCCTCagctaaaatatcaaaaacctaTAAAAA
TGTGTAACGTTTATTTTTGGTATCGCTTTCGTTTCAAAGGCAATGGTAAC
ATTTCTTTGAACGATTGGGGAATCTCTACAGTTATCATTTCCCCTTGATT
GTTGAAACTGAAATGTAATAACTTTTTGAAGGAGTTGATTGTTTTCAATG
GGTTGTTCATTGACTTTTTAGCTTTCTTAGTGTCTGGTTGATCCTCTGTT
TCCTCTGATTGAATATCCACGGTTGCGTTTTCCAACAATTTTCCAAACTC
ATTGAAAGCTTGCACGAAGATTTCACTTGGATTGACAGGATTGACACAGA
CTTGATTTAATAAATGGTGATCACGACTCAACTTTTTAAAGATACCAGCA
TCATTAAGATCAAACAGCCAGGTTGTGAATTTACCTTCTTTATAATCAAA
TTCAAAGACATCTTTGGCACTTGTTGATAACATGATTCGTGAGCTTTGCG
GGTGGAATGTGAAACTGCTGATTTTGTCGGATACGGAAGGGACTTGTGAA
GCATATTCAAGGCCACTTTCAGAGATTCGAAagataaaaatgttcgattc
tGCATCAACCAGGCCAATGGTTTCATTATCATTGGCAACTTTCAAGAAAC
GATACGGTaaactaattttgatttttgaaatactgAGTTCAAACTCattc
tcattttgaaaatcaacTAAATGCAGTTTCTTGGCAAAGGTTACTCCAAC
CATGTAGCGTGAATCAGGAGTGAATGCAATTTTTGAGAGTGGAGGTAAAG
ATCTGTAGATCTTATTCAACTTCAATGGAGATTGTTCTATCTCAAAAAGC
CTAGATTTACCAATGGTAGAATAACAAACATATTTACCACAAGCTGAGAG
AGCTGAGCAAAAGATATGGTCATCCCCATCGCAATTAATTTCTAGCAATT
GCTTACTTTCCTTCAAACTCAAATCTTGGTTTGATTCCAATTGccacaaa
tttaatttgttattGGACCGATAAAGCAATTGATTTGCATCAGGGGCGAC
TTGGCAAACATCAGTTGGCGTATTGAAATATTTCTTCATTTTAGCAATTG
TTAACTTATTCGTTGGGACTGCATAAAGGTAAGGGTCAACACCAGCAGCA
ATAACAAAATTGCGATCAGTTTGTGGATTTTTAAAGCACACAAGGGCTCT
GATATCATAATCAGTCAATTGAATATGTTTGTTCATTGTCCATTTCTTCT
CATTATCAACTAAACGAGAATTGAACTGAACAACTTTACCATCAACACCA
CTGGAATAAACTTCCTCATAACAAGGGGCTAATGTTAACACATCAGCTTC
GTGTGACTTGAAAGAAGTCAGCAGAGTCCCTGTGTGACCATCCCAGAACT
GTGTGCAGCCTTTTGAATCACCTGTCACAACGGTAAAATCATCCATAACT
TCAACAGCCCATACCATCGTATTCTCATCTCCTTTTCCATCTGTTGTGAT
TCTTGATACAATTTGACCTGATTCAAAATTATAAATGCGAATTGTACTTT
CAAATCCACCTGTCACCAAATTAGCATCGTCCTTACTCCAAGCAAGAGAT
AATATTCTACTCTCTTGCTTGTGTAAACTTCTTTCATAGTTCAACCCATG
AGACATCAATTTGAAAATACGAACACTTCCATCCTCGCAACCAGCAGCCA
GTAAATTCTTTTTATGGTTGAATTTCAGACACCATACAGGACCACCACAA
GAGTTCTCTGAATATTTGGGAACAAGGTTTTTCAAATCCCATTCAATAAT
TTGTCCATTTAAACCTCCGGAAAAGAGTCTCCCATTGTTCCACGCAAGAT
GTTCAGCAGTTCTACCATTTTGGCCAGGGATAGTAATATCTACCATGAAA
TGGTTTGAAGGGTCTCTTATTTCAATACTACCATCATCTAAAGAGACTGC
CAGCCTTGGAGGATTACAATTAACATCAAGTGCTGCTGAAATAGTAGCTT
TTGGCTTGTGTTGAATAAATCTAACTCTGTGAACTTTATATTGAGACATC
TAAAATTAGAAGAAAAACCATTAAAAGGAGGACAATTCATTTTTAATGCA
TAATGCTTACAAGGATATTTTTCCAAACCTGTTGGTGTCAACTGTATTTT
CATGACTCACAGTTAGTTCAAAATGCAAAGGTTGCAGGTCAACAGAAATG
GAAAATTCACATGTAACGTATAATTATTCAAAACgtgtttctgaaaaata
ttatttgcaATATTATTGTATATAAAATAATGCTATTTAGAAGATTTCAA
TGACAAATCATCAATCCCAAATATCAGTGGTCAAAACAGCTTTTCTCTGT
GAGACAGAAAATTTCTTTATAGAAATATTTTAGTATACAGTGACACCCAC
AGGCCATTGTAGGGGCTGAGggtcagaaaattttcagattttttacccCC
TAGATTGGCTAGAAAAGcactaaaatttgttaattaaaaCAACTCAGAAT
GCTCTTAAAATGCCTATCATACAgcgaaaatatatatatttatctaaaat
aggttgaaaaataaaaataccgggtgcaccaaaaaaaagtatacaacttt
gtcgagatattgtgagcgtcaggatttaaattttttgttcattctttttt
tatcgcatagaggatgctctaacttgaattttgagctatcatacctT Run BLAST on NCBI protein sequence of TCONS_00067254-protein >TCONS_00067254-protein ID=TCONS_00067254-protein|Name=TCONS_00067254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp
MSQYKVHRVRFIQHKPKATISAALDVNCNPPRLAVSLDDGSIEIRDPSNH
FMVDITIPGQNGRTAEHLAWNNGRLFSGGLNGQIIEWDLKNLVPKYSENS
CGGPVWCLKFNHKKNLLAAGCEDGSVRIFKLMSHGLNYERSLHKQESRIL
SLAWSKDDANLVTGGFESTIRIYNFESGQIVSRITTDGKGDENTMVWAVE
VMDDFTVVTGDSKGCTQFWDGHTGTLLTSFKSHEADVLTLAPCYEEVYSS
GVDGKVVQFNSRLVDNEKKWTMNKHIQLTDYDIRALVCFKNPQTDRNFVI
AAGVDPYLYAVPTNKLTIAKMKKYFNTPTDVCQVAPDANQLLYRSNNKLN
LWQLESNQDLSLKESKQLLEINCDGDDHIFCSALSACGKYVCYSTIGKSR
LFEIEQSPLKLNKIYRSLPPLSKIAFTPDSRYMVGVTFAKKLHLVDFQNE
NEFELSISKIKISLPYRFLKVANDNETIGLVDAESNIFIFRISESGLEYA
SQVPSVSDKISSFTFHPQSSRIMLSTSAKDVFEFDYKEGKFTTWLFDLND
AGIFKKLSRDHHLLNQVCVNPVNPSEIFVQAFNEFGKLLENATVDIQSEE
TEDQPDTKKAKKSMNNPLKTINSFKKLLHFSFNNQGEMITVEIPQSFKEM
LPLPLKRKRYQK Run BLAST on NCBI transcript from alignment at scaffold_466:201795..204541 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067254 ID=TCONS_00067254|Name=TCONS_00067254|organism=Clytia hemisphaerica|type=transcript|length=2747bp|location=Sequence derived from alignment at scaffold_466:201795..204541 (Clytia hemisphaerica)
Aaggtatgatagctcaaaattcaagttagagcatcctctatgcgataaaa
aaagaatgaacaaaaaatttaaatcctgacgctcacaatatctcgacaaa
gttgtatacttttttttggtgcacccggtatttttatttttcaacctatt
ttagataaatatatatattttcgcTGTATGATAGGCATTTTAAGAGCATT
CTGAGTTGttttaattaacaaattttagtgCTTTTCTAGCCAATCTAGGg
ggtaaaaaatctgaaaattttctgaccCTCAGCCCCTACAATGGCCTGTG
GGTGTCACTGTATACTAAAATATTTCTATAAAGAAATTTTCTGTCTCACA
GAGAAAAGCTGTTTTGACCACTGATATTTGGGATTGATGATTTGTCATTG
AAATCTTCTAAATAGCATTATTTTATATACAATAATATtgcaaataatat
ttttcagaaacacGTTTTGAATAATTATACGTTACATGTGAATTTTCCAT
TTCTGTTGACCTGCAACCTTTGCATTTTGAACTAACTGTGAGTCATGAAA
ATACAGTTGACACCAACAGGTTTGGAAAAATATCCTTGTAAGCATTATGC
ATTAAAAATGAATTGTCCTCCTTTTAATGGTTTTTCTTCTAATTTTAGAT
GTCTCAATATAAAGTTCACAGAGTTAGATTTATTCAACACAAGCCAAAAG
CTACTATTTCAGCAGCACTTGATGTTAATTGTAATCCTCCAAGGCTGGCA
GTCTCTTTAGATGATGGTAGTATTGAAATAAGAGACCCTTCAAACCATTT
CATGGTAGATATTACTATCCCTGGCCAAAATGGTAGAACTGCTGAACATC
TTGCGTGGAACAATGGGAGACTCTTTTCCGGAGGTTTAAATGGACAAATT
ATTGAATGGGATTTGAAAAACCTTGTTCCCAAATATTCAGAGAACTCTTG
TGGTGGTCCTGTATGGTGTCTGAAATTCAACCATAAAAAGAATTTACTGG
CTGCTGGTTGCGAGGATGGAAGTGTTCGTATTTTCAAATTGATGTCTCAT
GGGTTGAACTATGAAAGAAGTTTACACAAGCAAGAGAGTAGAATATTATC
TCTTGCTTGGAGTAAGGACGATGCTAATTTGGTGACAGGTGGATTTGAAA
GTACAATTCGCATTTATAATTTTGAATCAGGTCAAATTGTATCAAGAATC
ACAACAGATGGAAAAGGAGATGAGAATACGATGGTATGGGCTGTTGAAGT
TATGGATGATTTTACCGTTGTGACAGGTGATTCAAAAGGCTGCACACAGT
TCTGGGATGGTCACACAGGGACTCTGCTGACTTCTTTCAAGTCACACGAA
GCTGATGTGTTAACATTAGCCCCTTGTTATGAGGAAGTTTATTCCAGTGG
TGTTGATGGTAAAGTTGTTCAGTTCAATTCTCGTTTAGTTGATAATGAGA
AGAAATGGACAATGAACAAACATATTCAATTGACTGATTATGATATCAGA
GCCCTTGTGTGCTTTAAAAATCCACAAACTGATCGCAATTTTGTTATTGC
TGCTGGTGTTGACCCTTACCTTTATGCAGTCCCAACGAATAAGTTAACAA
TTGCTAAAATGAAGAAATATTTCAATACGCCAACTGATGTTTGCCAAGTC
GCCCCTGATGCAAATCAATTGCTTTATCGGTCCaataacaaattaaattt
gtggCAATTGGAATCAAACCAAGATTTGAGTTTGAAGGAAAGTAAGCAAT
TGCTAGAAATTAATTGCGATGGGGATGACCATATCTTTTGCTCAGCTCTC
TCAGCTTGTGGTAAATATGTTTGTTATTCTACCATTGGTAAATCTAGGCT
TTTTGAGATAGAACAATCTCCATTGAAGTTGAATAAGATCTACAGATCTT
TACCTCCACTCTCAAAAATTGCATTCACTCCTGATTCACGCTACATGGTT
GGAGTAACCTTTGCCAAGAAACTGCATTTAgttgattttcaaaatgagaa
tGAGTTTGAACTcagtatttcaaaaatcaaaattagtttACCGTATCGTT
TCTTGAAAGTTGCCAATGATAATGAAACCATTGGCCTGGTTGATGCagaa
tcgaacatttttatctTTCGAATCTCTGAAAGTGGCCTTGAATATGCTTC
ACAAGTCCCTTCCGTATCCGACAAAATCAGCAGTTTCACATTCCACCCGC
AAAGCTCACGAATCATGTTATCAACAAGTGCCAAAGATGTCTTTGAATTT
GATTATAAAGAAGGTAAATTCACAACCTGGCTGTTTGATCTTAATGATGC
TGGTATCTTTAAAAAGTTGAGTCGTGATCACCATTTATTAAATCAAGTCT
GTGTCAATCCTGTCAATCCAAGTGAAATCTTCGTGCAAGCTTTCAATGAG
TTTGGAAAATTGTTGGAAAACGCAACCGTGGATATTCAATCAGAGGAAAC
AGAGGATCAACCAGACACTAAGAAAGCTAAAAAGTCAATGAACAACCCAT
TGAAAACAATCAACTCCTTCAAAAAGTTATTACATTTCAGTTTCAACAAT
CAAGGGGAAATGATAACTGTAGAGATTCCCCAATCGTTCAAAGAAATGTT
ACCATTGCCTTTGAAACGAAAGCGATACCAAAAATAAACGTTACACATTT
TTAtaggtttttgatattttagctGAGGATgtaatcaaatatttttatca
attttatgtATCGTTTTTAAGCAAGAATTTTGCTAGGGTTGCTATAT Coding sequence (CDS) from alignment at scaffold_466:201795..204541 >TCONS_00067254 ID=TCONS_00067254|Name=TCONS_00067254|organism=Clytia hemisphaerica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_466:201795..204541 (Clytia hemisphaerica)
ATGTCTCAATATAAAGTTCACAGAGTTAGATTTATTCAACACAAGCCAAA
AGCTACTATTTCAGCAGCACTTGATGTTAATTGTAATCCTCCAAGGCTGG
CAGTCTCTTTAGATGATGGTAGTATTGAAATAAGAGACCCTTCAAACCAT
TTCATGGTAGATATTACTATCCCTGGCCAAAATGGTAGAACTGCTGAACA
TCTTGCGTGGAACAATGGGAGACTCTTTTCCGGAGGTTTAAATGGACAAA
TTATTGAATGGGATTTGAAAAACCTTGTTCCCAAATATTCAGAGAACTCT
TGTGGTGGTCCTGTATGGTGTCTGAAATTCAACCATAAAAAGAATTTACT
GGCTGCTGGTTGCGAGGATGGAAGTGTTCGTATTTTCAAATTGATGTCTC
ATGGGTTGAACTATGAAAGAAGTTTACACAAGCAAGAGAGTAGAATATTA
TCTCTTGCTTGGAGTAAGGACGATGCTAATTTGGTGACAGGTGGATTTGA
AAGTACAATTCGCATTTATAATTTTGAATCAGGTCAAATTGTATCAAGAA
TCACAACAGATGGAAAAGGAGATGAGAATACGATGGTATGGGCTGTTGAA
GTTATGGATGATTTTACCGTTGTGACAGGTGATTCAAAAGGCTGCACACA
GTTCTGGGATGGTCACACAGGGACTCTGCTGACTTCTTTCAAGTCACACG
AAGCTGATGTGTTAACATTAGCCCCTTGTTATGAGGAAGTTTATTCCAGT
GGTGTTGATGGTAAAGTTGTTCAGTTCAATTCTCGTTTAGTTGATAATGA
GAAGAAATGGACAATGAACAAACATATTCAATTGACTGATTATGATATCA
GAGCCCTTGTGTGCTTTAAAAATCCACAAACTGATCGCAATTTTGTTATT
GCTGCTGGTGTTGACCCTTACCTTTATGCAGTCCCAACGAATAAGTTAAC
AATTGCTAAAATGAAGAAATATTTCAATACGCCAACTGATGTTTGCCAAG
TCGCCCCTGATGCAAATCAATTGCTTTATCGGTCCaataacaaattaaat
ttgtggCAATTGGAATCAAACCAAGATTTGAGTTTGAAGGAAAGTAAGCA
ATTGCTAGAAATTAATTGCGATGGGGATGACCATATCTTTTGCTCAGCTC
TCTCAGCTTGTGGTAAATATGTTTGTTATTCTACCATTGGTAAATCTAGG
CTTTTTGAGATAGAACAATCTCCATTGAAGTTGAATAAGATCTACAGATC
TTTACCTCCACTCTCAAAAATTGCATTCACTCCTGATTCACGCTACATGG
TTGGAGTAACCTTTGCCAAGAAACTGCATTTAgttgattttcaaaatgag
aatGAGTTTGAACTcagtatttcaaaaatcaaaattagtttACCGTATCG
TTTCTTGAAAGTTGCCAATGATAATGAAACCATTGGCCTGGTTGATGCag
aatcgaacatttttatctTTCGAATCTCTGAAAGTGGCCTTGAATATGCT
TCACAAGTCCCTTCCGTATCCGACAAAATCAGCAGTTTCACATTCCACCC
GCAAAGCTCACGAATCATGTTATCAACAAGTGCCAAAGATGTCTTTGAAT
TTGATTATAAAGAAGGTAAATTCACAACCTGGCTGTTTGATCTTAATGAT
GCTGGTATCTTTAAAAAGTTGAGTCGTGATCACCATTTATTAAATCAAGT
CTGTGTCAATCCTGTCAATCCAAGTGAAATCTTCGTGCAAGCTTTCAATG
AGTTTGGAAAATTGTTGGAAAACGCAACCGTGGATATTCAATCAGAGGAA
ACAGAGGATCAACCAGACACTAAGAAAGCTAAAAAGTCAATGAACAACCC
ATTGAAAACAATCAACTCCTTCAAAAAGTTATTACATTTCAGTTTCAACA
ATCAAGGGGAAATGATAACTGTAGAGATTCCCCAATCGTTCAAAGAAATG
TTACCATTGCCTTTGAAACGAAAGCGATACCAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067254-exon-scaffold_466-1491911889:201795..204541 | TCONS_00067254-exon-scaffold_466-1491911889:201795..204541 | Clytia hemisphaerica | exon |
| TCONS_00067254-exon-scaffold_466-1510915933:201795..204541 | TCONS_00067254-exon-scaffold_466-1510915933:201795..204541 | Clytia hemisphaerica | exon |
| TCONS_00067254-exon-scaffold_466-1575043694:201795..204541 | TCONS_00067254-exon-scaffold_466-1575043694:201795..204541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:201795..204541 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00067254 vs. Swiss-Prot (Human)
Match: UTP4 (U3 small nucleolar RNA-associated protein 4 homolog OS=Homo sapiens GN=UTP4 PE=1 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 4.729e-71 Identity = 184/701 (26.25%), Postives = 335/701 (47.79%), Query Frame = -1 Query: 120 MSQYKVHRVRFIQHKPKATISAALDVNCNPPRLAVSLDDGSIEIRDPSNHFMVDITIPGQNGRTAEHLAWNNG-RLFSGGLNGQIIEWDLKNLVPKYSENSCGGPVWCLKFNHKKNLLAAGCEDGSVRIFKLMSHGLNYERSLHKQESRILSLAWSKDDANLVTGGFESTIRIYNFESGQIVSRITTD----GKGDENTMVWAVEVMDDFTVVTGDSKGCTQFWDGHTGTLLTSFKSHEADVLTLAPCYEE--VYSSGVDGKVVQFNSRLV---DNEKKWTMNKHIQLTDYDIRALVCFKNPQTDRNFVIAAGVDPYLYAVP-TNKLTI----AKMKKYFNTPTDVCQVAPDANQLLYRSNNKLNLWQLES------NQD-LSL-KESKQLLEINCDGDDHIFCSALSACGKYVCYSTIGKSRLFEI--EQSPLKLNKIYRSLPPLSK----IAFTPDSRYMVGVTFAKKLHLVD-----FQNENEFELSISKIKISLPYRFLKVANDNETIGLVDAESNIFIFRISESGLEYASQVPSVSDKISSFTFHPQSSRIMLSTSAKDVFEFDYKEGKFTTWLFDLNDAGIFKKLSRDHHLLNQVCVNPVNPSEIFVQAFNEFGKLLENATVDIQSEET---EDQPDTKKA---KKSMNNPLKTINSFKKLLHFSFNNQGEMITVEIP-QSFKEMLPLPLKRKRY 2099
M ++KVHRVRF + P A + N RLAVS DG++EI + S ++ + PG R E L W G RLFS GLNG+I+E+DL+ L KY+ ++ GGP+W + + + L GCEDGSV++F++ + +ER+ +Q+SRILSL+W ++ G + I +++ +SG V ++ D G +VW V + D T+++ DS G QFWD TGTL+ S ADV ++A +E +G V F V +EK+W K Q +D+R + +P +I+ G D +L P K+ + A ++K + + LL++ + L LW+L S N D L L K + LL + G ++I CS +S CG ++ YST+ + L+ + E + L ++ + +P + I F+ DS + + LH+V F++ + F+ ++ L V+ D + + + ++ + + L+ VP+ + +++ P ++ ++++ S + VFE+ + ++T W + G + + + +P P I + + + + + ++ + +++T P T ++ ++ + K +K LL ++ ++ VE P LP P+K+K++
Sbjct: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSN--RLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVA--HSPTA----LISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSK-MPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMC---LLAVSPDGNWLAASGTSAGVHVYNVKQ--LKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLH--DAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKF 684
The following BLAST results are available for this feature:
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