TCONS_00067254-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067254-protein
Unique Name	TCONS_00067254-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	662

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067254-protein ID=TCONS_00067254-protein|Name=TCONS_00067254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp
MSQYKVHRVRFIQHKPKATISAALDVNCNPPRLAVSLDDGSIEIRDPSNH
FMVDITIPGQNGRTAEHLAWNNGRLFSGGLNGQIIEWDLKNLVPKYSENS
CGGPVWCLKFNHKKNLLAAGCEDGSVRIFKLMSHGLNYERSLHKQESRIL
SLAWSKDDANLVTGGFESTIRIYNFESGQIVSRITTDGKGDENTMVWAVE
VMDDFTVVTGDSKGCTQFWDGHTGTLLTSFKSHEADVLTLAPCYEEVYSS
GVDGKVVQFNSRLVDNEKKWTMNKHIQLTDYDIRALVCFKNPQTDRNFVI
AAGVDPYLYAVPTNKLTIAKMKKYFNTPTDVCQVAPDANQLLYRSNNKLN
LWQLESNQDLSLKESKQLLEINCDGDDHIFCSALSACGKYVCYSTIGKSR
LFEIEQSPLKLNKIYRSLPPLSKIAFTPDSRYMVGVTFAKKLHLVDFQNE
NEFELSISKIKISLPYRFLKVANDNETIGLVDAESNIFIFRISESGLEYA
SQVPSVSDKISSFTFHPQSSRIMLSTSAKDVFEFDYKEGKFTTWLFDLND
AGIFKKLSRDHHLLNQVCVNPVNPSEIFVQAFNEFGKLLENATVDIQSEE
TEDQPDTKKAKKSMNNPLKTINSFKKLLHFSFNNQGEMITVEIPQSFKEM
LPLPLKRKRYQK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042013	XLOC_042013	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067254	TCONS_00067254	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR024977	Apc4_WD40_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 496..535 e-value: 420.0 score: 0.4 coord: 223..260 e-value: 3.0 score: 14.0 coord: 135..174 e-value: 0.0017 score: 27.6 coord: 50..88 e-value: 36.0 score: 7.2 coord: 13..46 e-value: 130.0 score: 3.7 coord: 91..130 e-value: 0.0022 score: 27.2 coord: 411..446 e-value: 100.0 score: 4.4 coord: 177..220 e-value: 27.0 score: 8.0
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 142..183 score: 10.776
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 437..589 e-value: 8.5E-7 score: 27.7
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 272..436 e-value: 5.2E-8 score: 31.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 10..271 e-value: 2.4E-38 score: 131.1
IPR024977	Anaphase-promoting complex subunit 4, WD40 domain	PFAM	PF12894	ANAPC4_WD40	coord: 108..199 e-value: 6.5E-9 score: 35.9
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 75..269 score: 16.612
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 295..568
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 22..265 coord: 374..449

Blast

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BLAST of TCONS_00067254-protein vs. Swiss-Prot (Human)
Match: UTP4 (U3 small nucleolar RNA-associated protein 4 homolog OS=Homo sapiens GN=UTP4 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 9.373e-74
Identity = 184/701 (26.25%), Postives = 335/701 (47.79%), Query Frame = 0

Query:    1 MSQYKVHRVRFIQHKPKATISAALDVNCNPPRLAVSLDDGSIEIRDPSNHFMVDITIPGQNGRTAEHLAWNNG-RLFSGGLNGQIIEWDLKNLVPKYSENSCGGPVWCLKFNHKKNLLAAGCEDGSVRIFKLMSHGLNYERSLHKQESRILSLAWSKDDANLVTGGFESTIRIYNFESGQIVSRITTD----GKGDENTMVWAVEVMDDFTVVTGDSKGCTQFWDGHTGTLLTSFKSHEADVLTLAPCYEE--VYSSGVDGKVVQFNSRLV---DNEKKWTMNKHIQLTDYDIRALVCFKNPQTDRNFVIAAGVDPYLYAVP-TNKLTI----AKMKKYFNTPTDVCQVAPDANQLLYRSNNKLNLWQLES------NQD-LSL-KESKQLLEINCDGDDHIFCSALSACGKYVCYSTIGKSRLFEI--EQSPLKLNKIYRSLPPLSK----IAFTPDSRYMVGVTFAKKLHLV-----DFQNENEFELSISKIKISLPYRFLKVANDNETIGLVDAESNIFIFRISESGLEYASQVPSVSDKISSFTFHPQSSRIMLSTSAKDVFEFDYKEGKFTTWLFDLNDAGIFKKLSRDHHLLNQVCVNPVNPSEIFVQAFNEFGKLLENATVDIQSEET---EDQPDTKKA---KKSMNNPLKTINSFKKLLHFSFNNQGEMITVEIP-QSFKEMLPLPLKRKRY 660
            M ++KVHRVRF  + P      A +   N  RLAVS  DG++EI + S ++  +   PG   R  E L W  G RLFS GLNG+I+E+DL+ L  KY+ ++ GGP+W +  +   + L  GCEDGSV++F++    + +ER+  +Q+SRILSL+W     ++  G  +  I +++ +SG  V ++  D    G      +VW V  + D T+++ DS G  QFWD  TGTL+ S     ADV ++A   +E        +G V  F    V    +EK+W   K  Q   +D+R +    +P      +I+ G D +L   P   K+ +    A ++K       +   +     LL++  + L LW+L S      N D L L K +  LL +   G ++I CS +S CG ++ YST+ +  L+ +  E   + L ++ + +P   +    I F+ DS  +   +    LH+V      F++ + F+     ++       L V+ D   +      + + ++ + +  L+    VP+ +  +++    P ++ ++++ S + VFE+   + ++T W   +   G      +    +  +  +P  P  I +   + +   + + ++ + +++T      P T ++   ++   +  K    +K LL     ++  ++ VE P       LP P+K+K++
Sbjct:    1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSN--RLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVA--HSPTA----LISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSK-MPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMC---LLAVSPDGNWLAASGTSAGVHVYNVKQ--LKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLH--DAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKF 684

The following BLAST results are available for this feature:

BLAST of TCONS_00067254-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067254-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
UTP4	9.373e-74	26.25	U3 small nucleolar RNA-associated protein 4 homolo...	[more]

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TCONS_00067254-protein (polypeptide) - C. hemisphaerica

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