TCONS_00067248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067248
Unique NameTCONS_00067248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067248 ID=TCONS_00067248|Name=TCONS_00067248|organism=Clytia hemisphaerica|type=transcript|length=470bp
AAGCACAAAAGGAAATCACCAAGGAGCTTGAAAATTTGGCTCCAATAACA
ACACAACCTGCAAGCACACTAAACGTATCTGCACCAGGATTTCAACCCAA
TCCAACATTGCCACTAACAACTATGGTTAATCCATTCGTGACTACCATAG
CTCCTACTTGCACAACATTTTCCAATGCATTCGACAAATCGACGTATGTT
CAACCACAACGTAGAAGAGTGGATCCATCACCATTCCAGATTATCAGTAC
CCCAAAAAAACATGCAGCAAAGGATACAGTACCAAAGAATCAAACAACTA
CAGATCACTCATCTATACCAATCAACTCTAACAAGGTCGATGCATGGATA
GATGAGCTCGACATCAACAAACCACCGTATCAACTAGCTGGTAATAAAAT
GGAAGATACGCTCGCCACATGGTTTGTACAGCAAGGTCTACCAAGGATCA
GAATACCATGGTTTGATGGC
Run BLAST on NCBI

protein sequence of TCONS_00067248-protein

>TCONS_00067248-protein ID=TCONS_00067248-protein|Name=TCONS_00067248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
AQKEITKELENLAPITTQPASTLNVSAPGFQPNPTLPLTTMVNPFVTTIA
PTCTTFSNAFDKSTYVQPQRRRVDPSPFQIISTPKKHAAKDTVPKNQTTT
DHSSIPINSNKVDAWIDELDINKPPYQLAGNKMEDTLATWFVQQGLPRIR
IPWFDG
Run BLAST on NCBI

transcript from alignment at scaffold_466:42861..43330

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067248 ID=TCONS_00067248|Name=TCONS_00067248|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at scaffold_466:42861..43330 (Clytia hemisphaerica)
GCCATCAAACCATGGTATTCTGATCCTTGGTAGACCTTGCTGTACAAACC
ATGTGGCGAGCGTATCTTCCATTTTATTACCAGCTAGTTGATACGGTGGT
TTGTTGATGTCGAGCTCATCTATCCATGCATCGACCTTGTTAGAGTTGAT
TGGTATAGATGAGTGATCTGTAGTTGTTTGATTCTTTGGTACTGTATCCT
TTGCTGCATGTTTTTTTGGGGTACTGATAATCTGGAATGGTGATGGATCC
ACTCTTCTACGTTGTGGTTGAACATACGTCGATTTGTCGAATGCATTGGA
AAATGTTGTGCAAGTAGGAGCTATGGTAGTCACGAATGGATTAACCATAG
TTGTTAGTGGCAATGTTGGATTGGGTTGAAATCCTGGTGCAGATACGTTT
AGTGTGCTTGCAGGTTGTGTTGTTATTGGAGCCAAATTTTCAAGCTCCTT
GGTGATTTCCTTTTGTGCTT

Coding sequence (CDS) from alignment at scaffold_466:42861..43330

>TCONS_00067248 ID=TCONS_00067248|Name=TCONS_00067248|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_466:42861..43330 (Clytia hemisphaerica)
GCCATCAAACCATGGTATTCTGATCCTTGGTAGACCTTGCTGTACAAACC
ATGTGGCGAGCGTATCTTCCATTTTATTACCAGCTAGTTGATACGGTGGT
TTGTTGATGTCGAGCTCATCTATCCATGCATCGACCTTGTTAGAGTTGAT
TGGTATAGATGAGTGATCTGTAGTTGTTTGATTCTTTGGTACTGTATCCT
TTGCTGCATGTTTTTTTGGGGTACTGATAATCTGGAATGGTGATGGATCC
ACTCTTCTACGTTGTGGTTGAACATACGTCGATTTGTCGAATGCATTGGA
AAATGTTGTGCAAGTAGGAGCTATGGTAGTCACGAATGGATTAACCATAG
TTGTTAGTGGCAATGTTGGATTGGGTTGAAATCCTGGTGCAGATACGTTT
AGTGTGCTTGCAGGTTGTGTTGTTATTGGAGCCAAATTTTCAAGCTCCTT
GGTGATTTCCTTTTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042007XLOC_042007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067248-exon-scaffold_466-1491911889:42861..43330TCONS_00067248-exon-scaffold_466-1491911889:42861..43330Clytia hemisphaericaexon
TCONS_00067248-exon-scaffold_466-1510915933:42861..43330TCONS_00067248-exon-scaffold_466-1510915933:42861..43330Clytia hemisphaericaexon
TCONS_00067248-exon-scaffold_466-1575043694:42861..43330TCONS_00067248-exon-scaffold_466-1575043694:42861..43330Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067248-proteinTCONS_00067248-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:42861..43330 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54372	0.39766	0	0	0	0	0.699038	0.163608	0.687274	0.8513	0.275431	0.543172	0.904028	0.938842	0	0.0828319	0.204084	0.10459	0	0.453616	0.5257	0	0.779274	0.425084	1.7513	0.651249	1.11832	0.596752	0.603487	1.22972
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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