TCONS_00067247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067247
Unique NameTCONS_00067247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067247 ID=TCONS_00067247|Name=TCONS_00067247|organism=Clytia hemisphaerica|type=transcript|length=319bp
GCCCTATTAAACGCCTCTGGACTTTTACAAGATCTacagaatttttcaaa
tgatGCTGCAGGCAACCCCCTTTGTATCTATGGTGATCCTGCTTATCCTA
TTAGGGCCCACTTAATTTCACCTTTCCAAGGAGCTCGATTAAATAATAAC
CAGAAAGCTTTCAACACATCAATGAGCACTTGCAGGATTTCAGTTGAATG
GGTGTTTAATGACATTatcaattatttcaaatttatggATTTCAAGAAAA
ACCTCAAGATTGGCCTGAGTCCAATTGGAAAAATGTACATTGTTTGTGCT
TTGCTACACAATGCAAGAA
Run BLAST on NCBI

protein sequence of TCONS_00067247-protein

>TCONS_00067247-protein ID=TCONS_00067247-protein|Name=TCONS_00067247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
ALLNASGLLQDLQNFSNDAAGNPLCIYGDPAYPIRAHLISPFQGARLNNN
QKAFNTSMSTCRISVEWVFNDIINYFKFMDFKKNLKIGLSPIGKMYIVCA
LLHNAR
Run BLAST on NCBI

transcript from alignment at scaffold_466:31334..31652

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067247 ID=TCONS_00067247|Name=TCONS_00067247|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at scaffold_466:31334..31652 (Clytia hemisphaerica)
TTCTTGCATTGTGTAGCAAAGCACAAACAATGTACATTTTTCCAATTGGA
CTCAGGCCAATCTTGAGGTTTTTCTTGAAATccataaatttgaaataatt
gatAATGTCATTAAACACCCATTCAACTGAAATCCTGCAAGTGCTCATTG
ATGTGTTGAAAGCTTTCTGGTTATTATTTAATCGAGCTCCTTGGAAAGGT
GAAATTAAGTGGGCCCTAATAGGATAAGCAGGATCACCATAGATACAAAG
GGGGTTGCCTGCAGCatcatttgaaaaattctgtAGATCTTGTAAAAGTC
CAGAGGCGTTTAATAGGGC

Coding sequence (CDS) from alignment at scaffold_466:31334..31652

>TCONS_00067247 ID=TCONS_00067247|Name=TCONS_00067247|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_466:31334..31652 (Clytia hemisphaerica)
TCTTGCATTGTGTAGCAAAGCACAAACAATGTACATTTTTCCAATTGGAC
TCAGGCCAATCTTGAGGTTTTTCTTGAAATccataaatttgaaataattg
atAATGTCATTAAACACCCATTCAACTGAAATCCTGCAAGTGCTCATTGA
TGTGTTGAAAGCTTTCTGGTTATTATTTAATCGAGCTCCTTGGAAAGGTG
AAATTAAGTGGGCCCTAATAGGATAAGCAGGATCACCATAGATACAAAGG
GGGTTGCCTGCAGCatcatttgaaaaattctgtAGATCTTGTAAAAGTCC
AGAGGCGTTTAATAGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042006XLOC_042006Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067247-exon-scaffold_466-1491911889:31334..31652TCONS_00067247-exon-scaffold_466-1491911889:31334..31652Clytia hemisphaericaexon
TCONS_00067247-exon-scaffold_466-1510915933:31334..31652TCONS_00067247-exon-scaffold_466-1510915933:31334..31652Clytia hemisphaericaexon
TCONS_00067247-exon-scaffold_466-1575043694:31334..31652TCONS_00067247-exon-scaffold_466-1575043694:31334..31652Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067247-proteinTCONS_00067247-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:31334..31652 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.96744	0	0	0	0.869765	1.03095	0.414599	0.388143	3.80447	2.35622	1.30686	0.42954	1.07236	1.55911	0.183115	0.19651	0.484169	0.744387	0	0.717438	0.935376	0.456244	0	0	1.73116	2.78104	0.884368	1.41573	0	0.729343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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