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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067242 ID=TCONS_00067242|Name=TCONS_00067242|organism=Clytia hemisphaerica|type=transcript|length=1604bp
CCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGcgataaaaaaagaa
cagaaaaacaagaaattatttaaaaaaacagcTACAATGGCCAGCATCAA
TTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAATTAGTTCCGT
TCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAGACAAA
GAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCAATGGA
TTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTTTGTGCTGAAA
GTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCAACAAA
ATTGACTgtTCGGAGTTGGATGATTTACTCTTAGTTACAAATACGCTTAA
GCTAAAATCATTCAAATTACATTTAATCGAACATATGAAGACAGAATACG
TATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAagtttttcatgct
gctcaaaACAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAA
GGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAA
TTTCTACACACACTTCAAGATATTAAAGATGACACTAATATTTGGGCTCT
GGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCAACAAAATAG
AGTCCTTCATACGAAATTGTGCTACAAACAGAACAAAGACAATTCTCAAC
TATTTAGTGTTAGCTGAAGATATGCATTTTGGTATTGAAGTAGAAAggag
tttggtttctaaactcTTAAGAGGGTTCCAAAATATCAGTATGTGCTTGG
AATTTCTCCTACTCAGCCGTCGAATGCAAGTTTGGATTGCAAGAAGAAAA
TTAGCTGATTCTTTGAAGAAGTTTCTGATTGATCCGTACTTTGATACTCT
TCCCAGGTATGGCAAGCAAACAACCCGAGAGAAAAAAGAGGCTGGGATAA
AGAAATATAAAGCAGTTGATGCTGACGTTGTTTCCATATTTCATGATCTA
GATCAACCCAAAATGGAGCTTATAAATGCATAATGGCATACATAATCACA
ATTTTTTGTTTGTGCCAGATTCTATTATATTAACTAAAagttctgtttta
tttaccatgcattgggcttttccagaaaaaaaccgcacaccccctgttga
ggaggtctatCCCTTtatggctggaaatgctgtaaaccccctggaattcc
aggaaattttagatttaaacCCCTCTGAAATTCTTAaatttagtaggatt
taaaaagctaccacatggaattccagttatttttgacagatttttgtatc
tccctatggaattccaccacatatatcaaaccttacccccttggaacgaa
agtggacctcctcaacaggggttttttttctggaaaaacccatTCTTAAA
ATGATTCTgtccctttttttgaaaatactttttattAAATCATTGtgatc
attttttaaataaaaaacttatTGCCTCATTTCTTGccttttttggacat
tttttaaaattgatgtttttgttttttgtccATAACTTCTGAACTAATAa
agca Run BLAST on NCBI protein sequence of TCONS_00067242-protein >TCONS_00067242-protein ID=TCONS_00067242-protein|Name=TCONS_00067242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MRIYCKFFMLLKTMLSSTNFKEGQNRRIELPGKKFNEVVYFLQFLHTLQD
IKDDTNIWALAPLCQEYQVDWLSNKIESFIRNCATNRTKTILNYLVLAED
MHFGIEVERSLVSKLLRGFQNISMCLEFLLLSRRMQVWIARRKLADSLKK
FLIDPYFDTLPRYGKQTTREKKEAGIKKYKAVDADVVSIFHDLDQPKMEL
INA Run BLAST on NCBI transcript from alignment at scaffold_466:478054..481271- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067242 ID=TCONS_00067242|Name=TCONS_00067242|organism=Clytia hemisphaerica|type=transcript|length=3218bp|location=Sequence derived from alignment at scaffold_466:478054..481271- (Clytia hemisphaerica)
CCTGACTCAAAATCATTTGGTATTGTTTCATTTCAGCGATAAAAAAAGAA
CAGAAAAACAAGAAATTATTTAAAAAAACAGCTACAATGGCCAGCATCAA
TTGTGACAACATCGTTCCGAACGAAGAGCGAAATGGAAAATTAGTTCCGT
TCGATTTCCATGAAAATGAATGTGACGTCATTATTAAGACAAAAGACAAA
GAAGTTCAGTTGCCATCCAGTTTCTTAGAAATGGTATCTAGTCCAATGGA
TTTCAATAACAACGTAAATAATCTTTTCGACGTTGATGTTTGTGCTGAAA
GTGTAACCAAAGCGTTGTCATTTTATCACCCTAAGGATTGGACCAACAAA
ATTGACTGTAAGTTTCGACTCTTTTCGCATTTTGTAAGTATCAATCAAAA
GCCATACCGTATTGCTTTGAATAAACGCCCCGGGTGTGTTTAAAGGTGGC
GTTCATCGAAAATCTTTCCTTAAATTAGTAGCTACAAGATAGGCCGATTC
GCGAAATTCTATCCACTCGAAAAATTTTGATCTTCGATTCGCGAAAAAAA
GTCCACGTGAAAATTAAAGATCAGCGACTTTAAGGTAGTACCAAGAAGGC
TATTTTAGTTTAAAGCTATAGAAGGTGCCAAGAGATTCTCATATTTTTAT
TTCTCATACAAATATGTTTTAATACTTTGGATTTTTTGTATTTTTAGGTT
CGGAGTTGGATGATTTACTCTTAGTTACAAATACGCTTAAGCTAAAATCA
TTCAAATTACATTTAATCGAACATATGAAGACAGAATACGTATCAAAGTC
AAAGCAATTTGATGAGAATTTACTGCAAGTTTTTCATGCTGCTCAAAAGT
ATGAATTGACTACATTAATTGAAACAATTAGATTAAGGTCTCTGCGCATC
TTAGATTTGGCTAGAAGCCAACGTACATTATACCTCGCTGGAGAAAATAT
ATCGATGTGAAATTTTAGAGACCTCTGTATATGAACATGTCAATATCAAC
AATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAAATTAATTATTCA
CAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATTTCTTAACCCACC
AGATTCATGAGCACTTTATTGATTATGAGTCAATTTCCTACAAAAAGGGT
TTTCCAAATTGTGTCGTCTTGGACGTTGAGAACAAAGAAATTCATGTCAG
TTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAGCAATGTTGAGTT
CGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAACTTCCTGGCAAG
AAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACACACACTTCAAGA
TATTAAAGGTATTTTTGTGTACAATACTCTTGAAGTAACTTATCGTTTTT
TGAACATTTCCCGACCTTTTTTCGACCTTCACAAACAAATTACTTCTATA
GTGTCTTTTCTAATCATCAATGAATTTAGATTTTCAAAATTTCCTTCTTG
TTTTTTACTGTCCGAATTTTCCTACCCATTTGTAGATGACACTAATATTT
GGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCAAC
AAAATACAGTCCTTCATACGAAATTGTGCTAGAAANATACCTCGCTGGAG
AAAATATATCGATGTGAAATTTTAGAGACCTCTGTATATGAACATGTCAA
TATCAACAATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAAATTAA
TTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATTTCTTA
ACCCACCAGATTCATGAGCACTTTATTGATTATGAGTCAATTTCCTACAA
AAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGAACAAAGAAATTC
ATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAGCAATG
TTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAACTTCC
TGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACACACAC
TTCAAGATATTAAAGGTATTTTTGTGTACAATACTCTTGAAGTAACTTAT
CGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCACAAACAAATTAC
TTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGATTTTCAAAATTTC
CTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTTGTAGATGACACT
AATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCT
CTCCAACAAAATAGAGTCCTTCATACGAAATTGTGCTACAAACAGAACAA
AGACAATTCTCAACTATTTAGTGTTAGCTGAAGATATGCATTTTGGTATT
GAAGTAGAAAGGAGTTTGGTTTCTAAACTCTTAAGAGGGTTCCAAAATAT
CAGTATGTGCTTGGAATTTCTCCTACTCAGCCGTCGAATGCAAGTTTGGA
TTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTCTGATTGATCCG
TACTTTGATACTCTTCCCAGGTATGGCAAGCAAACAACCCGAGAGAAAAA
AGAGGCTGGGATAAAGAAATATAAAGCAGTTGATGCTGACGTTGTTTCCA
TATTTCATGATCTAGATCAACCCAAAATGGAGCTTATAAATGCATAATGG
CATACATAATCACAATTTTTTGTTTGTGCCAGATTCTATTATATTAACTA
AAAGTTCTGTTTTATTTACCATGCATTGGGCTTTTCCAGAAAAAAACCGC
ACACCCCCTGTTGAGGAGGTCTATCCCTTTATGGCTGGAAATGCTGTAAA
CCCCCTGGAATTCCAGGAAATTTTAGATTTAAACCCCTCTGAAATTCTTA
AATTTAGTAGGATTTAAAAAGCTACCACATGGAATTCCAGTTATTTTTGA
CAGATTTTTGTATCTCCCTATGGAATTCCACCACATATATCAAACCTTAC
CCCCTTGGAACGAAAGTGGACCTCCTCAACAGGGGTTTTTTTTCTGGAAA
AACCCATTCTTAAAATGATTCTGTCCCTTTTTTTGAAAATACTTTTTATT
AAATCATTGTGATCATTTTTTAAATAAAAAACTTATTGCCTCATTTCTTG
CCTTTTTTGGACATTTTTTAAAATTGATGTTTTTGTTTTTTGTCCATAAC
TTCTGAACTAATAAAGCA Coding sequence (CDS) from alignment at scaffold_466:478054..481271- >TCONS_00067242 ID=TCONS_00067242|Name=TCONS_00067242|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_466:478054..481271- (Clytia hemisphaerica)
ATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTG
GATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAATTGTGCTACAAA
CAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTGAAGATATGCATT
TTGGTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTCTTAAGAGGGTTC
CAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAGCCGTCGAATGCA
AGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTCTGA
TTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGCAAACAACCCGA
GAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTTGATGCTGACGT
TGTTTCCATATTTCATGATCTAGATCAACCCAAAATGGAGCTTATAAATG
CATAACAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAGGA
TTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAATTT
CTACACACACTTCAAGATATTAAAGATGAGAATTTACTGCAAGTTTTTCA
TGCTGCTCAAAAATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAA
GAATATCAAGTGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAA
TTGTGCTACAAACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTG
AAGATATGCATTTTGGTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTC
TTAAGAGGGTTCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAG
CCGTCGAATGCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGA
AGAAGTTTCTGATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAG
CAAACAACCCGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGT
TGATGCTGACGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGG
AGCTTATAAATGCATAACAATGTTGAGTTCGACAAATTTCAAAGAAGGTC
AAAACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTAC
TTCCTTCAATTTCTACACACACTTCAAGATATTAAAGATGAGAATTTACT
GCAAGTTTTTCATGCTGCTCAAAAATGACACTAATATTTGGGCTCTGGCA
CCTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCAACAAAATAGAGTC
CTTCATACGAAATTGTGCTACAAACAGAACAAAGACAATTCTCAACTATT
TAGTGTTAGCTGAAGATATGCATTTTGGTATTGAAGTAGAAAGGAGTTTG
GTTTCTAAACTCTTAAGAGGGTTCCAAAATATCAGTATGTGCTTGGAATT
TCTCCTACTCAGCCGTCGAATGCAAGTTTGGATTGCAAGAAGAAAATTAG
CTGATTCTTTGAAGAAGTTTCTGATTGATCCGTACTTTGATACTCTTCCC
AGGTATGGCAAGCAAACAACCCGAGAGAAAAAAGAGGCTGGGATAAAGAA
ATATAAAGCAGTTGATGCTGACGTTGTTTCCATATTTCATGATCTAGATC
AACCCAAAATGGAGCTTATAAATGCATAACAATGTTGAGTTCGACAAATT
TCAAAGAAGGTCAAAACAGAAGGATTGAACTTCCTGGCAAGAAATTCAAT
GAAGTTGTCTACTTCCTTCAATTTCTACACACACTTCAAGATATTAAAGA
TGAGAATTTACTGCAAGTTTTTCATGCTGCTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067242-exon-scaffold_466-1575043694:480915..481271 | TCONS_00067242-exon-scaffold_466-1575043694:480915..481271 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1575043694:480424..480574 | TCONS_00067242-exon-scaffold_466-1575043694:480424..480574 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1575043694:479914..480033 | TCONS_00067242-exon-scaffold_466-1575043694:479914..480033 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1575043694:478054..479029 | TCONS_00067242-exon-scaffold_466-1575043694:478054..479029 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1510915933:480915..481271 | TCONS_00067242-exon-scaffold_466-1510915933:480915..481271 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1510915933:480424..480574 | TCONS_00067242-exon-scaffold_466-1510915933:480424..480574 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1510915933:479914..480033 | TCONS_00067242-exon-scaffold_466-1510915933:479914..480033 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1510915933:478054..479029 | TCONS_00067242-exon-scaffold_466-1510915933:478054..479029 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1491911889:480915..481271 | TCONS_00067242-exon-scaffold_466-1491911889:480915..481271 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1491911889:480424..480574 | TCONS_00067242-exon-scaffold_466-1491911889:480424..480574 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1491911889:479914..480033 | TCONS_00067242-exon-scaffold_466-1491911889:479914..480033 | Clytia hemisphaerica | exon |
| TCONS_00067242-exon-scaffold_466-1491911889:478054..479029 | TCONS_00067242-exon-scaffold_466-1491911889:478054..479029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:478054..481271 - |
Blast
The following BLAST results are available for this feature:
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