TCONS_00067241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067241
Unique NameTCONS_00067241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067241 ID=TCONS_00067241|Name=TCONS_00067241|organism=Clytia hemisphaerica|type=transcript|length=1984bp
TTTCAGcgataaaaaaagaacagaaaaacaagaaattatttaaaaaaaca
gcTACAATGGCCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCG
AAATGGAAAATTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCA
TTATTAAGACAAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAA
ATGGTATCTAGTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGA
CGTTGATGTTTGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACC
CTAAGGATTGGACCAACAAAATTGACTgtTCGGAGTTGGATGATTTACTC
TTAGTTACAAATACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGA
ACATATGAAGACAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATT
TACTGCAagtttttcatgctgctcaaaAATGACACTAATATTTGGGCTCT
GGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCAACAAAATAC
AGTCCTTCATACGAAATTGTGCTAGAAANATACCTCGCTGGAGAAAATAT
ATCGATGTGAAATTTTAGAGACCTCTGTATATGAACATGTCAATATCAAC
AATGATCCGGAGTTGCTTGCAATATTTCACCTCTTCAAATTAATTATTCA
CAAATTTCAAAACCCCGACTTGGCTTCTAAAACAGATTTCTTAACCCACC
AGATTCATGAGCACTTTATTGATTATGAGTCAATTTCCTACAAAAAGGGT
TTTCCAAATTGTGTCGTCTTGGACGTTgagaacaaagaaattcatgTCAG
TTCGTATTTACTCATAAACAACTCTCCTGTATTCAAAGCAATGTTGAGTT
CGACAAATTTCAAAGAAGGTCAAAACAGAAGGATTGAACTTCCTGGCAAG
AAATTCAATGAAGTTGTCTACTTCCTTCAATTTCTACACACACTTCAAGA
TATTAAAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAAT
ATCAAGTGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAATTGT
GCTACAAACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTGAAGA
TATGCATTTTGGTATTGAAGTAGAAAggagtttggtttctaaactcTTAA
GAGGGTTCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAGCCGT
CGAATGCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAAGAA
GTTTCTGATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGCAAA
CAACCCGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTTGAT
GCTGACGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGGAGCT
TATAAATGCATAATGGCATACATAATCACAATTTTTTGTTTGTGCCAGAT
TCTATTATATTAACTAAAagttctgttttatttaccatgcattgggcttt
tccagaaaaaaaccgcacaccccctgttgaggaggtctatCCCTTtatgg
ctggaaatgctgtaaaccccctggaattccaggaaattttagatttaaac
CCCTCTGAAATTCTTAaatttagtaggatttaaaaagctaccacatggaa
ttccagttatttttgacagatttttgtatctccctatggaattccaccac
atatatcaaaccttacccccttggaacgaaagtggacctcctcaacaggg
gttttttttctggaaaaacccatTCTTAAAATGATTCTgtcccttttttt
gaaaatactttttattAAATCATTGtgatcattttttaaataaaaaactt
atTGCCTCATTTCTTGccttttttggacattttttaaaattgatgttttt
gttttttgtccATAACTTCTGAACTAATAaagca
Run BLAST on NCBI

transcript from alignment at scaffold_466:478054..481241-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067241 ID=TCONS_00067241|Name=TCONS_00067241|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at scaffold_466:478054..481241- (Clytia hemisphaerica)
TTTCAGCGATAAAAAAAGAACAGAAAAACAAGAAATTATTTAAAAAAACA
GCTACAATGGCCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCG
AAATGGAAAATTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCA
TTATTAAGACAAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAA
ATGGTATCTAGTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGA
CGTTGATGTTTGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACC
CTAAGGATTGGACCAACAAAATTGACTGTAAGTTTCGACTCTTTTCGCAT
TTTGTAAGTATCAATCAAAAGCCATACCGTATTGCTTTGAATAAACGCCC
CGGGTGTGTTTAAAGGTGGCGTTCATCGAAAATCTTTCCTTAAATTAGTA
GCTACAAGATAGGCCGATTCGCGAAATTCTATCCACTCGAAAAATTTTGA
TCTTCGATTCGCGAAAAAAAGTCCACGTGAAAATTAAAGATCAGCGACTT
TAAGGTAGTACCAAGAAGGCTATTTTAGTTTAAAGCTATAGAAGGTGCCA
AGAGATTCTCATATTTTTATTTCTCATACAAATATGTTTTAATACTTTGG
ATTTTTTGTATTTTTAGGTTCGGAGTTGGATGATTTACTCTTAGTTACAA
ATACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGAACATATGAAG
ACAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAAGT
TTTTCATGCTGCTCAAAAGTATGAATTGACTACATTAATTGAAACAATTA
GATTAAGGTCTCTGCGCATCTTAGATTTGGCTAGAAGCCAACGTACATTA
TACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTAT
ATGAACATGTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCAC
CTCTTCAAATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAA
AACAGATTTCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGT
CAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAG
AACAAAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGT
ATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAA
GGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAA
TTTCTACACACACTTCAAGATATTAAAGGTATTTTTGTGTACAATACTCT
TGAAGTAACTTATCGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTC
ACAAACAAATTACTTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGA
TTTTCAAAATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATT
TGTAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATC
AAGTGGATTGGCTCTCCAACAAAATACAGTCCTTCATACGAAATTGTGCT
AGAAANATACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACC
TCTGTATATGAACATGTCAATATCAACAATGATCCGGAGTTGCTTGCAAT
ATTTCACCTCTTCAAATTAATTATTCACAAATTTCAAAACCCCGACTTGG
CTTCTAAAACAGATTTCTTAACCCACCAGATTCATGAGCACTTTATTGAT
TATGAGTCAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGA
CGTTGAGAACAAAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACT
CTCCTGTATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAA
AACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTT
CCTTCAATTTCTACACACACTTCAAGATATTAAAGGTATTTTTGTGTACA
ATACTCTTGAAGTAACTTATCGTTTTTTGAACATTTCCCGACCTTTTTTC
GACCTTCACAAACAAATTACTTCTATAGTGTCTTTTCTAATCATCAATGA
ATTTAGATTTTCAAAATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCT
ACCCATTTGTAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAA
GAATATCAAGTGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAA
TTGTGCTACAAACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTG
AAGATATGCATTTTGGTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTC
TTAAGAGGGTTCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAG
CCGTCGAATGCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGA
AGAAGTTTCTGATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAG
CAAACAACCCGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGT
TGATGCTGACGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGG
AGCTTATAAATGCATAATGGCATACATAATCACAATTTTTTGTTTGTGCC
AGATTCTATTATATTAACTAAAAGTTCTGTTTTATTTACCATGCATTGGG
CTTTTCCAGAAAAAAACCGCACACCCCCTGTTGAGGAGGTCTATCCCTTT
ATGGCTGGAAATGCTGTAAACCCCCTGGAATTCCAGGAAATTTTAGATTT
AAACCCCTCTGAAATTCTTAAATTTAGTAGGATTTAAAAAGCTACCACAT
GGAATTCCAGTTATTTTTGACAGATTTTTGTATCTCCCTATGGAATTCCA
CCACATATATCAAACCTTACCCCCTTGGAACGAAAGTGGACCTCCTCAAC
AGGGGTTTTTTTTCTGGAAAAACCCATTCTTAAAATGATTCTGTCCCTTT
TTTTGAAAATACTTTTTATTAAATCATTGTGATCATTTTTTAAATAAAAA
ACTTATTGCCTCATTTCTTGCCTTTTTTGGACATTTTTTAAAATTGATGT
TTTTGTTTTTTGTCCATAACTTCTGAACTAATAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042004XLOC_042004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067241-exon-scaffold_466-1575043694:480915..481241TCONS_00067241-exon-scaffold_466-1575043694:480915..481241Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1575043694:480424..480574TCONS_00067241-exon-scaffold_466-1575043694:480424..480574Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1575043694:479207..479736TCONS_00067241-exon-scaffold_466-1575043694:479207..479736Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1575043694:478054..479029TCONS_00067241-exon-scaffold_466-1575043694:478054..479029Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1510915933:480915..481241TCONS_00067241-exon-scaffold_466-1510915933:480915..481241Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1510915933:480424..480574TCONS_00067241-exon-scaffold_466-1510915933:480424..480574Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1510915933:479207..479736TCONS_00067241-exon-scaffold_466-1510915933:479207..479736Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1510915933:478054..479029TCONS_00067241-exon-scaffold_466-1510915933:478054..479029Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1491911889:480915..481241TCONS_00067241-exon-scaffold_466-1491911889:480915..481241Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1491911889:480424..480574TCONS_00067241-exon-scaffold_466-1491911889:480424..480574Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1491911889:479207..479736TCONS_00067241-exon-scaffold_466-1491911889:479207..479736Clytia hemisphaericaexon
TCONS_00067241-exon-scaffold_466-1491911889:478054..479029TCONS_00067241-exon-scaffold_466-1491911889:478054..479029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:478054..481241 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28857	1.20585	1.2408	1.81268	1.77231	4.28365	3.10702	3.33404	0.648119	1.3307	1.60047	1.06829	0.911714	0.658871	1.44693	1.59738	2.05104	0.999587	0.878035	0.717121	2.10415	0.347096	1.36852	0.664741	1.88769	3.80778	1.63193	1.30243	1.93209	3.60143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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